Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00965

Experiment: hib MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00964 and OHPLBJKB_00965 are separated by 147 nucleotidesOHPLBJKB_00965 and OHPLBJKB_00966 are separated by 16 nucleotidesOHPLBJKB_00966 and OHPLBJKB_00967 overlap by 10 nucleotides OHPLBJKB_00964: OHPLBJKB_00964 - Protein FixB, at 997,890 to 998,750 _00964 OHPLBJKB_00965: OHPLBJKB_00965 - putative protein YgcP, at 998,898 to 999,473 _00965 OHPLBJKB_00966: OHPLBJKB_00966 - Ferredoxin-like protein FixX, at 999,490 to 999,750 _00966 OHPLBJKB_00967: OHPLBJKB_00967 - Electron transfer flavoprotein-ubiquinone oxidoreductase, at 999,741 to 1,001,012 _00967 Position (kb) 998 999 1000Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 997.913 kb on - strandat 997.970 kb on + strandat 997.971 kb on - strandat 997.990 kb on + strand, within OHPLBJKB_00964at 998.006 kb on - strand, within OHPLBJKB_00964at 998.036 kb on - strand, within OHPLBJKB_00964at 998.125 kb on + strand, within OHPLBJKB_00964at 998.125 kb on + strand, within OHPLBJKB_00964at 998.125 kb on + strand, within OHPLBJKB_00964at 998.126 kb on - strand, within OHPLBJKB_00964at 998.126 kb on - strand, within OHPLBJKB_00964at 998.126 kb on - strand, within OHPLBJKB_00964at 998.162 kb on + strand, within OHPLBJKB_00964at 998.174 kb on - strand, within OHPLBJKB_00964at 998.174 kb on - strand, within OHPLBJKB_00964at 998.240 kb on - strand, within OHPLBJKB_00964at 998.240 kb on - strand, within OHPLBJKB_00964at 998.384 kb on - strand, within OHPLBJKB_00964at 998.447 kb on + strand, within OHPLBJKB_00964at 998.447 kb on + strand, within OHPLBJKB_00964at 998.481 kb on + strand, within OHPLBJKB_00964at 998.481 kb on + strand, within OHPLBJKB_00964at 998.482 kb on - strand, within OHPLBJKB_00964at 998.534 kb on + strand, within OHPLBJKB_00964at 998.535 kb on - strand, within OHPLBJKB_00964at 998.535 kb on - strand, within OHPLBJKB_00964at 998.567 kb on + strand, within OHPLBJKB_00964at 998.567 kb on + strand, within OHPLBJKB_00964at 998.567 kb on + strand, within OHPLBJKB_00964at 998.567 kb on + strand, within OHPLBJKB_00964at 998.567 kb on + strand, within OHPLBJKB_00964at 998.567 kb on + strand, within OHPLBJKB_00964at 998.567 kb on + strand, within OHPLBJKB_00964at 998.567 kb on + strand, within OHPLBJKB_00964at 998.568 kb on - strand, within OHPLBJKB_00964at 998.568 kb on - strand, within OHPLBJKB_00964at 998.568 kb on - strand, within OHPLBJKB_00964at 998.568 kb on - strand, within OHPLBJKB_00964at 998.568 kb on - strand, within OHPLBJKB_00964at 998.568 kb on - strand, within OHPLBJKB_00964at 998.611 kb on + strand, within OHPLBJKB_00964at 998.611 kb on + strand, within OHPLBJKB_00964at 998.612 kb on - strand, within OHPLBJKB_00964at 998.618 kb on + strand, within OHPLBJKB_00964at 998.639 kb on + strand, within OHPLBJKB_00964at 998.749 kb on - strandat 998.797 kb on - strandat 998.797 kb on - strandat 998.797 kb