Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00162

Experiment: hib MOI1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_00160 and OHPLBJKB_00161 are separated by 91 nucleotidesOHPLBJKB_00161 and OHPLBJKB_00162 are separated by 742 nucleotidesOHPLBJKB_00162 and OHPLBJKB_00163 are separated by 307 nucleotides OHPLBJKB_00160: OHPLBJKB_00160 - 'Kdo(2)-lipid A phosphoethanolamine 7''-transferase' transl_table=11, at 171,123 to 172,814 _00160 OHPLBJKB_00161: OHPLBJKB_00161 - tRNA-Pro, at 172,906 to 172,982 _00161 OHPLBJKB_00162: OHPLBJKB_00162 - Periplasmic dipeptide transport protein, at 173,725 to 175,332 _00162 OHPLBJKB_00163: OHPLBJKB_00163 - Dipeptide transport system permease protein DppB, at 175,640 to 176,659 _00163 Position (kb) 173 174 175 176Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 172.734 kb on + strandat 172.735 kb on - strandat 172.736 kb on + strandat 172.736 kb on + strandat 172.736 kb on + strandat 172.737 kb on - strandat 172.737 kb on - strandat 172.737 kb on - strandat 172.813 kb on - strandat 172.813 kb on - strandat 172.971 kb on + strand, within OHPLBJKB_00161at 173.193 kb on + strandat 173.193 kb on + strandat 173.193 kb on + strandat 173.194 kb on - strandat 173.244 kb on + strandat 173.273 kb on + strandat 173.322 kb on + strandat 173.322 kb on + strandat 173.334 kb on + strandat 173.395 kb on + strandat 173.400 kb on - strandat 173.454 kb on + strandat 173.455 kb on - strandat 173.505 kb on + strandat 173.505 kb on + strandat 173.505 kb on + strandat 173.523 kb on - strandat 173.629 kb on - strandat 173.724 kb on - strandat 173.731 kb on - strandat 173.731 kb on - strandat 173.781 kb on + strandat 173.809 kb on - strandat 173.821 kb on + strandat 173.821 kb on + strandat 173.882 kb on - strandat 173.882 kb on - strandat 173.882 kb on - strandat 173.882 kb on - strandat 173.882 kb on - strandat 173.882 kb on - strandat 173.905 kb on + strand, within OHPLBJKB_00162at 173.905 kb on + strand, within OHPLBJKB_00162at 173.906 kb on - strand, within OHPLBJKB_00162at 173.906 kb on - strand, within OHPLBJKB_00162at 173.906 kb on - strand, within OHPLBJKB_00162at 173.995 kb on + strand, within OHPLBJKB_00162at 173.995 kb on + strand, within OHPLBJKB_00162at 173.995 kb on + strand, within OHPLBJKB_00162at 173.996 kb on - strand, within OHPLBJKB_00162at 173.996 kb on - strand, within OHPLBJKB_00162at 173.996 kb on - strand, within OHPLBJKB_00162at 173.997 kb on + strand, within OHPLBJKB_00162at 173.997 kb on + strand, within OHPLBJKB_00162at 174.123 kb on + strand, within OHPLBJKB_00162at 174.123 kb on + strand, within OHPLBJKB_00162at 174.143 kb on - strand, within OHPLBJKB_00162at 174.148 kb on + strand, within OHPLBJKB_00162at 174.148 kb on + strand, within OHPLBJKB_00162at 174.276 kb on + strand, within OHPLBJKB_00162at 174.292 kb on + strand, within OHPLBJKB_00162at 174.293 kb on - strand, within OHPLBJKB_00162at 174.368 kb on + strand, within OHPLBJKB_00162at 174.369 kb on - strand, within OHPLBJKB_00162at 174.459 kb on + strand, within OHPLBJKB_00162at 174.460 kb on - strand, within OHPLBJKB_00162at 174.460 kb on - strand, within OHPLBJKB_00162at 174.462 kb on + strand, within OHPLBJKB_00162at 174.540 kb on + strand, within OHPLBJKB_00162at 174.562 kb on - strand, within OHPLBJKB_00162at 174.613 kb on + strand, within OHPLBJKB_00162at 174.613 kb on + strand, within OHPLBJKB_00162at 174.613 kb on + strand, within OHPLBJKB_00162at 174.616 kb on - strand, within OHPLBJKB_00162at 174.668 kb on - strand, within OHPLBJKB_00162at 174.720 kb on - strand, within OHPLBJKB_00162at 174.779 kb on - strand, within OHPLBJKB_00162at 174.779 kb on - strand, within OHPLBJKB_00162at 174.784 kb on + strand, within OHPLBJKB_00162at 174.784 kb on + strand, within OHPLBJKB_00162at 174.785 kb on - strand, within OHPLBJKB_00162at 174.785 kb on - strand, within OHPLBJKB_00162at 174.785 kb on - strand, within OHPLBJKB_00162at 174.877 kb on + strand, within OHPLBJKB_00162at 174.878 kb on - strand, within OHPLBJKB_00162at 174.878 kb on - strand, within