Experiment: hib MOI1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00183 and OHPLBJKB_00184 are separated by 404 nucleotides OHPLBJKB_00184 and OHPLBJKB_00185 are separated by 210 nucleotides
OHPLBJKB_00183: OHPLBJKB_00183 - Cytoplasmic trehalase, at 198,348 to 199,997
_00183
OHPLBJKB_00184: OHPLBJKB_00184 - hypothetical protein, at 200,402 to 201,799
_00184
OHPLBJKB_00185: OHPLBJKB_00185 - Glutamate decarboxylase alpha, at 202,010 to 203,410
_00185
Position (kb) 200
201
202 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 199.465 kb on + strand, within OHPLBJKB_00183 at 199.465 kb on + strand, within OHPLBJKB_00183 at 199.466 kb on - strand, within OHPLBJKB_00183 at 199.466 kb on - strand, within OHPLBJKB_00183 at 199.480 kb on + strand, within OHPLBJKB_00183 at 199.480 kb on + strand, within OHPLBJKB_00183 at 199.480 kb on + strand, within OHPLBJKB_00183 at 199.481 kb on - strand, within OHPLBJKB_00183 at 199.481 kb on - strand, within OHPLBJKB_00183 at 199.481 kb on - strand, within OHPLBJKB_00183 at 199.481 kb on - strand, within OHPLBJKB_00183 at 199.490 kb on + strand, within OHPLBJKB_00183 at 199.511 kb on + strand, within OHPLBJKB_00183 at 199.511 kb on + strand, within OHPLBJKB_00183 at 199.511 kb on + strand, within OHPLBJKB_00183 at 199.511 kb on + strand, within OHPLBJKB_00183 at 199.511 kb on + strand, within OHPLBJKB_00183 at 199.511 kb on + strand, within OHPLBJKB_00183 at 199.511 kb on + strand, within OHPLBJKB_00183 at 199.511 kb on + strand, within OHPLBJKB_00183 at 199.511 kb on + strand, within OHPLBJKB_00183 at 199.511 kb on + strand, within OHPLBJKB_00183 at 199.511 kb on + strand, within OHPLBJKB_00183 at 199.511 kb on + strand, within OHPLBJKB_00183 at 199.511 kb on + strand, within OHPLBJKB_00183 at 199.512 kb on - strand, within OHPLBJKB_00183 at 199.512 kb on - strand, within OHPLBJKB_00183 at 199.512 kb on - strand, within OHPLBJKB_00183 at 199.512 kb on - strand, within OHPLBJKB_00183 at 199.512 kb on - strand, within OHPLBJKB_00183 at 199.512 kb on - strand, within OHPLBJKB_00183 at 199.512 kb on - strand, within OHPLBJKB_00183 at 199.512 kb on - strand, within OHPLBJKB_00183 at 199.512 kb on - strand, within OHPLBJKB_00183 at 199.513 kb on + strand, within OHPLBJKB_00183 at 199.513 kb on + strand, within OHPLBJKB_00183 at 199.513 kb on + strand, within OHPLBJKB_00183 at 199.513 kb on + strand, within OHPLBJKB_00183 at 199.513 kb on + strand, within OHPLBJKB_00183 at 199.513 kb on + strand, within OHPLBJKB_00183 at 199.513 kb on + strand, within OHPLBJKB_00183 at 199.513 kb on + strand, within OHPLBJKB_00183 at 199.514 kb on - strand, within OHPLBJKB_00183 at 199.514 kb on - strand, within OHPLBJKB_00183 at 199.514 kb on - strand, within OHPLBJKB_00183 at 199.514 kb on - strand, within OHPLBJKB_00183 at 199.514 kb on - strand, within OHPLBJKB_00183 at 199.514 kb on - strand, within OHPLBJKB_00183 at 199.514 kb on - strand, within OHPLBJKB_00183 at 199.514 kb on - strand, within OHPLBJKB_00183 at 199.514 kb on - strand, within OHPLBJKB_00183 at 199.514 kb on - strand, within OHPLBJKB_00183 at 199.514 kb on - strand, within