Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00504

Experiment: hib MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00503 and OHPLBJKB_00504 are separated by 13 nucleotidesOHPLBJKB_00504 and OHPLBJKB_00505 are separated by 209 nucleotides OHPLBJKB_00503: OHPLBJKB_00503 - Arabinose 5-phosphate isomerase KdsD, at 517,722 to 518,708 _00503 OHPLBJKB_00504: OHPLBJKB_00504 - Inner membrane protein YrbG, at 518,722 to 519,699 _00504 OHPLBJKB_00505: OHPLBJKB_00505 - putative phospholipid import ATP-binding protein MlaF, at 519,909 to 520,718 _00505 Position (kb) 518 519 520Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 517.729 kb on - strandat 517.755 kb on - strandat 517.755 kb on - strandat 517.755 kb on - strandat 517.755 kb on - strandat 517.755 kb on - strandat 517.755 kb on - strandat 517.755 kb on - strandat 517.755 kb on - strandat 517.755 kb on - strandat 517.755 kb on - strandat 517.755 kb on - strandat 517.755 kb on - strandat 517.755 kb on - strandat 517.755 kb on - strandat 517.759 kb on - strandat 517.759 kb on - strandat 517.822 kb on - strand, within OHPLBJKB_00503at 517.864 kb on - strand, within OHPLBJKB_00503at 517.893 kb on - strand, within OHPLBJKB_00503at 517.897 kb on - strand, within OHPLBJKB_00503at 517.897 kb on - strand, within OHPLBJKB_00503at 517.897 kb on - strand, within OHPLBJKB_00503at 517.897 kb on - strand, within OHPLBJKB_00503at 517.897 kb on - strand, within OHPLBJKB_00503at 517.936 kb on - strand, within OHPLBJKB_00503at 517.971 kb on - strand, within OHPLBJKB_00503at 517.971 kb on - strand, within OHPLBJKB_00503at 517.971 kb on - strand, within OHPLBJKB_00503at 517.971 kb on - strand, within OHPLBJKB_00503at 517.971 kb on - strand, within OHPLBJKB_00503at 517.971 kb on - strand, within OHPLBJKB_00503at 517.971 kb on - strand, within OHPLBJKB_00503at 518.052 kb on - strand, within OHPLBJKB_00503at 518.076 kb on - strand, within OHPLBJKB_00503at 518.082 kb on - strand, within OHPLBJKB_00503at 518.082 kb on - strand, within OHPLBJKB_00503at 518.082 kb on - strand, within OHPLBJKB_00503at 518.157 kb on - strand, within OHPLBJKB_00503at 518.173 kb on - strand, within OHPLBJKB_00503at 518.331 kb on + strand, within OHPLBJKB_00503at 518.351 kb on + strand, within OHPLBJKB_00503at 518.352 kb on - strand, within OHPLBJKB_00503at 518.352 kb on - strand, within OHPLBJKB_00503at 518.365 kb on - strand, within OHPLBJKB_00503at 518.397 kb on - strand, within OHPLBJKB_00503at 518.403 kb on - strand, within OHPLBJKB_00503at 518.522 kb on + strand, within OHPLBJKB_00503at 518.522 kb on + strand, within OHPLBJKB_00503at 518.611 kb on + strandat 518.612 kb on - strandat 518.612 kb on - strandat 518.612 kb on - strandat 518.612 kb on - strandat 518.612 kb on - strandat 518.612 kb on - strandat 518.612 kb on - strandat 518.691 kb on + strandat 518.691 kb on + strandat 518.691 kb on + strandat 518.691 kb on + strandat 518.692 kb on - strandat 518.692 kb on - strandat 518.697 kb on + strandat 518.697 kb on + strandat 518.697 kb on + strandat 518.698 kb on - strandat 518.698 kb on - strandat 518.698 kb on - strandat 518.708 kb on + strandat 518.709 kb on - strandat 518.734 kb on + strandat 518.734 kb on + strandat 518.734 kb on + strandat 518.750 kb on + strandat 518.750 kb on + strandat 518.751 kb on - strandat 518.767 kb on + strandat 518.772 kb on + strandat 518.772 kb on + strandat 518.785 kb on + strandat 518.785 kb on + strandat 518.788 kb on + strandat 518.788 kb on + strandat 518.789 kb on - strandat 518.789 kb on - strandat 518.789 kb on - strandat 518.789 kb on - strandat 518.789 kb on - strandat 518.792 kb on - strandat 518.797 kb on + strandat 518.798 kb on - strandat 518.873 kb on + strand, within OHPLBJKB_00504at 518.885 kb on + strand, within OHPLBJKB_00504at 518.886 kb on - strand, within OHPLBJKB_00504at 518.926 kb on + strand, within OHPLBJKB_00504at 518.946 kb on + strand, within OHPLBJKB_00504at 518.970 kb on + strand, within OHPLBJKB_00504at 518.971 kb on - strand, within OHPLBJKB_00504at 519.014 kb on - strand, within OHPLBJKB_00504at 519.150 kb on + strand, within OHPLBJKB_00504at 519.151 kb on - strand, within OHPLBJKB_00504at 519.151 kb on - strand, within OHPLBJKB_00504at 519.286 kb on + strand, within OHPLBJKB_00504at 519.287 kb on - strand, within OHPLBJKB_00504at 519.328 kb on - strand, within OHPLBJKB_00504at 519.328 kb on - strand, within OHPLBJKB_00504at 519.328 kb on - strand, within OHPLBJKB_00504at 519.341 kb on + strand, within OHPLBJKB_00504at 519.341 kb on + strand, within OHPLBJKB_00504at 519.341 kb on + strand, within OHPLBJKB_00504at 519.342 kb on - strand, within OHPLBJKB_00504at 519.347 kb on - strand, within OHPLBJKB_00504at 519.379 kb on + strand, within OHPLBJKB_00504at 519.380 kb on - strand, within OHPLBJKB_00504at 519.380 kb on - strand, within OHPLBJKB_00504at 519.380 kb on - strand, within OHPLBJKB_00504at 519.380 kb on - strand, within OHPLBJKB_00504at 519.385 kb on + strand, within OHPLBJKB_00504at 519.386 kb on - strand, within OHPLBJKB_00504at 519.386 kb on - strand, within OHPLBJKB_00504at 519.386 kb on - strand, within OHPLBJKB_00504at 519.397 kb on + strand, within OHPLBJKB_00504at 519.397 kb on + strand, within OHPLBJKB_00504at 519.397 kb on + strand, within OHPLBJKB_00504at 519.398 kb on - strand, within OHPLBJKB_00504at 519.398 kb on - strand, within OHPLBJKB_00504at 519.417 kb on + strand, within OHPLBJKB_00504at 519.417 kb on + strand, within OHPLBJKB_00504at 519.457 kb on + strand, within OHPLBJKB_00504at 519.457 kb on + strand, within OHPLBJKB_00504at 519.457 kb on + strand, within OHPLBJKB_00504at 519.458 kb on - strand, within