on - strandat 998.797 kb on - strandat 998.797 kb on - strandat 998.806 kb on - strandat 998.859 kb on + strandat 998.904 kb on + strandat 999.062 kb on + strand, within OHPLBJKB_00965at 999.063 kb on - strand, within OHPLBJKB_00965at 999.083 kb on + strand, within OHPLBJKB_00965at 999.084 kb on - strand, within OHPLBJKB_00965at 999.084 kb on - strand, within OHPLBJKB_00965at 999.114 kb on - strand, within OHPLBJKB_00965at 999.215 kb on + strand, within OHPLBJKB_00965at 999.216 kb on - strand, within OHPLBJKB_00965at 999.266 kb on + strand, within OHPLBJKB_00965at 999.267 kb on - strand, within OHPLBJKB_00965at 999.267 kb on - strand, within OHPLBJKB_00965at 999.299 kb on + strand, within OHPLBJKB_00965at 999.299 kb on + strand, within OHPLBJKB_00965at 999.299 kb on + strand, within OHPLBJKB_00965at 999.299 kb on + strand, within OHPLBJKB_00965at 999.300 kb on - strand, within OHPLBJKB_00965at 999.300 kb on - strand, within OHPLBJKB_00965at 999.300 kb on - strand, within OHPLBJKB_00965at 999.300 kb on - strand, within OHPLBJKB_00965at 999.307 kb on + strand, within OHPLBJKB_00965at 999.324 kb on - strand, within OHPLBJKB_00965at 999.341 kb on + strand, within OHPLBJKB_00965at 999.342 kb on - strand, within OHPLBJKB_00965at 999.357 kb on - strand, within OHPLBJKB_00965at 999.365 kb on - strand, within OHPLBJKB_00965at 999.377 kb on + strand, within OHPLBJKB_00965at 999.377 kb on + strand, within OHPLBJKB_00965at 999.377 kb on + strand, within OHPLBJKB_00965at 999.419 kb on + strandat 999.420 kb on - strandat 999.420 kb on - strandat 999.462 kb on + strandat 999.462 kb on + strandat 999.462 kb on + strandat 999.462 kb on + strandat 999.463 kb on - strandat 999.463 kb on - strandat 999.463 kb on - strandat 999.463 kb on - strandat 999.473 kb on + strandat 999.474 kb on - strandat 999.474 kb on - strandat 999.478 kb on + strandat 999.484 kb on + strandat 999.487 kb on + strandat 999.487 kb on + strandat 999.487 kb on + strandat 999.487 kb on + strandat 999.488 kb on - strandat 999.488 kb on - strandat 999.488 kb on - strandat 999.488 kb on - strandat 999.488 kb on - strandat 999.488 kb on - strandat 999.488 kb on - strandat 999.488 kb on - strandat 999.488 kb on - strandat 999.544 kb on + strand, within OHPLBJKB_00966at 999.545 kb on - strand, within OHPLBJKB_00966at 999.545 kb on - strand, within OHPLBJKB_00966at 999.545 kb on - strand, within OHPLBJKB_00966at 999.545 kb on - strand, within OHPLBJKB_00966at 999.545 kb on - strand, within OHPLBJKB_00966at 999.545 kb on - strand, within OHPLBJKB_00966at 999.545 kb on - strand, within OHPLBJKB_00966at 999.545 kb on - strand, within OHPLBJKB_00966at 999.670 kb on + strand, within OHPLBJKB_00966at 999.671 kb on - strand, within OHPLBJKB_00966at 999.743 kb on - strandat 999.743 kb on - strandat 999.801 kb on + strandat 999.802 kb on - strandat 999.802 kb on - strandat 999.873 kb on - strand, within OHPLBJKB_00967at 1000.153 kb on + strand, within