Experiment: hib MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00852 and OHPLBJKB_00853 are separated by 22 nucleotides OHPLBJKB_00853 and OHPLBJKB_00854 are separated by 254 nucleotides
OHPLBJKB_00852: OHPLBJKB_00852 - hypothetical protein, at 884,641 to 886,185
_00852
OHPLBJKB_00853: OHPLBJKB_00853 - hypothetical protein, at 886,208 to 886,486
_00853
OHPLBJKB_00854: OHPLBJKB_00854 - IS3 family transposase ISEhe3, at 886,741 to 887,355
_00854
Position (kb) 886
887 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 885.271 kb on - strand, within OHPLBJKB_00852 at 885.271 kb on - strand, within OHPLBJKB_00852 at 885.287 kb on + strand, within OHPLBJKB_00852 at 885.287 kb on + strand, within OHPLBJKB_00852 at 885.287 kb on + strand, within OHPLBJKB_00852 at 885.288 kb on - strand, within OHPLBJKB_00852 at 885.310 kb on - strand, within OHPLBJKB_00852 at 885.311 kb on + strand, within OHPLBJKB_00852 at 885.311 kb on + strand, within OHPLBJKB_00852 at 885.311 kb on + strand, within OHPLBJKB_00852 at 885.311 kb on + strand, within OHPLBJKB_00852 at 885.311 kb on + strand, within OHPLBJKB_00852 at 885.311 kb on + strand, within OHPLBJKB_00852 at 885.311 kb on + strand, within OHPLBJKB_00852 at 885.312 kb on - strand, within OHPLBJKB_00852 at 885.312 kb on - strand, within OHPLBJKB_00852 at 885.312 kb on - strand, within OHPLBJKB_00852 at 885.312 kb on - strand, within OHPLBJKB_00852 at 885.331 kb on - strand, within OHPLBJKB_00852 at 885.333 kb on + strand, within OHPLBJKB_00852 at 885.333 kb on + strand, within OHPLBJKB_00852 at 885.333 kb on + strand, within OHPLBJKB_00852 at 885.333 kb on + strand, within OHPLBJKB_00852 at 885.334 kb on - strand, within OHPLBJKB_00852 at 885.334 kb on - strand, within OHPLBJKB_00852 at 885.416 kb on - strand, within OHPLBJKB_00852 at 885.512 kb on + strand, within OHPLBJKB_00852 at 885.618 kb on + strand, within OHPLBJKB_00852 at 885.635 kb on + strand, within OHPLBJKB_00852 at 885.654 kb on - strand, within OHPLBJKB_00852 at 885.720 kb on + strand, within OHPLBJKB_00852 at 885.720 kb on + strand, within OHPLBJKB_00852 at 885.721 kb on - strand, within OHPLBJKB_00852 at 885.727 kb on - strand, within OHPLBJKB_00852 at 885.727 kb on - strand, within OHPLBJKB_00852 at 885.752 kb on + strand, within OHPLBJKB_00852 at 885.834 kb on + strand, within OHPLBJKB_00852 at 886.066 kb on - strand at 886.117 kb on + strand at 886.117 kb on + strand at 886.117 kb on + strand at 886.117 kb on + strand at 886.117 kb on + strand at 886.117 kb on + strand at 886.119 kb on + strand at 886.120 kb on - strand at 886.123 kb on + strand at 886.123 kb on + strand at 886.124 kb on - strand at 886.124 kb on - strand at 886.124 kb on - strand at 887.478 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction hib MOI1 remove 885,271 - OHPLBJKB_00852 0.41 -0.7 885,271 - OHPLBJKB_00852 0.41 -0.1 885,287 + OHPLBJKB_00852 0.42 -1.2 885,287 + OHPLBJKB_00852 0.42 +2.3 885,287 + OHPLBJKB_00852 0.42 -2.2 885,288 - OHPLBJKB_00852 0.42 -0.0 885,310 - OHPLBJKB_00852 0.43 -0.2 885,311 + OHPLBJKB_00852 0.43 -2.0 885,311 + OHPLBJKB_00852 0.43 +3.7 885,311 + OHPLBJKB_00852 0.43 +0.2 885,311 + OHPLBJKB_00852 0.43 +0.7 885,311 + OHPLBJKB_00852 0.43 -2.6 885,311 + OHPLBJKB_00852 0.43 -1.3 885,311 + OHPLBJKB_00852 0.43 +0.5 885,312 - OHPLBJKB_00852 0.43 +1.5 885,312 - OHPLBJKB_00852 0.43 -0.7 885,312 - OHPLBJKB_00852 0.43 -1.6 885,312 - OHPLBJKB_00852 0.43 -1.0 885,331 - OHPLBJKB_00852 0.45 -0.6 885,333 + OHPLBJKB_00852 0.45 -1.9 885,333 + OHPLBJKB_00852 0.45 +0.3 885,333 + OHPLBJKB_00852 0.45 -2.6 885,333 + OHPLBJKB_00852 0.45 +1.5 885,334 - OHPLBJKB_00852 0.45 +0.6 885,334 - OHPLBJKB_00852 0.45 +2.3 885,416 - OHPLBJKB_00852 0.50 +1.9 885,512 + OHPLBJKB_00852 0.56 -1.3 885,618 + OHPLBJKB_00852 0.63 +2.0 885,635 + OHPLBJKB_00852 0.64 +0.4 885,654 - OHPLBJKB_00852 0.66 -1.0 885,720 + OHPLBJKB_00852 0.70 +0.5 885,720 + OHPLBJKB_00852 0.70 +1.3 885,721 - OHPLBJKB_00852 0.70 -0.8 885,727 - OHPLBJKB_00852 0.70 +0.5 885,727 - OHPLBJKB_00852 0.70 -1.3 885,752 + OHPLBJKB_00852 0.72 -1.4 885,834 + OHPLBJKB_00852 0.77 -2.7 886,066 - -1.8 886,117 + +1.9 886,117 + -0.5 886,117 + -0.0 886,117 + -0.4 886,117 + -0.5 886,117 + -1.8 886,119 + +2.0 886,120 - +0.4 886,123 + -0.7 886,123 + +0.1 886,124 - -3.0 886,124 - -0.8 886,124 - -1.8 887,478 - +2.1
Or see this region's nucleotide sequence