OHPLBJKB_00504at 519.458 kb on - strand, within OHPLBJKB_00504at 519.459 kb on + strand, within OHPLBJKB_00504at 519.459 kb on + strand, within OHPLBJKB_00504at 519.459 kb on + strand, within OHPLBJKB_00504at 519.459 kb on + strand, within OHPLBJKB_00504at 519.459 kb on + strand, within OHPLBJKB_00504at 519.460 kb on - strand, within OHPLBJKB_00504at 519.460 kb on - strand, within OHPLBJKB_00504at 519.555 kb on + strand, within OHPLBJKB_00504at 519.555 kb on + strand, within OHPLBJKB_00504at 519.555 kb on + strand, within OHPLBJKB_00504at 519.555 kb on + strand, within OHPLBJKB_00504at 519.555 kb on + strand, within OHPLBJKB_00504at 519.555 kb on + strand, within OHPLBJKB_00504at 519.556 kb on - strand, within OHPLBJKB_00504at 519.561 kb on + strand, within OHPLBJKB_00504at 519.618 kb on + strandat 519.619 kb on - strandat 519.619 kb on - strandat 519.650 kb on + strandat 519.650 kb on + strandat 519.650 kb on + strandat 519.651 kb on - strandat 519.651 kb on - strandat 519.664 kb on + strandat 519.676 kb on + strandat 519.677 kb on - strandat 519.688 kb on - strandat 519.692 kb on - strandat 519.692 kb on - strandat 519.692 kb on - strandat 519.701 kb on + strandat 519.701 kb on + strandat 519.701 kb on + strandat 519.701 kb on + strandat 519.701 kb on + strandat 519.702 kb on - strandat 519.702 kb on - strandat 519.719 kb on + strandat 519.719 kb on + strandat 519.719 kb on + strandat 519.720 kb on - strandat 519.722 kb on - strandat 519.832 kb on + strandat 519.832 kb on + strandat 519.833 kb on - strandat 519.839 kb on + strandat 519.840 kb on - strandat 519.843 kb on + strandat 519.844 kb on - strandat 519.844 kb on - strandat 519.860 kb on + strandat 519.860 kb on + strandat 519.908 kb on + strandat 519.909 kb on - strandat 519.956 kb on + strandat 519.986 kb on + strandat 519.986 kb on + strandat 519.987 kb on - strandat 519.987 kb on - strandat 519.987 kb on - strandat 520.057 kb on + strand, within OHPLBJKB_00505at 520.122 kb on - strand, within OHPLBJKB_00505at 520.149 kb on + strand, within OHPLBJKB_00505at 520.149 kb on + strand, within OHPLBJKB_00505at 520.149 kb on + strand, within OHPLBJKB_00505at 520.150 kb on - strand, within OHPLBJKB_00505at 520.151 kb on + strand, within OHPLBJKB_00505at 520.151 kb on + strand, within OHPLBJKB_00505at 520.151 kb on + strand, within OHPLBJKB_00505at 520.151 kb on + strand, within OHPLBJKB_00505at 520.151 kb on + strand, within OHPLBJKB_00505at 520.151 kb on + strand, within OHPLBJKB_00505at 520.151 kb on + strand, within OHPLBJKB_00505at 520.152 kb on - strand, within OHPLBJKB_00505at 520.152 kb on - strand, within OHPLBJKB_00505at 520.152 kb on - strand, within OHPLBJKB_00505at 520.152 kb on - strand, within OHPLBJKB_00505at 520.152 kb on - strand, within OHPLBJKB_00505at 520.177 kb on + strand, within OHPLBJKB_00505at 