Experiment: hib MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00831 and OHPLBJKB_00832 are separated by 35 nucleotides OHPLBJKB_00832 and OHPLBJKB_00833 are separated by 17 nucleotides
OHPLBJKB_00831: OHPLBJKB_00831 - Guanine/hypoxanthine permease GhxQ, at 854,899 to 856,266
_00831
OHPLBJKB_00832: OHPLBJKB_00832 - Guanine deaminase, at 856,302 to 857,618
_00832
OHPLBJKB_00833: OHPLBJKB_00833 - Xanthine permease XanQ, at 857,636 to 859,036
_00833
Position (kb) 856
857
858 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 855.337 kb on + strand, within OHPLBJKB_00831 at 855.337 kb on + strand, within OHPLBJKB_00831 at 855.338 kb on - strand, within OHPLBJKB_00831 at 855.501 kb on + strand, within OHPLBJKB_00831 at 855.528 kb on + strand, within OHPLBJKB_00831 at 855.528 kb on + strand, within OHPLBJKB_00831 at 855.529 kb on - strand, within OHPLBJKB_00831 at 855.529 kb on - strand, within OHPLBJKB_00831 at 855.572 kb on + strand, within OHPLBJKB_00831 at 855.573 kb on - strand, within OHPLBJKB_00831 at 855.618 kb on + strand, within OHPLBJKB_00831 at 855.712 kb on - strand, within OHPLBJKB_00831 at 855.762 kb on + strand, within OHPLBJKB_00831 at 855.762 kb on + strand, within OHPLBJKB_00831 at 855.843 kb on + strand, within OHPLBJKB_00831 at 855.844 kb on - strand, within OHPLBJKB_00831 at 855.844 kb on - strand, within OHPLBJKB_00831 at 855.848 kb on - strand, within OHPLBJKB_00831 at 855.848 kb on - strand, within OHPLBJKB_00831 at 855.858 kb on + strand, within OHPLBJKB_00831 at 855.858 kb on + strand, within OHPLBJKB_00831 at 855.859 kb on - strand, within OHPLBJKB_00831 at 855.967 kb on - strand, within OHPLBJKB_00831 at 856.127 kb on + strand, within OHPLBJKB_00831 at 856.127 kb on + strand, within OHPLBJKB_00831 at 856.127 kb on + strand, within OHPLBJKB_00831 at 856.162 kb on + strand at 856.162 kb on + strand at 856.162 kb on + strand at 856.163 kb on - strand at 856.163 kb on - strand at 856.163 kb on - strand at 856.163 kb on - strand at 856.163 kb on - strand at 856.200 kb on + strand at 856.205 kb on + strand at 856.205 kb on + strand at 856.206 kb on - strand at 856.206 kb on - strand at 856.249 kb on + strand at 856.250 kb on - strand at 856.250 kb on - strand at 856.266 kb on + strand at 856.266 kb on + strand at 856.266 kb on + strand at 856.266 kb on + strand at 856.266 kb on + strand at 856.266 kb on + strand at 856.266 kb on + strand at 856.266 kb on + strand at 856.266 kb on + strand at 856.266 kb on + strand at 856.266 kb on + strand at 856.267 kb on - strand at 856.267 kb on - strand at 856.267 kb on - strand at 856.267 kb on - strand at 856.267 kb on - strand at 856.267 kb on - strand at 856.267 kb on - strand at 856.267 kb on - strand at 856.267 kb on - strand at 856.289 kb on + strand at 856.300 kb