OHPLBJKB_00967at 1000.204 kb on + strand, within OHPLBJKB_00967at 1000.204 kb on + strand, within OHPLBJKB_00967at 1000.205 kb on - strand, within OHPLBJKB_00967at 1000.205 kb on - strand, within OHPLBJKB_00967at 1000.205 kb on - strand, within OHPLBJKB_00967at 1000.205 kb on - strand, within OHPLBJKB_00967at 1000.205 kb on - strand, within OHPLBJKB_00967at 1000.346 kb on + strand, within OHPLBJKB_00967at 1000.346 kb on + strand, within OHPLBJKB_00967at 1000.346 kb on + strand, within OHPLBJKB_00967at 1000.346 kb on + strand, within OHPLBJKB_00967at 1000.347 kb on - strand, within OHPLBJKB_00967at 1000.347 kb on - strand, within OHPLBJKB_00967at 1000.347 kb on - strand, within OHPLBJKB_00967at 1000.347 kb on - strand, within OHPLBJKB_00967at 1000.347 kb on - strand, within OHPLBJKB_00967at 1000.349 kb on + strand, within OHPLBJKB_00967at 1000.349 kb on + strand, within OHPLBJKB_00967at 1000.350 kb on - strand, within OHPLBJKB_00967at 1000.351 kb on + strand, within OHPLBJKB_00967at 1000.352 kb on - strand, within OHPLBJKB_00967at 1000.352 kb on - strand, within OHPLBJKB_00967at 1000.352 kb on - strand, within OHPLBJKB_00967at 1000.445 kb on + strand, within OHPLBJKB_00967

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Per-strain Table

Position Strand Gene LocusTag Fraction hib MOI1
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997,913 - +1.1
997,970 + -1.2
997,971 - -1.0
997,990 + OHPLBJKB_00964 0.12 -0.7
998,006 - OHPLBJKB_00964 0.13 -0.2
998,036 - OHPLBJKB_00964 0.17 -0.8
998,125 + OHPLBJKB_00964 0.27 +0.8
998,125 + OHPLBJKB_00964 0.27 -0.7
998,125 + OHPLBJKB_00964 0.27 -0.6
998,126 - OHPLBJKB_00964 0.27 +0.5
998,126 - OHPLBJKB_00964 0.27 -0.9
998,126 - OHPLBJKB_00964 0.27 -1.7
998,162 + OHPLBJKB_00964 0.32 +0.9
998,174 - OHPLBJKB_00964 0.33 -1.2
998,174 - OHPLBJKB_00964 0.33 -2.5
998,240 - OHPLBJKB_00964 0.41 -2.9
998,240 - OHPLBJKB_00964 0.41 +1.3
998,384 - OHPLBJKB_00964 0.57 -3.8
998,447 + OHPLBJKB_00964 0.65 -1.0
998,447 + OHPLBJKB_00964 0.65 +0.3
998,481 + OHPLBJKB_00964 0.69 -0.2
998,481 + OHPLBJKB_00964 0.69 -1.3
998,482 - OHPLBJKB_00964 0.69 -0.2
998,534 + OHPLBJKB_00964 0.75 +1.0
998,535 - OHPLBJKB_00964 0.75 -1.0
998,535 - OHPLBJKB_00964 0.75 -0.9
998,567 + OHPLBJKB_00964 0.79 +0.6
998,567 + OHPLBJKB_00964 0.79 +0.1
998,567 + OHPLBJKB_00964 0.79 -0.2
998,567 + OHPLBJKB_00964 0.79 +0.4
998,567 + OHPLBJKB_00964 0.79 +0.0
998,567 + OHPLBJKB_00964 0.79 -0.2
998,567 + OHPLBJKB_00964 0.79 +0.1
998,567 + OHPLBJKB_00964 0.79 -1.0
998,568 - OHPLBJKB_00964 0.79 -0.3
998,568 - OHPLBJKB_00964 0.79 -2.1
998,568 - OHPLBJKB_00964 0.79 +1.5
998,568 - OHPLBJKB_00964 0.79 -2.2
998,568 - OHPLBJKB_00964 0.79 +3.3
998,568 - OHPLBJKB_00964 0.79 -0.5
998,611 + OHPLBJKB_00964 0.84 -2.9
998,611 + OHPLBJKB_00964 0.84 +0.8
998,612 - OHPLBJKB_00964 0.84 -2.6
998,618 + OHPLBJKB_00964 0.85 -0.6
998,639 + OHPLBJKB_00964 0.87 -3.4
998,749 - -0.1
998,797 - -0.5
998,797 - -2.9
998,797 - -0.3
