Experiment: hib MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00693 and OHPLBJKB_00694 are separated by 251 nucleotides OHPLBJKB_00694 and OHPLBJKB_00695 are separated by 6 nucleotides OHPLBJKB_00695 and OHPLBJKB_00696 are separated by 271 nucleotides
OHPLBJKB_00693: OHPLBJKB_00693 - Cystathionine beta-lyase MetC, at 712,647 to 713,834
_00693
OHPLBJKB_00694: OHPLBJKB_00694 - Biopolymer transport protein ExbB, at 714,086 to 714,820
_00694
OHPLBJKB_00695: OHPLBJKB_00695 - Biopolymer transport protein ExbD, at 714,827 to 715,252
_00695
OHPLBJKB_00696: OHPLBJKB_00696 - putative oxidoreductase YghA, at 715,524 to 716,408
_00696
Position (kb) 714
715
716 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 713.883 kb on - strand at 713.955 kb on - strand at 713.961 kb on + strand at 713.995 kb on + strand at 713.995 kb on + strand at 713.996 kb on - strand at 713.996 kb on - strand at 714.004 kb on - strand at 714.004 kb on - strand at 714.004 kb on - strand at 714.044 kb on + strand at 714.044 kb on + strand at 714.044 kb on + strand at 714.044 kb on + strand at 714.045 kb on - strand at 714.045 kb on - strand at 714.048 kb on - strand at 714.080 kb on + strand at 714.081 kb on - strand at 714.092 kb on - strand at 714.095 kb on - strand at 714.095 kb on - strand at 714.127 kb on + strand at 714.127 kb on + strand at 714.128 kb on - strand at 714.128 kb on - strand at 714.131 kb on + strand at 714.132 kb on - strand at 714.154 kb on + strand at 714.154 kb on + strand at 714.176 kb on - strand, within OHPLBJKB_00694 at 714.214 kb on + strand, within OHPLBJKB_00694 at 714.288 kb on + strand, within OHPLBJKB_00694 at 714.322 kb on + strand, within OHPLBJKB_00694 at 714.333 kb on + strand, within OHPLBJKB_00694 at 714.333 kb on + strand, within OHPLBJKB_00694 at 714.403 kb on + strand, within OHPLBJKB_00694 at 714.404 kb on - strand, within OHPLBJKB_00694 at 714.404 kb on - strand, within OHPLBJKB_00694 at 714.406 kb on + strand, within OHPLBJKB_00694 at 714.406 kb on + strand, within OHPLBJKB_00694 at 714.407 kb on - strand, within OHPLBJKB_00694 at 714.407 kb on - strand, within OHPLBJKB_00694 at 714.415 kb on + strand, within OHPLBJKB_00694 at 714.527 kb on - strand, within OHPLBJKB_00694 at 714.554 kb on - strand, within OHPLBJKB_00694 at 714.581 kb on - strand, within OHPLBJKB_00694 at 714.668 kb on + strand, within OHPLBJKB_00694 at 714.668 kb on + strand, within OHPLBJKB_00694 at 714.668 kb on + strand, within OHPLBJKB_00694 at 714.668 kb on + strand, within OHPLBJKB_00694 at 714.668 kb on + strand, within OHPLBJKB_00694 at 714.668 kb on + strand, within OHPLBJKB_00694 at 714.669 kb on - strand, within OHPLBJKB_00694 at 714.669 kb on - strand, within OHPLBJKB_00694 at 714.669 kb on - strand, within OHPLBJKB_00694 at 714.669 