Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04005

Experiment: hib MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_04003 and OHPLBJKB_04004 are separated by 12 nucleotidesOHPLBJKB_04004 and OHPLBJKB_04005 are separated by 222 nucleotidesOHPLBJKB_04005 and OHPLBJKB_04006 are separated by 57 nucleotidesOHPLBJKB_04006 and OHPLBJKB_04007 are separated by 101 nucleotidesOHPLBJKB_04007 and OHPLBJKB_04008 overlap by 26 nucleotides OHPLBJKB_04003: OHPLBJKB_04003 - 4-hydroxybenzoate octaprenyltransferase, at 4,200,368 to 4,201,240 _04003 OHPLBJKB_04004: OHPLBJKB_04004 - Chorismate pyruvate-lyase, at 4,201,253 to 4,201,750 _04004 OHPLBJKB_04005: OHPLBJKB_04005 - hypothetical protein, at 4,201,973 to 4,203,301 _04005 OHPLBJKB_04006: OHPLBJKB_04006 - hypothetical protein, at 4,203,359 to 4,203,553 _04006 OHPLBJKB_04007: OHPLBJKB_04007 - hypothetical protein, at 4,203,655 to 4,203,807 _04007 OHPLBJKB_04008: OHPLBJKB_04008 - hypothetical protein, at 4,203,782 to 4,204,702 _04008 Position (kb) 4201 4202 4203 4204Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4201.363 kb on + strand, within OHPLBJKB_04004at 4201.399 kb on - strand, within OHPLBJKB_04004at 4201.509 kb on - strand, within OHPLBJKB_04004at 4201.765 kb on + strandat 4201.770 kb on - strandat 4201.774 kb on + strandat 4201.813 kb on + strandat 4201.924 kb on + strandat 4201.971 kb on - strandat 4201.974 kb on + strandat 4201.974 kb on + strandat 4201.974 kb on + strandat 4201.975 kb on - strandat 4201.975 kb on - strandat 4201.975 kb on - strandat 4201.978 kb on + strandat 4201.979 kb on - strandat 4201.982 kb on + strandat 4201.982 kb on + strandat 4201.983 kb on - strandat 4201.983 kb on - strandat 4201.983 kb on - strandat 4201.985 kb on - strandat 4201.985 kb on - strandat 4201.993 kb on + strandat 4201.994 kb on - strandat 4201.999 kb on + strandat 4202.038 kb on - strandat 4202.041 kb on + strandat 4202.083 kb on + strandat 4202.098 kb on + strandat 4202.099 kb on - strandat 4202.099 kb on - strandat 4202.110 kb on + strand, within OHPLBJKB_04005at 4202.112 kb on + strand, within OHPLBJKB_04005at 4202.112 kb on + strand, within OHPLBJKB_04005at 4202.113 kb on - strand, within OHPLBJKB_04005at 4202.113 kb on - strand, within OHPLBJKB_04005at 4202.117 kb on - strand, within OHPLBJKB_04005at 4202.158 kb on + strand, within OHPLBJKB_04005at 4202.180 kb on + strand, within OHPLBJKB_04005at 4202.181 kb on - strand, within OHPLBJKB_04005at 4202.189 kb on - strand, within OHPLBJKB_04005at 4202.438 kb on - strand, within OHPLBJKB_04005at 4202.678 kb on + strand, within OHPLBJKB_04005at 4202.842 kb on + strand, within OHPLBJKB_04005at 4202.842 kb on + strand, within OHPLBJKB_04005at 4202.842 kb on + strand, within OHPLBJKB_04005at 4202.842 kb on + strand, within OHPLBJKB_04005at 4202.874 kb on - strand, within OHPLBJKB_04005at 4203.008 kb on - strand, within OHPLBJKB_04005at 4203.086 kb on - strand, within OHPLBJKB_04005at 4203.153 kb on - strand, within OHPLBJKB_04005at 4203.246 kb on + strandat 4203.263 kb on - strandat 4203.327 kb on - strandat 4203.457 kb on + strand, within OHPLBJKB_04006at 4203.548 kb on + strandat 4203.549 kb on - strandat 4203.779 kb on + strand, within OHPLBJKB_04007at 4203.797 kb on + strandat 4203.808 kb on + strandat 4203.913 kb on + strand, within OHPLBJKB_04008at 4204.001 kb on - strand, within OHPLBJKB_04008at 4204.038 kb on - strand, within OHPLBJKB_04008at 4204.046 kb on + strand, within OHPLBJKB_04008at 4204.047 kb on - strand, within OHPLBJKB_04008at 4204.106 kb on - strand, within OHPLBJKB_04008at 4204.162 kb on - strand, within OHPLBJKB_04008