520.178 kb on - strand, within OHPLBJKB_00505at 520.206 kb on - strand, within OHPLBJKB_00505at 520.206 kb on - strand, within OHPLBJKB_00505at 520.213 kb on + strand, within OHPLBJKB_00505at 520.213 kb on + strand, within OHPLBJKB_00505at 520.213 kb on + strand, within OHPLBJKB_00505at 520.214 kb on - strand, within OHPLBJKB_00505at 520.214 kb on - strand, within OHPLBJKB_00505at 520.214 kb on - strand, within OHPLBJKB_00505at 520.214 kb on - strand, within OHPLBJKB_00505at 520.247 kb on + strand, within OHPLBJKB_00505at 520.248 kb on - strand, within OHPLBJKB_00505at 520.248 kb on - strand, within OHPLBJKB_00505at 520.274 kb on + strand, within OHPLBJKB_00505at 520.274 kb on + strand, within OHPLBJKB_00505at 520.274 kb on + strand, within OHPLBJKB_00505at 520.274 kb on + strand, within OHPLBJKB_00505at 520.274 kb on + strand, within OHPLBJKB_00505at 520.274 kb on + strand, within OHPLBJKB_00505at 520.275 kb on - strand, within OHPLBJKB_00505at 520.275 kb on - strand, within OHPLBJKB_00505at 520.275 kb on - strand, within OHPLBJKB_00505at 520.275 kb on - strand, within OHPLBJKB_00505at 520.277 kb on + strand, within OHPLBJKB_00505at 520.278 kb on - strand, within OHPLBJKB_00505at 520.278 kb on - strand, within OHPLBJKB_00505at 520.327 kb on + strand, within OHPLBJKB_00505at 520.328 kb on - strand, within OHPLBJKB_00505at 520.535 kb on - strand, within OHPLBJKB_00505at 520.538 kb on + strand, within OHPLBJKB_00505at 520.539 kb on - strand, within OHPLBJKB_00505at 520.539 kb on - strand, within OHPLBJKB_00505at 520.627 kb on + strand, within OHPLBJKB_00505at 520.628 kb on - strand, within OHPLBJKB_00505at 520.628 kb on - strand, within OHPLBJKB_00505at 520.648 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction hib MOI1
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517,729 - +0.2
517,755 - +0.2
517,755 - -2.4
517,755 - -2.3
517,755 - +0.3
517,755 - -0.8
517,755 - +1.0
517,755 - -1.0
517,755 - -1.0
517,755 - -0.2
517,755 - +0.3
517,755 - -0.7
517,755 - -0.0
517,755 - +0.3
517,755 - +0.7
517,759 - +0.1
517,759 - -0.3
517,822 - OHPLBJKB_00503 0.10 +0.8
517,864 - OHPLBJKB_00503 0.14 -1.0
517,893 - OHPLBJKB_00503 0.17 -0.6
517,897 - OHPLBJKB_00503 0.18 -2.8
517,897 - OHPLBJKB_00503 0.18 +0.2
517,897 - OHPLBJKB_00503 0.18 +0.4
517,897 - OHPLBJKB_00503 0.18 +1.8
517,897 - OHPLBJKB_00503 0.18 -0.7
517,936 - OHPLBJKB_00503 0.22 +0.5
517,971 - OHPLBJKB_00503 0.25 -0.9
517,971 - OHPLBJKB_00503 0.25 -0.0
517,971 - OHPLBJKB_00503 0.25 -1.6
517,971 - OHPLBJKB_00503 0.25 +0.4
517,971 - OHPLBJKB_00503 0.25 +0.9
517,971 - OHPLBJKB_00503 0.25 +2.9
517,971 - OHPLBJKB_00503 0.25 +0.3
518,052 - OHPLBJKB_00503 0.33 +1.5
518,076 - OHPLBJKB_00503 0.36 +2.3
518,082 - OHPLBJKB_00503 0.36 +1.1
518,082 - OHPLBJKB_00503 0.36 -0.4
518,082 - OHPLBJKB_00503 0.36 -0.2