kb on - strand, within OHPLBJKB_00694 at 714.669 kb on - strand, within OHPLBJKB_00694 at 714.669 kb on - strand, within OHPLBJKB_00694 at 714.669 kb on - strand, within OHPLBJKB_00694 at 714.675 kb on + strand, within OHPLBJKB_00694 at 714.675 kb on + strand, within OHPLBJKB_00694 at 714.676 kb on - strand, within OHPLBJKB_00694 at 714.676 kb on - strand, within OHPLBJKB_00694 at 714.700 kb on + strand, within OHPLBJKB_00694 at 714.732 kb on + strand, within OHPLBJKB_00694 at 714.732 kb on + strand, within OHPLBJKB_00694 at 714.732 kb on + strand, within OHPLBJKB_00694 at 714.733 kb on - strand, within OHPLBJKB_00694 at 714.733 kb on - strand, within OHPLBJKB_00694 at 714.819 kb on - strand at 714.822 kb on - strand at 714.842 kb on - strand at 714.842 kb on - strand at 714.922 kb on + strand, within OHPLBJKB_00695 at 714.923 kb on - strand, within OHPLBJKB_00695 at 714.928 kb on + strand, within OHPLBJKB_00695 at 714.929 kb on - strand, within OHPLBJKB_00695 at 714.954 kb on + strand, within OHPLBJKB_00695 at 714.983 kb on - strand, within OHPLBJKB_00695 at 714.983 kb on - strand, within OHPLBJKB_00695 at 715.020 kb on - strand, within OHPLBJKB_00695 at 715.051 kb on + strand, within OHPLBJKB_00695 at 715.087 kb on + strand, within OHPLBJKB_00695 at 715.161 kb on - strand, within OHPLBJKB_00695 at 715.186 kb on + strand, within OHPLBJKB_00695 at 715.215 kb on + strand at 715.216 kb on - strand at 715.216 kb on - strand at 715.250 kb on + strand at 715.288 kb on + strand at 715.363 kb on + strand at 715.363 kb on + strand at 715.472 kb on + strand at 715.530 kb on + strand at 715.530 kb on + strand at 715.573 kb on + strand at 715.573 kb on + strand at 715.573 kb on + strand at 715.573 kb on + strand at 715.574 kb on - strand at 715.574 kb on - strand at 715.574 kb on - strand at 715.597 kb on + strand at 715.597 kb on + strand at 715.598 kb on - strand at 715.603 kb on + strand at 715.603 kb on + strand at 715.603 kb on + strand at 715.603 kb on + strand at 715.603 kb on + strand at 715.603 kb on + strand at 715.603 kb on + strand at 715.604 kb on - strand at 715.604 kb on - strand at 715.604 kb on - strand at 715.604 kb on - strand at 715.604 kb on - strand at 715.604 kb on - strand at 715.604 kb on - strand at 715.604 kb on - strand at 715.605 kb on + strand at 715.605 kb on + strand at 715.605 kb on + strand at 715.605 kb on + strand at 715.605 kb on + strand at 715.605 kb on + strand at 715.605 kb on + strand at 715.605 kb on + strand at 715.605 kb on + strand at 715.605 kb on + strand at 715.605 kb on + strand at 715.605 kb on + strand at 715.606 kb on - strand at 715.606 kb on - strand at 715.606 kb on - strand at 715.606 kb on - strand at 715.606 kb on - strand at 715.606 kb on - strand at 715.606 kb on - strand at 