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Per-strain Table

Position Strand Gene LocusTag Fraction hib MOI1
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4,201,363 + OHPLBJKB_04004 0.22 +0.2
4,201,399 - OHPLBJKB_04004 0.29 -1.9
4,201,509 - OHPLBJKB_04004 0.51 -2.3
4,201,765 + -0.0
4,201,770 - +0.8
4,201,774 + -0.6
4,201,813 + -1.6
4,201,924 + +1.1
4,201,971 - +0.8
4,201,974 + +0.8
4,201,974 + -0.2
4,201,974 + -0.8
4,201,975 - +1.2
4,201,975 - +0.5
4,201,975 - -1.0
4,201,978 + +0.2
4,201,979 - +0.0
4,201,982 + -0.9
4,201,982 + +0.4
4,201,983 - -2.9
4,201,983 - +0.7
4,201,983 - +0.5
4,201,985 - -0.3
4,201,985 - -1.7
4,201,993 + -0.2
4,201,994 - +0.6
4,201,999 + +0.2
4,202,038 - -0.7
4,202,041 + -0.9
4,202,083 + +0.3
4,202,098 + +1.5
4,202,099 - -2.5
4,202,099 - -0.8
4,202,110 + OHPLBJKB_04005 0.10 -1.6
4,202,112 + OHPLBJKB_04005 0.10 +0.6
4,202,112 + OHPLBJKB_04005 0.10 +2.0
4,202,113 - OHPLBJKB_04005 0.11 -0.2
4,202,113 - OHPLBJKB_04005 0.11 -2.1
4,202,117 - OHPLBJKB_04005 0.11 +1.5
4,202,158 + OHPLBJKB_04005 0.14 +1.2
4,202,180 + OHPLBJKB_04005 0.16 -2.0
4,202,181 - OHPLBJKB_04005 0.16 -0.4
4,202,189 - OHPLBJKB_04005 0.16 +0.4
4,202,438 - OHPLBJKB_04005 0.35 -0.5
4,202,678 + OHPLBJKB_04005 0.53 -0.9
4,202,842 + OHPLBJKB_04005 0.65 -2.0
4,202,842 + OHPLBJKB_04005 0.65 -0.5
4,202,842 + OHPLBJKB_04005 0.65 -0.1
4,202,842 + OHPLBJKB_04005 0.65 +0.9
4,202,874 - OHPLBJKB_04005 0.68 -0.6
4,203,008 - OHPLBJKB_04005 0.78 -0.8
4,203,086 - OHPLBJKB_04005 0.84 +1.7
4,203,153 - OHPLBJKB_04005 0.89 +1.8
4,203,246 + -0.9
4,203,263 - +0.5
4,203,327 - -0.0
4,203,457 + OHPLBJKB_04006 0.50 -0.5
4,203,548 + +1.0
4,203,549 - +0.1
4,203,779 + OHPLBJKB_04007 0.81 +0.0
4,203,797 + -0.1
4,203,808 + -1.0
4,203,913 + OHPLBJKB_04008 0.14 +0.8
4,204,001 - OHPLBJKB_04008 0.24 -1.3
4,204,038 - OHPLBJKB_04008 0.28 -0.7
4,204,046 + OHPLBJKB_04008 0.29 -1.0
4,204,047 - OHPLBJKB_04008 0.29 +0.4
4,204,106 - OHPLBJKB_04008 0.35 -0.3
4,204,162 - OHPLBJKB_04008 0.41 +0.9

Or see this region's nucleotide sequence