998,797 - +0.8
998,797 - +0.1
998,806 - +0.2
998,859 + -0.6
998,904 + -2.1
999,062 + OHPLBJKB_00965 0.28 -0.2
999,063 - OHPLBJKB_00965 0.29 -1.3
999,083 + OHPLBJKB_00965 0.32 -0.3
999,084 - OHPLBJKB_00965 0.32 +0.6
999,084 - OHPLBJKB_00965 0.32 +0.3
999,114 - OHPLBJKB_00965 0.38 -1.0
999,215 + OHPLBJKB_00965 0.55 +1.5
999,216 - OHPLBJKB_00965 0.55 +0.3
999,266 + OHPLBJKB_00965 0.64 +1.2
999,267 - OHPLBJKB_00965 0.64 +2.3
999,267 - OHPLBJKB_00965 0.64 +2.3
999,299 + OHPLBJKB_00965 0.70 +1.1
999,299 + OHPLBJKB_00965 0.70 -1.2
999,299 + OHPLBJKB_00965 0.70 -1.7
999,299 + OHPLBJKB_00965 0.70 -0.7
999,300 - OHPLBJKB_00965 0.70 +0.9
999,300 - OHPLBJKB_00965 0.70 -0.5
999,300 - OHPLBJKB_00965 0.70 -0.7
999,300 - OHPLBJKB_00965 0.70 -2.4
999,307 + OHPLBJKB_00965 0.71 -0.1
999,324 - OHPLBJKB_00965 0.74 +0.2
999,341 + OHPLBJKB_00965 0.77 +0.7
999,342 - OHPLBJKB_00965 0.77 -0.6
999,357 - OHPLBJKB_00965 0.80 -2.1
999,365 - OHPLBJKB_00965 0.81 +1.5
999,377 + OHPLBJKB_00965 0.83 -0.9
999,377 + OHPLBJKB_00965 0.83 -0.8
999,377 + OHPLBJKB_00965 0.83 +0.2
999,419 + -0.0
999,420 - -0.4
999,420 - +1.8
999,462 + +0.6
999,462 + -1.1
999,462 + -2.8
999,462 + -0.2
999,463 - +0.3
999,463 - +1.6
999,463 - +1.7
999,463 - -1.3
999,473 + -0.6
999,474 - -0.2
999,474 - -1.6
999,478 + +0.5
999,484 + -0.2
999,487 + +1.0
999,487 + -0.8
999,487 + -1.0
999,487 + -1.4
999,488 - +0.3
999,488 - -1.3
999,488 - +0.9
999,488 - -0.3
999,488 - +0.7
999,488 - -1.0
999,488 - -2.7
999,488 - -0.6
999,488 - -1.3
999,544 + OHPLBJKB_00966 0.21 -1.8
999,545 - OHPLBJKB_00966 0.21 -0.4
999,545 - OHPLBJKB_00966 0.21 -0.0
999,545 - OHPLBJKB_00966 0.21 +0.7
999,545 - OHPLBJKB_00966 0.21 -0.5
999,545 - OHPLBJKB_00966 0.21 +2.8
999,545 - OHPLBJKB_00966 0.21 -1.6
999,545 - OHPLBJKB_00966 0.21 +0.6
999,545 - OHPLBJKB_00966 0.21 -0.5
999,670 + OHPLBJKB_00966 0.69 +1.7
999,671 - OHPLBJKB_00966 0.69 -0.6
999,743 - -0.5
999,743 - -0.8
999,801 + -2.0
999,802 - +0.9
999,802 - +0.3
999,873 - OHPLBJKB_00967 0.10 -1.6
1,000,153 + OHPLBJKB_00967 0.32 -0.4
1,000,204 + OHPLBJKB_00967 0.36 -0.4
1,000,204 + OHPLBJKB_00967 0.36 -2.0
1,000,205 - OHPLBJKB_00967 0.36 -0.8
1,000,205 - OHPLBJKB_00967 0.36 -1.7
1,000,205 - OHPLBJKB_00967 0.36 -0.8
1,000,205 - OHPLBJKB_00967 0.36 -2.8
1,000,205 - OHPLBJKB_00967 0.36 -0.8
1,000,346 + OHPLBJKB_00967 0.48 -0.0
1,000,346 + OHPLBJKB_00967 0.48 -0.6
1,000,346 + OHPLBJKB_00967 0.48 +1.0
1,000,346 + OHPLBJKB_00967 0.48 -0.3
1,000,347 - OHPLBJKB_00967 0.48 +1.0
1,000,347 - OHPLBJKB_00967 0.48 -0.4
1,000,347 - OHPLBJKB_00967 0.48 +1.6
1,000,347 - OHPLBJKB_00967 0.48 -0.7
1,000,347 - OHPLBJKB_00967 0.48 +0.3
1,000,349 + OHPLBJKB_00967 0.48 -0.0
1,000,349 + OHPLBJKB_00967 0.48 -1.0
1,000,350 - OHPLBJKB_00967 0.48 -1.8
1,000,351 + OHPLBJKB_00967 0.48 -2.4
1,000,352 - OHPLBJKB_00967 0.48 -0.2
1,000,352 - OHPLBJKB_00967 0.48 -0.2
1,000,352 - OHPLBJKB_00967 0.48 -2.2
1,000,445 + OHPLBJKB_00967 0.55 +2.0

Or see this region's nucleotide sequence