518,157 - OHPLBJKB_00503 0.44 +0.8
518,173 - OHPLBJKB_00503 0.46 +0.6
518,331 + OHPLBJKB_00503 0.62 -0.4
518,351 + OHPLBJKB_00503 0.64 +0.6
518,352 - OHPLBJKB_00503 0.64 -0.5
518,352 - OHPLBJKB_00503 0.64 +0.9
518,365 - OHPLBJKB_00503 0.65 -0.2
518,397 - OHPLBJKB_00503 0.68 +1.6
518,403 - OHPLBJKB_00503 0.69 +0.6
518,522 + OHPLBJKB_00503 0.81 -0.2
518,522 + OHPLBJKB_00503 0.81 -1.4
518,611 + -1.0
518,612 - +1.0
518,612 - +1.0
518,612 - +1.4
518,612 - -1.9
518,612 - -1.1
518,612 - +1.8
518,612 - +0.1
518,691 + -2.3
518,691 + -0.6
518,691 + -1.5
518,691 + -1.2
518,692 - +1.0
518,692 - -1.6
518,697 + -1.2
518,697 + -0.4
518,697 + -0.0
518,698 - -1.7
518,698 - -1.1
518,698 - +0.8
518,708 + +1.4
518,709 - +1.5
518,734 + -0.2
518,734 + +2.0
518,734 + -0.4
518,750 + +2.4
518,750 + +0.5
518,751 - -0.4
518,767 + -1.1
518,772 + -0.3
518,772 + -1.5
518,785 + -0.0
518,785 + +1.5
518,788 + -0.9
518,788 + -1.9
518,789 - -0.3
518,789 - -1.3
518,789 - -2.3
518,789 - -2.2
518,789 - +0.6
518,792 - -0.9
518,797 + +0.4
518,798 - +0.4
518,873 + OHPLBJKB_00504 0.15 +0.1
518,885 + OHPLBJKB_00504 0.17 -2.0
518,886 - OHPLBJKB_00504 0.17 -1.1
518,926 + OHPLBJKB_00504 0.21 -2.1
518,946 + OHPLBJKB_00504 0.23 -1.9
518,970 + OHPLBJKB_00504 0.25 -0.5
518,971 - OHPLBJKB_00504 0.25 -1.1
519,014 - OHPLBJKB_00504 0.30 +1.9
519,150 + OHPLBJKB_00504 0.44 -2.3
519,151 - OHPLBJKB_00504 0.44 -0.1
519,151 - OHPLBJKB_00504 0.44 -0.6
519,286 + OHPLBJKB_00504 0.58 -1.7
519,287 - OHPLBJKB_00504 0.58 +0.9
519,328 - OHPLBJKB_00504 0.62 +1.6
519,328 - OHPLBJKB_00504 0.62 +0.6
519,328 - OHPLBJKB_00504 0.62 -2.2
519,341 + OHPLBJKB_00504 0.63 -0.6
519,341 + OHPLBJKB_00504 0.63 -2.1
519,341 + OHPLBJKB_00504 0.63 -0.1
519,342 - OHPLBJKB_00504 0.63 -0.2
519,347 - OHPLBJKB_00504 0.64 -0.9
519,379 + OHPLBJKB_00504 0.67 -0.2
519,380 - OHPLBJKB_00504 0.67 -0.5
519,380 - OHPLBJKB_00504 0.67 +0.2
519,380 - OHPLBJKB_00504 0.67 +1.5
519,380 - OHPLBJKB_00504 0.67 -0.7
519,385 + OHPLBJKB_00504 0.68 +0.1
519,386 - OHPLBJKB_00504 0.68 -0.5
519,386 - OHPLBJKB_00504 0.68 -0.6
519,386 - OHPLBJKB_00504 0.68 +0.5
519,397 + OHPLBJKB_00504 0.69 -1.9
519,397 + OHPLBJKB_00504 0.69 +0.7
519,397 + OHPLBJKB_00504 0.69 +0.8
519,398 - OHPLBJKB_00504 0.69 +1.6
519,398 - OHPLBJKB_00504 0.69 +2.0
519,417 + OHPLBJKB_00504 0.71 -0.8
519,417 + OHPLBJKB_00504 0.71 -0.7
519,457 + OHPLBJKB_00504 0.75 +0.5
519,457 + OHPLBJKB_00504 0.75 +0.4
519,457 + OHPLBJKB_00504 0.75 +1.1
519,458 - OHPLBJKB_00504 0.75 -0.5
519,458 - OHPLBJKB_00504 0.75 -0.7
519,459 + OHPLBJKB_00504 0.75 +0.1
519,459 + OHPLBJKB_00504 0.75 +0.6
519,459 + OHPLBJKB_00504 0.75 -1.0
519,459 + OHPLBJKB_00504 0.75 -2.0
519,459 + OHPLBJKB_00504 0.75 -0.4
519,460 - OHPLBJKB_00504 0.75 +0.4
519,460 - OHPLBJKB_00504 0.75 +0.1
519,555 + OHPLBJKB_00504 0.85 -1.1
519,555 + OHPLBJKB_00504 0.85 -1.2