OHPLBJKB_00183 at 199.514 kb on - strand, within OHPLBJKB_00183 at 199.626 kb on + strand, within OHPLBJKB_00183 at 199.627 kb on - strand, within OHPLBJKB_00183 at 199.630 kb on + strand, within OHPLBJKB_00183 at 199.631 kb on - strand, within OHPLBJKB_00183 at 199.713 kb on - strand, within OHPLBJKB_00183 at 199.725 kb on + strand, within OHPLBJKB_00183 at 199.772 kb on + strand, within OHPLBJKB_00183 at 199.773 kb on - strand, within OHPLBJKB_00183 at 199.773 kb on - strand, within OHPLBJKB_00183 at 199.912 kb on - strand at 199.912 kb on - strand at 199.918 kb on + strand at 199.933 kb on + strand at 199.934 kb on - strand at 199.971 kb on - strand at 199.997 kb on + strand at 200.025 kb on + strand at 200.045 kb on - strand at 200.128 kb on + strand at 200.128 kb on + strand at 200.128 kb on + strand at 200.132 kb on - strand at 200.317 kb on - strand at 200.377 kb on - strand at 200.377 kb on - strand at 200.420 kb on - strand at 200.420 kb on - strand at 200.420 kb on - strand at 200.420 kb on - strand at 200.420 kb on - strand at 200.422 kb on + strand at 200.457 kb on - strand at 200.457 kb on - strand at 200.457 kb on - strand at 200.457 kb on - strand at 200.460 kb on + strand at 200.461 kb on - strand at 200.474 kb on + strand at 200.474 kb on + strand at 200.475 kb on - strand at 200.475 kb on - strand at 200.484 kb on - strand at 200.494 kb on + strand at 200.503 kb on + strand at 200.542 kb on + strand, within OHPLBJKB_00184 at 200.543 kb on - strand, within OHPLBJKB_00184 at 200.545 kb on + strand, within OHPLBJKB_00184 at 200.607 kb on + strand, within OHPLBJKB_00184 at 200.618 kb on + strand, within OHPLBJKB_00184 at 200.618 kb on + strand, within OHPLBJKB_00184 at 200.619 kb on - strand, within OHPLBJKB_00184 at 200.619 kb on - strand, within OHPLBJKB_00184 at 200.621 kb on + strand, within OHPLBJKB_00184 at 200.621 kb on + strand, within OHPLBJKB_00184 at 200.622 kb on - strand, within OHPLBJKB_00184 at 200.623 kb on + strand, within OHPLBJKB_00184 at 200.623 kb on + strand, within OHPLBJKB_00184 at 200.652 kb on - strand, within OHPLBJKB_00184 at 200.659 kb on + strand, within OHPLBJKB_00184 at 200.659 kb on + strand, within OHPLBJKB_00184 at 200.660 kb on - strand, within OHPLBJKB_00184 at 200.660 kb on - strand, within OHPLBJKB_00184 at 200.671 kb on + strand, within OHPLBJKB_00184 at 200.671 kb on + strand, within OHPLBJKB_00184 at 200.672 kb on - strand, within OHPLBJKB_00184 at 200.672 kb on - strand, within OHPLBJKB_00184 at 200.773 kb on + strand, within OHPLBJKB_00184 at 200.773 kb on + strand, within OHPLBJKB_00184 at 200.774 kb on - strand, within OHPLBJKB_00184 at 200.774 kb on - strand, within OHPLBJKB_00184 at 200.774 kb on - strand, within OHPLBJKB_00184 at 200.774 kb on - strand, within OHPLBJKB_00184 at 200.791 kb on + strand, within OHPLBJKB_00184 at 200.791 kb on + strand, within OHPLBJKB_00184 at 200.791 kb on + strand, within OHPLBJKB_00184 at 200.792 kb on - strand, within OHPLBJKB_00184 at 200.842 kb on - strand, within OHPLBJKB_00184 at 200.890 kb on + strand, within OHPLBJKB_00184 at 200.981 kb on + strand, within OHPLBJKB_00184 