on + strand at 856.300 kb on + strand at 856.303 kb on + strand at 856.303 kb on + strand at 856.303 kb on + strand at 856.303 kb on + strand at 856.304 kb on - strand at 856.304 kb on - strand at 856.315 kb on + strand at 856.336 kb on + strand at 856.336 kb on + strand at 856.336 kb on + strand at 856.336 kb on + strand at 856.336 kb on + strand at 856.337 kb on - strand at 856.337 kb on - strand at 856.337 kb on - strand at 856.337 kb on - strand at 856.345 kb on + strand at 856.346 kb on - strand at 856.396 kb on - strand at 856.479 kb on + strand, within OHPLBJKB_00832 at 856.541 kb on - strand, within OHPLBJKB_00832 at 856.553 kb on - strand, within OHPLBJKB_00832 at 856.575 kb on + strand, within OHPLBJKB_00832 at 856.576 kb on - strand, within OHPLBJKB_00832 at 856.576 kb on - strand, within OHPLBJKB_00832 at 856.576 kb on - strand, within OHPLBJKB_00832 at 856.584 kb on + strand, within OHPLBJKB_00832 at 856.585 kb on - strand, within OHPLBJKB_00832 at 856.585 kb on - strand, within OHPLBJKB_00832 at 856.591 kb on + strand, within OHPLBJKB_00832 at 856.696 kb on - strand, within OHPLBJKB_00832 at 856.837 kb on + strand, within OHPLBJKB_00832 at 856.916 kb on + strand, within OHPLBJKB_00832 at 856.917 kb on - strand, within OHPLBJKB_00832 at 856.917 kb on - strand, within OHPLBJKB_00832 at 856.920 kb on + strand, within OHPLBJKB_00832 at 856.921 kb on - strand, within OHPLBJKB_00832 at 857.012 kb on - strand, within OHPLBJKB_00832 at 857.012 kb on - strand, within OHPLBJKB_00832 at 857.013 kb on + strand, within OHPLBJKB_00832 at 857.013 kb on + strand, within OHPLBJKB_00832 at 857.013 kb on + strand, within OHPLBJKB_00832 at 857.014 kb on - strand, within OHPLBJKB_00832 at 857.014 kb on - strand, within OHPLBJKB_00832 at 857.014 kb on - strand, within OHPLBJKB_00832 at 857.014 kb on - strand, within OHPLBJKB_00832 at 857.014 kb on - strand, within OHPLBJKB_00832 at 857.014 kb on - strand, within OHPLBJKB_00832 at 857.093 kb on - strand, within OHPLBJKB_00832 at 857.135 kb on + strand, within OHPLBJKB_00832 at 857.135 kb on + strand, within OHPLBJKB_00832 at 857.135 kb on + strand, within OHPLBJKB_00832 at 857.135 kb on + strand, within OHPLBJKB_00832 at 857.136 kb on - strand, within OHPLBJKB_00832 at 857.136 kb on - strand, within OHPLBJKB_00832 at 857.136 kb on - strand, within OHPLBJKB_00832 at 857.136 kb on - strand, within OHPLBJKB_00832 at 857.136 kb on - strand, within OHPLBJKB_00832 at 857.147 kb on + strand, within OHPLBJKB_00832 at 857.226 kb on - strand, within OHPLBJKB_00832 at 857.230 kb on - strand, within OHPLBJKB_00832 at 857.274 kb on + strand, within OHPLBJKB_00832 at 857.274 kb on + strand, within OHPLBJKB_00832 at 857.274 kb on + strand, within OHPLBJKB_00832 at 857.275 kb on - strand, within OHPLBJKB_00832 