519,555 + OHPLBJKB_00504 0.85 -1.2
519,555 + OHPLBJKB_00504 0.85 -0.5
519,555 + OHPLBJKB_00504 0.85 -2.5
519,555 + OHPLBJKB_00504 0.85 -1.6
519,556 - OHPLBJKB_00504 0.85 +1.1
519,561 + OHPLBJKB_00504 0.86 -0.9
519,618 + -2.5
519,619 - -1.8
519,619 - -0.3
519,650 + -1.1
519,650 + -1.4
519,650 + -1.5
519,651 - -0.4
519,651 - -1.4
519,664 + -1.2
519,676 + -1.9
519,677 - +1.6
519,688 - -1.5
519,692 - +0.1
519,692 - +0.4
519,692 - +0.3
519,701 + -0.7
519,701 + +2.2
519,701 + -0.6
519,701 + +0.2
519,701 + +0.2
519,702 - +0.1
519,702 - -1.3
519,719 + -2.1
519,719 + -2.1
519,719 + -0.3
519,720 - -0.2
519,722 - +1.2
519,832 + -2.8
519,832 + -1.3
519,833 - -1.6
519,839 + -1.3
519,840 - -2.5
519,843 + +1.5
519,844 - +0.3
519,844 - -0.7
519,860 + -0.7
519,860 + -1.7
519,908 + -0.4
519,909 - +0.2
519,956 + +0.1
519,986 + +1.4
519,986 + -0.4
519,987 - -0.0
519,987 - -1.5
519,987 - +1.1
520,057 + OHPLBJKB_00505 0.18 -0.9
520,122 - OHPLBJKB_00505 0.26 -1.4
520,149 + OHPLBJKB_00505 0.30 +1.9
520,149 + OHPLBJKB_00505 0.30 -0.4
520,149 + OHPLBJKB_00505 0.30 -0.2
520,150 - OHPLBJKB_00505 0.30 +0.4
520,151 + OHPLBJKB_00505 0.30 -1.1
520,151 + OHPLBJKB_00505 0.30 -1.2
520,151 + OHPLBJKB_00505 0.30 +1.8
520,151 + OHPLBJKB_00505 0.30 -1.8
520,151 + OHPLBJKB_00505 0.30 -0.9
520,151 + OHPLBJKB_00505 0.30 +1.1
520,151 + OHPLBJKB_00505 0.30 -2.1
520,152 - OHPLBJKB_00505 0.30 -1.3
520,152 - OHPLBJKB_00505 0.30 -0.0
520,152 - OHPLBJKB_00505 0.30 +0.3
520,152 - OHPLBJKB_00505 0.30 -0.5
520,152 - OHPLBJKB_00505 0.30 +0.6
520,177 + OHPLBJKB_00505 0.33 -2.0
520,178 - OHPLBJKB_00505 0.33 -1.7
520,206 - OHPLBJKB_00505 0.37 -0.1
520,206 - OHPLBJKB_00505 0.37 +0.2
520,213 + OHPLBJKB_00505 0.38 +0.2
520,213 + OHPLBJKB_00505 0.38 +0.1
520,213 + OHPLBJKB_00505 0.38 +2.8
520,214 - OHPLBJKB_00505 0.38 -0.7
520,214 - OHPLBJKB_00505 0.38 -1.6
520,214 - OHPLBJKB_00505 0.38 -1.1
520,214 - OHPLBJKB_00505 0.38 -0.6
520,247 + OHPLBJKB_00505 0.42 +1.6
520,248 - OHPLBJKB_00505 0.42 +0.4
520,248 - OHPLBJKB_00505 0.42 -2.5
520,274 + OHPLBJKB_00505 0.45 -0.0
520,274 + OHPLBJKB_00505 0.45 -3.1
520,274 + OHPLBJKB_00505 0.45 -0.0
520,274 + OHPLBJKB_00505 0.45 +1.0
520,274 + OHPLBJKB_00505 0.45 -2.1
520,274 + OHPLBJKB_00505 0.45 -3.3
520,275 - OHPLBJKB_00505 0.45 +0.9
520,275 - OHPLBJKB_00505 0.45 +0.8
520,275 - OHPLBJKB_00505 0.45 -1.7
520,275 - OHPLBJKB_00505 0.45 +0.9
520,277 + OHPLBJKB_00505 0.45 +0.1
520,278 - OHPLBJKB_00505 0.46 -1.9
520,278 - OHPLBJKB_00505 0.46 -0.4
520,327 + OHPLBJKB_00505 0.52 +0.1
520,328 - OHPLBJKB_00505 0.52 +0.2
520,535 - OHPLBJKB_00505 0.77 -0.6
520,538 + OHPLBJKB_00505 0.78 -2.3
520,539 - OHPLBJKB_00505 0.78 -2.8
520,539 - OHPLBJKB_00505 0.78 -0.6
520,627 + OHPLBJKB_00505 0.89 +1.4
520,628 - OHPLBJKB_00505 0.89 -2.4
520,628 - OHPLBJKB_00505 0.89 -1.9
520,648 + -0.7

Or see this region's nucleotide sequence