715.606 kb on - strand at 715.606 kb on - strand at 715.606 kb on - strand at 715.674 kb on - strand, within OHPLBJKB_00696 at 715.674 kb on - strand, within OHPLBJKB_00696 at 715.733 kb on + strand, within OHPLBJKB_00696 at 715.733 kb on + strand, within OHPLBJKB_00696 at 715.734 kb on - strand, within OHPLBJKB_00696 at 715.783 kb on + strand, within OHPLBJKB_00696 at 715.783 kb on + strand, within OHPLBJKB_00696 at 715.814 kb on - strand, within OHPLBJKB_00696 at 715.821 kb on + strand, within OHPLBJKB_00696 at 715.868 kb on + strand, within OHPLBJKB_00696 at 715.868 kb on + strand, within OHPLBJKB_00696 at 715.868 kb on + strand, within OHPLBJKB_00696 at 715.868 kb on + strand, within OHPLBJKB_00696 at 715.868 kb on + strand, within OHPLBJKB_00696 at 715.868 kb on + strand, within OHPLBJKB_00696 at 715.869 kb on - strand, within OHPLBJKB_00696 at 715.869 kb on - strand, within OHPLBJKB_00696 at 715.869 kb on - strand, within OHPLBJKB_00696 at 715.869 kb on - strand, within OHPLBJKB_00696 at 715.869 kb on - strand, within OHPLBJKB_00696 at 716.015 kb on + strand, within OHPLBJKB_00696 at 716.016 kb on - strand, within OHPLBJKB_00696 at 716.170 kb on + strand, within OHPLBJKB_00696 at 716.170 kb on + strand, within OHPLBJKB_00696 at 716.226 kb on + strand, within OHPLBJKB_00696 at 716.227 kb on - strand, within OHPLBJKB_00696
Per-strain Table
Position Strand Gene LocusTag Fraction hib MOI1 remove 713,883 - +0.8 713,955 - -1.3 713,961 + +1.3 713,995 + -0.8 713,995 + -0.1 713,996 - +1.5 713,996 - +1.0 714,004 - -1.9 714,004 - +1.6 714,004 - -0.4 714,044 + -3.9 714,044 + +0.1 714,044 + -0.8 714,044 + -0.5 714,045 - -1.4 714,045 - +0.0 714,048 - -2.3 714,080 + +0.0 714,081 - -1.3 714,092 - +1.5 714,095 - -0.8 714,095 - -0.6 714,127 + -1.5 714,127 + +1.4 714,128 - -1.7 714,128 - -0.9 714,131 + -2.0 714,132 - -0.6 714,154 + -0.5 714,154 + +1.2 714,176 - OHPLBJKB_00694 0.12 -0.3 714,214 + OHPLBJKB_00694 0.17 -1.9 714,288 + OHPLBJKB_00694 0.27 +2.9 714,322 + OHPLBJKB_00694 0.32 +1.3 714,333 + OHPLBJKB_00694 0.34 -0.3 714,333 + OHPLBJKB_00694 0.34 +1.1 714,403 + OHPLBJKB_00694 0.43 +0.7 714,404 - OHPLBJKB_00694 0.43 -1.3 714,404 - OHPLBJKB_00694 0.43 -1.5 714,406 + OHPLBJKB_00694 0.44 +0.1 714,406 + OHPLBJKB_00694 0.44 -0.4 714,407 - OHPLBJKB_00694 0.44 -1.6 714,407 - OHPLBJKB_00694 0.44 +1.3 714,415 + OHPLBJKB_00694 0.45 -1.3 714,527 - OHPLBJKB_00694 0.60 -1.0 714,554 - OHPLBJKB_00694 0.64 -1.2 714,581 - OHPLBJKB_00694 0.67 -0.6 714,668 + OHPLBJKB_00694 0.79 -3.0 714,668 + OHPLBJKB_00694 0.79 +0.2 714,668 + OHPLBJKB_00694 0.79 -2.0 714,668 + OHPLBJKB_00694 0.79 -1.6 714,668 + OHPLBJKB_00694 0.79 +0.6 714,668 + OHPLBJKB_00694 0.79 -0.9 714,669 - OHPLBJKB_00694 0.79 +0.0 714,669 - OHPLBJKB_00694 0.79 -1.1 714,669 - OHPLBJKB_00694 0.79 -0.8 714,669 - OHPLBJKB_00694 0.79 -3.0 714,669 - OHPLBJKB_00694 0.79 +1.5 714,669 - OHPLBJKB_00694 0.79 +1.1 714,669 - OHPLBJKB_00694 0.79 -0.6 714,675 + OHPLBJKB_00694 0.80 -0.0 714,675 + OHPLBJKB_00694 0.80 -0.6 714,676 - OHPLBJKB_00694 0.80 +0.5 714,676 - OHPLBJKB_00694 0.80 -0.9 714,700 + OHPLBJKB_00694 0.84 -1.0 714,732 + OHPLBJKB_00694 0.88 -1.4 714,732 + OHPLBJKB_00694 0.88 -1.7 714,732 + OHPLBJKB_00694 0.88 -1.3 714,733 - OHPLBJKB_00694 0.88 -0.6 714,733 - OHPLBJKB_00694 0.88 +0.6 714,819 - +0.7 714,822 - -1.8 714,842 - -0.9 714,842 - +0.5 714,922 + OHPLBJKB_00695 0.22 -1.3 714,923 - OHPLBJKB_00695 0.23 -1.5 714,928 + OHPLBJKB_00695 0.24 +0.2 714,929 - OHPLBJKB_00695 0.24 -0.6 714,954 + OHPLBJKB_00695 0.30 -1.6 714,983 - OHPLBJKB_00695 0.37 +0.7 714,983 - OHPLBJKB_00695 0.37 -0.1 715,020 - OHPLBJKB_00695 0.45 +0.3 715,051 + OHPLBJKB_00695 0.53 -0.9 715,087 + OHPLBJKB_00695 0.61 -2.3 715,161 - OHPLBJKB_00695 0.78 -2.0 715,186 + OHPLBJKB_00695 0.84 +0.2 715,215 + +2.2 715,216 - -1.9 715,216 - -0.0 715,250 + +0.6 715,288 + -0.0 715,363 + -0.6 715,363 + -1.4 715,472 + +1.7 715,530 + +2.0 715,530 + +0.5 715,573 + +0.7 715,573 + -1.9 715,573 + +0.4 715,573 + +0.1 715,574 - -0.0 715,574 - -0.1 715,574 - +1.0 715,597 + -0.6 715,597 + +0.5 715,598 - +0.1 715,603 + +0.3 715,603 + -1.6 715,603 + -2.8 715,603 + +0.5 715,603 + +0.8 715,603 + -0.8 715,603 + -1.3 715,604 - -0.8 715,604 - +1.0 715,604 - +2.3 715,604 - -0.3 715,604 - +0.1 715,604 - +1.9 715,604 - -0.2 715,604 - +1.3 715,605 + +0.5 715,605 + +0.8 715,605 + -1.9 715,605 + +0.5 715,605 + -1.0 715,605 + -3.4 715,605 + -0.6 715,605 + -0.6 715,605 + -2.0 715,605 + +1.0 715,605 + +1.3 715,605 + +0.1 715,606 - -2.3 715,606 - -0.5 715,606 - +3.4 715,606 - +0.4 715,606 - -0.8 715,606 - -1.5 715,606 - -0.3 715,606 - -2.6 715,606 - +2.0 715,606 - -1.5 715,674 - OHPLBJKB_00696 0.17 -0.7 715,674 - OHPLBJKB_00696 0.17 -2.5 715,733 + OHPLBJKB_00696 0.24 -0.7 715,733 + OHPLBJKB_00696 0.24 -1.3 715,734 - OHPLBJKB_00696 0.24 -2.0 715,783 + OHPLBJKB_00696 0.29 -2.5 715,783 + OHPLBJKB_00696 0.29 +0.7 715,814 - OHPLBJKB_00696 0.33 -2.2 715,821 + OHPLBJKB_00696 0.34 -2.0 715,868 + OHPLBJKB_00696 0.39 -2.2 715,868 + OHPLBJKB_00696 0.39 +2.3 715,868 + OHPLBJKB_00696 0.39 +0.8 715,868 + OHPLBJKB_00696 0.39 -0.3 715,868 + OHPLBJKB_00696 0.39 +1.2 715,868 + OHPLBJKB_00696 0.39 +0.7 715,869 - OHPLBJKB_00696 0.39 -0.9 715,869 - OHPLBJKB_00696 0.39 -3.3 715,869 - OHPLBJKB_00696 0.39 +0.7 715,869 - OHPLBJKB_00696 0.39 +0.5 715,869 - OHPLBJKB_00696 0.39 +1.4 716,015 + OHPLBJKB_00696 0.55 +2.3 716,016 - OHPLBJKB_00696 0.56 -0.4 716,170 + OHPLBJKB_00696 0.73 +1.3 716,170 + OHPLBJKB_00696 0.73 -0.5 716,226 + OHPLBJKB_00696 0.79 -1.8 716,227 - OHPLBJKB_00696 0.79 -0.7
Or see this region's nucleotide sequence