at 857.275 kb on - strand, within OHPLBJKB_00832 at 857.297 kb on + strand, within OHPLBJKB_00832 at 857.313 kb on - strand, within OHPLBJKB_00832 at 857.313 kb on - strand, within OHPLBJKB_00832 at 857.342 kb on - strand, within OHPLBJKB_00832 at 857.375 kb on + strand, within OHPLBJKB_00832 at 857.375 kb on + strand, within OHPLBJKB_00832 at 857.375 kb on + strand, within OHPLBJKB_00832 at 857.375 kb on + strand, within OHPLBJKB_00832 at 857.375 kb on + strand, within OHPLBJKB_00832 at 857.376 kb on - strand, within OHPLBJKB_00832 at 857.376 kb on - strand, within OHPLBJKB_00832 at 857.376 kb on - strand, within OHPLBJKB_00832 at 857.400 kb on + strand, within OHPLBJKB_00832 at 857.401 kb on - strand, within OHPLBJKB_00832 at 857.401 kb on - strand, within OHPLBJKB_00832 at 857.496 kb on - strand at 857.505 kb on + strand at 857.505 kb on + strand at 857.506 kb on - strand at 857.506 kb on - strand at 857.561 kb on + strand at 857.576 kb on + strand at 857.576 kb on + strand at 857.577 kb on - strand at 857.577 kb on - strand at 857.589 kb on + strand at 857.599 kb on - strand at 857.631 kb on + strand at 857.631 kb on + strand at 857.631 kb on + strand at 857.632 kb on - strand at 857.659 kb on + strand at 857.659 kb on + strand at 857.660 kb on - strand at 857.660 kb on - strand at 857.660 kb on - strand at 857.663 kb on - strand at 857.707 kb on + strand at 857.708 kb on - strand at 857.708 kb on - strand at 857.708 kb on - strand at 857.708 kb on - strand at 857.708 kb on - strand at 857.712 kb on - strand at 857.714 kb on + strand at 857.714 kb on + strand at 857.744 kb on - strand at 857.756 kb on + strand at 857.756 kb on + strand at 857.756 kb on + strand at 857.757 kb on - strand at 857.759 kb on + strand at 857.759 kb on + strand at 857.760 kb on - strand at 857.760 kb on - strand at 857.763 kb on + strand at 857.763 kb on + strand at 857.763 kb on + strand at 857.763 kb on + strand at 857.763 kb on + strand at 857.763 kb on + strand at 857.764 kb on - strand at 857.764 kb on - strand at 857.764 kb on - strand at 857.764 kb on - strand at 857.764 kb on - strand at 857.764 kb on - strand at 857.764 kb on - strand at 857.764 kb on - strand at 857.764 kb on - strand at 857.768 kb on - strand at 857.768 kb on - strand at 857.780 kb on + strand, within OHPLBJKB_00833 at 857.803 kb on - strand, within OHPLBJKB_00833 at 857.819 kb on + strand, within OHPLBJKB_00833 at 857.820 kb on - strand, within OHPLBJKB_00833 at 857.820 kb on - strand, within OHPLBJKB_00833 at 857.826 kb on - strand, within OHPLBJKB_00833 at 857.842 kb on + strand, within OHPLBJKB_00833 at 857.842 kb on + strand, within OHPLBJKB_00833 at 857.842 kb on + strand, within OHPLBJKB_00833 at 857.843 kb on - strand, within OHPLBJKB_00833 at 857.843 kb on - strand, within OHPLBJKB_00833 at 857.843 kb on - strand, within OHPLBJKB_00833 at 857.981 kb on + strand, within OHPLBJKB_00833 at 857.982 kb on - strand, within OHPLBJKB_00833 at 858.003 kb on - strand, within OHPLBJKB_00833 at 858.024 kb on + strand, within OHPLBJKB_00833 at 858.061 kb on + strand, within OHPLBJKB_00833 at 858.086 kb on + strand, within OHPLBJKB_00833 at 858.160 kb on - strand, within OHPLBJKB_00833 at 858.232 kb on + strand, within OHPLBJKB_00833 at 858.275 kb on - strand, within OHPLBJKB_00833 at 858.280 kb on + strand, within OHPLBJKB_00833 at 858.281 kb on - strand, within OHPLBJKB_00833 at 858.289 kb on - strand, within OHPLBJKB_00833 at 858.370 kb on + strand, within OHPLBJKB_00833 at 858.372 kb on + strand, within OHPLBJKB_00833 at 858.383 kb on + strand, within OHPLBJKB_00833 at 858.383 kb on + strand, within OHPLBJKB_00833 at 858.452 kb on + strand, within OHPLBJKB_00833 at 858.452 kb on + strand, within OHPLBJKB_00833 at 858.452 kb on + strand, within OHPLBJKB_00833 at 858.452 kb on + strand, within OHPLBJKB_00833 at 858.453 kb on - strand, within OHPLBJKB_00833 at 858.453 kb on - strand, within OHPLBJKB_00833 at 858.462 kb on - strand, within OHPLBJKB_00833 at 858.483 kb on + strand, within OHPLBJKB_00833 at 858.483 kb on + strand, within OHPLBJKB_00833 at 858.484 kb on - strand, within OHPLBJKB_00833 at 858.484 kb on - strand, within OHPLBJKB_00833 at 858.496 kb on + strand, within OHPLBJKB_00833 at 858.557 kb on + strand, within OHPLBJKB_00833 at 858.558 kb on - strand, within OHPLBJKB_00833 at 858.581 kb on - strand, within OHPLBJKB_00833 at 858.611 kb on + strand, within OHPLBJKB_00833 at 858.611 kb on + strand, within OHPLBJKB_00833 at 858.612 kb on - strand, within OHPLBJKB_00833 at 858.612 kb on - strand, within OHPLBJKB_00833
Per-strain Table
Position Strand Gene LocusTag Fraction hib MOI1 remove 855,337 + OHPLBJKB_00831 0.32 -1.3 855,337 + OHPLBJKB_00831 0.32 +0.2 855,338 - OHPLBJKB_00831 0.32 -0.3 855,501 + OHPLBJKB_00831 0.44 -0.1 855,528 + OHPLBJKB_00831 0.46 -0.9 855,528 + OHPLBJKB_00831 0.46 -1.0 855,529 - OHPLBJKB_00831 0.46 +1.1 855,529 - OHPLBJKB_00831 0.46 -1.4 855,572 + OHPLBJKB_00831 0.49 +1.3 855,573 - OHPLBJKB_00831 0.49 -1.3 855,618 + OHPLBJKB_00831 0.53 +6.1 855,712 - OHPLBJKB_00831 0.59 -0.0 855,762 + OHPLBJKB_00831 0.63 -1.1 855,762 + OHPLBJKB_00831 0.63 -1.9 855,843 + OHPLBJKB_00831 0.69 -2.6 855,844 - OHPLBJKB_00831 0.69 -0.8 855,844 - OHPLBJKB_00831 0.69 -2.6 855,848 - OHPLBJKB_00831 0.69 -1.5 855,848 - OHPLBJKB_00831 0.69 -0.2 855,858 + OHPLBJKB_00831 0.70 +0.2 855,858 + OHPLBJKB_00831 0.70 -0.5 855,859 - OHPLBJKB_00831 0.70 -1.0 855,967 - OHPLBJKB_00831 0.78 -1.7 856,127 + OHPLBJKB_00831 0.90 +0.3 856,127 + OHPLBJKB_00831 0.90 +0.4 856,127 + OHPLBJKB_00831 0.90 -0.1 856,162 + +0.3 