at 200.982 kb on - strand, within OHPLBJKB_00184 at 201.008 kb on - strand, within OHPLBJKB_00184 at 201.008 kb on - strand, within OHPLBJKB_00184 at 201.118 kb on - strand, within OHPLBJKB_00184 at 201.121 kb on + strand, within OHPLBJKB_00184 at 201.121 kb on + strand, within OHPLBJKB_00184 at 201.121 kb on + strand, within OHPLBJKB_00184 at 201.122 kb on - strand, within OHPLBJKB_00184 at 201.133 kb on + strand, within OHPLBJKB_00184 at 201.133 kb on + strand, within OHPLBJKB_00184 at 201.238 kb on + strand, within OHPLBJKB_00184 at 201.239 kb on - strand, within OHPLBJKB_00184 at 201.245 kb on - strand, within OHPLBJKB_00184 at 201.355 kb on + strand, within OHPLBJKB_00184 at 201.376 kb on + strand, within OHPLBJKB_00184 at 201.616 kb on + strand, within OHPLBJKB_00184 at 201.638 kb on + strand, within OHPLBJKB_00184 at 201.703 kb on - strand at 201.741 kb on + strand at 201.741 kb on + strand at 201.742 kb on - strand at 201.771 kb on - strand at 201.780 kb on - strand at 201.782 kb on - strand at 201.802 kb on - strand at 201.878 kb on - strand at 201.932 kb on + strand at 202.082 kb on - strand at 202.145 kb on - strand at 202.159 kb on - strand, within OHPLBJKB_00185 at 202.159 kb on - strand, within OHPLBJKB_00185 at 202.161 kb on - strand, within OHPLBJKB_00185
Per-strain Table
Position Strand Gene LocusTag Fraction hib MOI1 remove 199,465 + OHPLBJKB_00183 0.68 +1.0 199,465 + OHPLBJKB_00183 0.68 -2.0 199,466 - OHPLBJKB_00183 0.68 -0.9 199,466 - OHPLBJKB_00183 0.68 +1.0 199,480 + OHPLBJKB_00183 0.69 -0.2 199,480 + OHPLBJKB_00183 0.69 +1.6 199,480 + OHPLBJKB_00183 0.69 -0.5 199,481 - OHPLBJKB_00183 0.69 +0.2 199,481 - OHPLBJKB_00183 0.69 -0.4 199,481 - OHPLBJKB_00183 0.69 -0.2 199,481 - OHPLBJKB_00183 0.69 +1.0 199,490 + OHPLBJKB_00183 0.69 +0.9 199,511 + OHPLBJKB_00183 0.70 +0.6 199,511 + OHPLBJKB_00183 0.70 -2.0 199,511 + OHPLBJKB_00183 0.70 +0.6 199,511 + OHPLBJKB_00183 0.70 -0.7 199,511 + OHPLBJKB_00183 0.70 +2.3 199,511 + OHPLBJKB_00183 0.70 +0.3 199,511 + OHPLBJKB_00183 0.70 -0.6 199,511 + OHPLBJKB_00183 0.70 -0.7 199,511 + OHPLBJKB_00183 0.70 +0.3 199,511 + OHPLBJKB_00183 0.70 +0.5 199,511 + OHPLBJKB_00183 0.70 +0.4 199,511 + OHPLBJKB_00183 0.70 +1.3 199,511 + OHPLBJKB_00183 0.70 +0.8 199,512 - OHPLBJKB_00183 0.71 +0.7 199,512 - OHPLBJKB_00183 0.71 +1.0 199,512 - OHPLBJKB_00183 0.71 -3.8 199,512 - OHPLBJKB_00183 0.71 -0.8 199,512 - OHPLBJKB_00183 0.71 +0.1 199,512 - OHPLBJKB_00183 0.71 +0.4 199,512 - OHPLBJKB_00183 0.71 +0.5 199,512 - OHPLBJKB_00183 0.71 -0.9 199,512 - OHPLBJKB_00183 0.71 -2.3 199,513 + OHPLBJKB_00183 0.71 +0.9 199,513 + OHPLBJKB_00183 0.71 -0.9 199,513 + OHPLBJKB_00183 0.71 +1.4 199,513 + OHPLBJKB_00183 0.71 +0.1 199,513 + OHPLBJKB_00183 0.71 +2.1 199,513 + OHPLBJKB_00183 0.71 +0.8 199,513 + OHPLBJKB_00183 0.71 +0.9 199,513 + OHPLBJKB_00183 0.71 +1.2 199,514 - OHPLBJKB_00183 0.71 +1.6 199,514 - OHPLBJKB_00183 0.71 -1.9 199,514 - OHPLBJKB_00183 0.71 -2.2 199,514 - OHPLBJKB_00183 0.71 +0.4 199,514 - OHPLBJKB_00183 0.71 +0.6 199,514 - OHPLBJKB_00183 0.71 -2.3 199,514 - OHPLBJKB_00183 0.71 -0.7 199,514 - OHPLBJKB_00183 0.71 +1.4 199,514 - OHPLBJKB_00183 0.71 +1.6 199,514 - OHPLBJKB_00183 0.71 -0.9 199,514 - OHPLBJKB_00183 0.71 -0.6 199,514 - OHPLBJKB_00183 0.71 +2.3 199,626 + OHPLBJKB_00183 0.77 +0.0 199,627 - OHPLBJKB_00183 0.78 +0.3 199,630 + OHPLBJKB_00183 0.78 -1.1 199,631 - OHPLBJKB_00183 0.78 +0.7 199,713 - OHPLBJKB_00183 0.83 +0.1 199,725 + OHPLBJKB_00183 0.83 -0.0 199,772 + OHPLBJKB_00183 0.86 -2.9 199,773 - OHPLBJKB_00183 0.86 -1.0 199,773 - OHPLBJKB_00183 0.86 -0.1 199,912 - -1.1 199,912 - +0.7 199,918 + -1.1 199,933 + +1.2 199,934 - -1.1 199,971 - -2.5 199,997 + +1.1 200,025 + +1.1 200,045 - -0.4 200,128 + +1.3 200,128 + -2.4 200,128 + -0.1 200,132 - -1.5 200,317 - +1.4 200,377 - +0.5 200,377 - +1.5 200,420 - -0.6 200,420 - +0.9 200,420 - -1.6 200,420 - -0.2 200,420 - +0.0 200,422 + -1.0 200,457 - -0.2 200,457 - +0.6 200,457 - +0.0 200,457 - +0.1 200,460 + -0.9 200,461 - -2.3 200,474 + -1.1 200,474 + -0.5 200,475 - -2.1 200,475 - -1.8 200,484 - +1.5 200,494 + -2.7 200,503 + -3.0 200,542 + OHPLBJKB_00184 0.10 -0.7 200,543 - OHPLBJKB_00184 0.10 +0.5 200,545 + OHPLBJKB_00184 0.10 -0.1 200,607 + OHPLBJKB_00184 0.15 +1.4 200,618 + OHPLBJKB_00184 0.15 +1.1 200,618 + OHPLBJKB_00184 0.15 -2.6 200,619 - OHPLBJKB_00184 0.16 +2.0 200,619 - OHPLBJKB_00184 0.16 -1.9 200,621 + OHPLBJKB_00184 0.16 +0.3 200,621 + OHPLBJKB_00184 0.16 -1.9 200,622 - OHPLBJKB_00184 0.16 +0.8 200,623 + OHPLBJKB_00184 0.16 +1.6 200,623 + OHPLBJKB_00184 0.16 -0.1 200,652 - OHPLBJKB_00184 0.18 -0.3 200,659 + OHPLBJKB_00184 0.18 -0.1 200,659 + OHPLBJKB_00184 0.18 +1.1 200,660 - OHPLBJKB_00184 0.18 +0.1 200,660 - OHPLBJKB_00184 0.18 -1.4 200,671 + OHPLBJKB_00184 0.19 +0.3 200,671 + OHPLBJKB_00184 0.19 -1.2 200,672 - OHPLBJKB_00184 0.19 -0.3 200,672 - OHPLBJKB_00184 0.19 +0.2 200,773 + OHPLBJKB_00184 0.27 +1.8 200,773 + OHPLBJKB_00184 0.27 -1.9 200,774 - OHPLBJKB_00184 0.27 -2.0 200,774 - OHPLBJKB_00184 0.27 -0.4 200,774 - OHPLBJKB_00184 0.27 -0.7 200,774 - OHPLBJKB_00184 0.27 -0.3 200,791 + OHPLBJKB_00184 0.28 +1.3 200,791 + OHPLBJKB_00184 0.28 -0.8 200,791 + OHPLBJKB_00184 0.28 +0.6 200,792 - OHPLBJKB_00184 0.28 +1.0 200,842 - OHPLBJKB_00184 0.31 +0.4 200,890 + OHPLBJKB_00184 0.35 -0.3 200,981 + OHPLBJKB_00184 0.41 +1.3 200,982 - OHPLBJKB_00184 0.41 +1.3 201,008 - OHPLBJKB_00184 0.43 +0.9 201,008 - OHPLBJKB_00184 0.43 -0.3 201,118 - OHPLBJKB_00184 0.51 -2.5 201,121 + OHPLBJKB_00184 0.51 -0.6 201,121 + OHPLBJKB_00184 0.51 -0.7 201,121 + OHPLBJKB_00184 0.51 -1.5 201,122 - OHPLBJKB_00184 0.52 -1.2 201,133 + OHPLBJKB_00184 0.52 +0.5 201,133 + OHPLBJKB_00184 0.52 -0.1 201,238 + OHPLBJKB_00184 0.60 +0.6 201,239 - OHPLBJKB_00184 0.60 +0.0 201,245 - OHPLBJKB_00184 0.60 +0.3 201,355 + OHPLBJKB_00184 0.68 -2.2 201,376 + OHPLBJKB_00184 0.70 -0.4 201,616 + OHPLBJKB_00184 0.87 +0.6 201,638 + OHPLBJKB_00184 0.88 -0.6 201,703 - +1.4 201,741 + -2.7 201,741 + +1.4 201,742 - -1.1 201,771 - +1.1 201,780 - +0.2 201,782 - -1.2 201,802 - -1.3 201,878 - +0.6 201,932 + +0.1 202,082 - +1.2 202,145 - +0.1 202,159 - OHPLBJKB_00185 0.11 +0.2 202,159 - OHPLBJKB_00185 0.11 -0.5 202,161 - OHPLBJKB_00185 0.11 +1.8
Or see this region's nucleotide sequence