856,162 + +1.6 856,162 + +0.2 856,163 - +1.2 856,163 - -1.6 856,163 - -0.0 856,163 - -0.3 856,163 - +1.1 856,200 + -1.5 856,205 + -0.7 856,205 + -1.7 856,206 - +0.3 856,206 - +0.3 856,249 + -0.6 856,250 - -0.7 856,250 - -0.5 856,266 + -0.4 856,266 + -0.1 856,266 + +1.1 856,266 + -0.6 856,266 + +0.1 856,266 + +0.7 856,266 + -0.9 856,266 + -1.1 856,266 + +0.1 856,266 + +0.9 856,266 + +0.6 856,267 - -0.2 856,267 - -0.8 856,267 - +0.0 856,267 - +0.3 856,267 - -0.0 856,267 - -0.1 856,267 - +0.7 856,267 - +0.4 856,267 - +0.9 856,289 + -0.3 856,300 + -2.9 856,300 + -2.9 856,303 + -1.5 856,303 + +0.9 856,303 + -1.4 856,303 + -1.3 856,304 - -0.4 856,304 - -1.4 856,315 + -0.1 856,336 + -2.2 856,336 + -1.8 856,336 + -1.0 856,336 + +2.0 856,336 + -0.7 856,337 - -1.4 856,337 - +0.5 856,337 - -2.8 856,337 - -2.6 856,345 + +1.2 856,346 - -1.2 856,396 - +2.4 856,479 + OHPLBJKB_00832 0.13 +2.4 856,541 - OHPLBJKB_00832 0.18 -1.3 856,553 - OHPLBJKB_00832 0.19 -1.0 856,575 + OHPLBJKB_00832 0.21 +0.4 856,576 - OHPLBJKB_00832 0.21 +2.4 856,576 - OHPLBJKB_00832 0.21 -0.9 856,576 - OHPLBJKB_00832 0.21 -0.8 856,584 + OHPLBJKB_00832 0.21 +1.4 856,585 - OHPLBJKB_00832 0.21 -0.1 856,585 - OHPLBJKB_00832 0.21 -1.9 856,591 + OHPLBJKB_00832 0.22 -1.7 856,696 - OHPLBJKB_00832 0.30 -0.1 856,837 + OHPLBJKB_00832 0.41 -2.1 856,916 + OHPLBJKB_00832 0.47 -2.4 856,917 - OHPLBJKB_00832 0.47 +1.2 856,917 - OHPLBJKB_00832 0.47 -1.4 856,920 + OHPLBJKB_00832 0.47 +0.1 856,921 - OHPLBJKB_00832 0.47 -0.1 857,012 - OHPLBJKB_00832 0.54 +0.6 857,012 - OHPLBJKB_00832 0.54 +1.8 857,013 + OHPLBJKB_00832 0.54 -2.8 857,013 + OHPLBJKB_00832 0.54 +0.1 857,013 + OHPLBJKB_00832 0.54 -0.9 857,014 - OHPLBJKB_00832 0.54 +2.2 857,014 - OHPLBJKB_00832 0.54 -2.7 857,014 - OHPLBJKB_00832 0.54 -2.1 857,014 - OHPLBJKB_00832 0.54 -1.4 857,014 - OHPLBJKB_00832 0.54 +6.4 857,014 - OHPLBJKB_00832 0.54 -0.0 857,093 - OHPLBJKB_00832 0.60 +0.9 857,135 + OHPLBJKB_00832 0.63 +1.9 857,135 + OHPLBJKB_00832 0.63 -0.5 857,135 + OHPLBJKB_00832 0.63 -1.0 857,135 + OHPLBJKB_00832 0.63 +1.2 857,136 - OHPLBJKB_00832 0.63 +1.4 857,136 - OHPLBJKB_00832 0.63 -0.5 857,136 - OHPLBJKB_00832 0.63 -0.9 857,136 - OHPLBJKB_00832 0.63 +0.4 857,136 - OHPLBJKB_00832 0.63 -0.3 857,147 + OHPLBJKB_00832 0.64 +1.2 857,226 - OHPLBJKB_00832 0.70 +0.7 857,230 - OHPLBJKB_00832 0.70 -2.1 857,274 + OHPLBJKB_00832 0.74 +0.8 857,274 + OHPLBJKB_00832 0.74 +0.6 857,274 + OHPLBJKB_00832 0.74 -0.2 857,275 - OHPLBJKB_00832 0.74 -2.9 857,275 - OHPLBJKB_00832 0.74 -0.7 857,297 + OHPLBJKB_00832 0.76 +1.4 857,313 - OHPLBJKB_00832 0.77 -0.3 857,313 - OHPLBJKB_00832 0.77 -0.0 857,342 - OHPLBJKB_00832 0.79 -0.8 857,375 + OHPLBJKB_00832 0.81 -0.3 857,375 + OHPLBJKB_00832 0.81 +0.9 857,375 + OHPLBJKB_00832 0.81 -0.3 857,375 + OHPLBJKB_00832 0.81 +0.7 857,375 + OHPLBJKB_00832 0.81 +1.2 857,376 - OHPLBJKB_00832 0.82 +0.3 857,376 - OHPLBJKB_00832 0.82 -0.6 857,376 - OHPLBJKB_00832 0.82 -2.3 857,400 + OHPLBJKB_00832 0.83 -0.6 857,401 - OHPLBJKB_00832 0.83 -0.0 857,401 - OHPLBJKB_00832 0.83 +0.8 857,496 - +1.0 857,505 + +0.9 857,505 + -1.5 857,506 - -1.3 857,506 - -0.7 857,561 + +0.0 857,576 + -3.2 857,576 + -0.6 857,577 - -1.1 857,577 - +0.6 857,589 + -1.6 857,599 - -2.1 857,631 + +2.0 857,631 + +1.0 857,631 + -2.3 857,632 - +0.3 857,659 + +0.2 857,659 + -2.3 857,660 - +0.2 857,660 - +1.1 857,660 - +0.8 857,663 - +0.5 857,707 + +1.2 857,708 - +2.2 857,708 - -0.9 857,708 - -2.1 857,708 - -1.1 857,708 - +0.6 857,712 - -1.3 857,714 + -0.8 857,714 + -0.7 857,744 - +0.3 857,756 + -0.9 857,756 + -1.2 857,756 + -0.1 857,757 - +0.1 857,759 + +0.4 857,759 + +1.2 857,760 - +0.8 857,760 - +0.3 857,763 + -1.0 857,763 + +0.4 857,763 + +1.0 857,763 + -0.2 857,763 + +0.0 857,763 + -1.3 857,764 - -0.1 857,764 - +1.3 857,764 - +2.4 857,764 - -1.7 857,764 - -2.5 857,764 - +0.7 857,764 - +0.4 857,764 - +1.2 857,764 - +0.3 857,768 - -1.3 857,768 - -0.6 857,780 + OHPLBJKB_00833 0.10 -0.4 857,803 - OHPLBJKB_00833 0.12 -2.5 857,819 + OHPLBJKB_00833 0.13 -1.4 857,820 - OHPLBJKB_00833 0.13 +0.1 857,820 - OHPLBJKB_00833 0.13 +1.4 857,826 - OHPLBJKB_00833 0.14 +0.3 857,842 + OHPLBJKB_00833 0.15 -2.6 857,842 + OHPLBJKB_00833 0.15 +0.4 857,842 + OHPLBJKB_00833 0.15 -0.5 857,843 - OHPLBJKB_00833 0.15 -2.3 857,843 - OHPLBJKB_00833 0.15 +1.1 857,843 - OHPLBJKB_00833 0.15 +1.5 857,981 + OHPLBJKB_00833 0.25 +0.0 857,982 - OHPLBJKB_00833 0.25 -1.5 858,003 - OHPLBJKB_00833 0.26 +2.4 858,024 + OHPLBJKB_00833 0.28 -1.4 858,061 + OHPLBJKB_00833 0.30 -0.4 858,086 + OHPLBJKB_00833 0.32 +1.1 858,160 - OHPLBJKB_00833 0.37 +1.0 858,232 + OHPLBJKB_00833 0.43 +0.5 858,275 - OHPLBJKB_00833 0.46 +0.4 858,280 + OHPLBJKB_00833 0.46 +0.1 858,281 - OHPLBJKB_00833 0.46 -0.7 858,289 - OHPLBJKB_00833 0.47 +0.9 858,370 + OHPLBJKB_00833 0.52 -1.5 858,372 + OHPLBJKB_00833 0.53 -1.3 858,383 + OHPLBJKB_00833 0.53 -0.6 858,383 + OHPLBJKB_00833 0.53 -0.2 858,452 + OHPLBJKB_00833 0.58 -2.3 858,452 + OHPLBJKB_00833 0.58 -0.2 858,452 + OHPLBJKB_00833 0.58 +0.4 858,452 + OHPLBJKB_00833 0.58 +1.0 858,453 - OHPLBJKB_00833 0.58 +2.3 858,453 - OHPLBJKB_00833 0.58 +0.9 858,462 - OHPLBJKB_00833 0.59 -0.9 858,483 + OHPLBJKB_00833 0.60 -0.1 858,483 + OHPLBJKB_00833 0.60 +1.2 858,484 - OHPLBJKB_00833 0.61 -1.1 858,484 - OHPLBJKB_00833 0.61 -0.3 858,496 + OHPLBJKB_00833 0.61 -0.0 858,557 + OHPLBJKB_00833 0.66 +0.1 858,558 - OHPLBJKB_00833 0.66 +2.4 858,581 - OHPLBJKB_00833 0.67 -0.1 858,611 + OHPLBJKB_00833 0.70 +0.1 858,611 + OHPLBJKB_00833 0.70 -1.3 858,612 - OHPLBJKB_00833 0.70 -1.4 858,612 - OHPLBJKB_00833 0.70 +0.4
Or see this region's nucleotide sequence