OHPLBJKB_00162at 174.878 kb on - strand, within OHPLBJKB_00162at 174.879 kb on + strand, within OHPLBJKB_00162at 174.958 kb on + strand, within OHPLBJKB_00162at 174.958 kb on + strand, within OHPLBJKB_00162at 174.958 kb on + strand, within OHPLBJKB_00162at 174.958 kb on + strand, within OHPLBJKB_00162at 174.959 kb on - strand, within OHPLBJKB_00162at 174.959 kb on - strand, within OHPLBJKB_00162at 174.959 kb on - strand, within OHPLBJKB_00162at 174.959 kb on - strand, within OHPLBJKB_00162at 174.959 kb on - strand, within OHPLBJKB_00162at 174.974 kb on - strand, within OHPLBJKB_00162at 175.167 kb on + strand, within OHPLBJKB_00162at 175.184 kb on - strandat 175.264 kb on - strandat 175.279 kb on + strandat 175.279 kb on + strandat 175.280 kb on - strandat 175.280 kb on - strandat 175.335 kb on - strandat 175.344 kb on - strandat 175.344 kb on - strandat 175.498 kb on + strandat 175.498 kb on + strandat 175.499 kb on - strandat 175.499 kb on - strandat 175.546 kb on + strandat 175.546 kb on + strandat 175.546 kb on + strandat 175.546 kb on + strandat 175.547 kb on - strandat 175.547 kb on - strandat 175.547 kb on - strandat 175.547 kb on - strandat 175.593 kb on - strandat 175.625 kb on + strandat 175.651 kb on + strandat 175.652 kb on - strandat 175.652 kb on - strandat 175.652 kb on - strandat 175.696 kb on + strandat 175.697 kb on - strandat 175.816 kb on + strand, within OHPLBJKB_00163at 175.816 kb on + strand, within OHPLBJKB_00163at 175.816 kb on + strand, within OHPLBJKB_00163at 175.817 kb on - strand, within OHPLBJKB_00163at 175.817 kb on - strand, within OHPLBJKB_00163at 175.817 kb on - strand, within OHPLBJKB_00163at 175.835 kb on + strand, within OHPLBJKB_00163at 175.836 kb on - strand, within OHPLBJKB_00163at 175.844 kb on + strand, within OHPLBJKB_00163at 175.844 kb on + strand, within OHPLBJKB_00163at 175.844 kb on + strand, within OHPLBJKB_00163at 175.845 kb on - strand, within OHPLBJKB_00163at 175.845 kb on - strand, within OHPLBJKB_00163at 175.845 kb on - strand, within OHPLBJKB_00163at 175.873 kb on - strand, within OHPLBJKB_00163at 176.071 kb on + strand, within OHPLBJKB_00163at 176.071 kb on + strand, within OHPLBJKB_00163at 176.197 kb on - strand, within OHPLBJKB_00163at 176.233 kb on + strand, within OHPLBJKB_00163at 176.279 kb on - strand, within OHPLBJKB_00163at 176.281 kb on + strand, within OHPLBJKB_00163at 176.281 kb on + strand, within OHPLBJKB_00163at 176.305 kb on + strand, within OHPLBJKB_00163

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction hib MOI1
remove
172,734 + -1.1
172,735 - +0.2
172,736 + -1.0
172,736 + +0.5
172,736 + -0.9
172,737 - +0.3
172,737 - -2.7
172,737 - -0.2
172,813 - -0.6
172,813 - -0.7
172,971 + OHPLBJKB_00161 0.84 -3.0
173,193 + +2.8
173,193 + -0.6
173,193 + -0.6
173,194 - -0.5
173,244 + -1.1
173,273 + +0.4
173,322 + -0.0
173,322 + +0.8
173,334 + -2.1
173,395 + -0.0
173,400 - -1.0
173,454 + +1.5
173,455 - -0.7
173,505 + -0.2
173,505 + +0.2
173,505 + +0.7
173,523 - -2.2
173,629 - -3.1
173,724 - -2.1
173,731 - -1.0
173,731 - -1.4
173,781 + +2.5
173,809 - +1.8
173,821 + -0.7
173,821 + -0.6
173,882 - -0.8
173,882 - +0.5
173,882 - -0.5
173,882 - -2.2
173,882 - -0.3
173,882 - +0.7
173,905 + OHPLBJKB_00162 0.11 +1.2
173,905 + OHPLBJKB_00162 0.11 +0.3
173,906 - OHPLBJKB_00162 0.11 -0.6
173,906 - OHPLBJKB_00162 0.11 -0.3
173,906 - OHPLBJKB_00162 0.11 -0.3
173,995 + OHPLBJKB_00162 0.17 +0.7
173,995 + OHPLBJKB_00162 0.17 +0.3
173,995 + OHPLBJKB_00162 0.17 +1.4
173,996 - OHPLBJKB_00162 0.17 +0.9
173,996 - OHPLBJKB_00162 0.17 +0.1
173,996 - OHPLBJKB_00162 0.17 -1.7
173,997 + OHPLBJKB_00162 0.17 +0.3
173,997 + OHPLBJKB_00162 0.17 +0.0
174,123 + OHPLBJKB_00162 0.25 -0.9
174,123 + OHPLBJKB_00162 0.25 -1.3
174,143 - OHPLBJKB_00162 0.26 +1.4
174,148 + OHPLBJKB_00162 0.26 -1.3
174,148 + OHPLBJKB_00162 0.26 +1.7
174,276 + OHPLBJKB_00162 0.34 -1.7
174,292 + OHPLBJKB_00162 0.35 +0.1
174,293 - OHPLBJKB_00162 0.35 -2.5
174,368 + OHPLBJKB_00162 0.40 +0.5
174,369 - OHPLBJKB_00162 0.40 -1.5
174,459 + OHPLBJKB_00162 0.46 +0.1
174,460 - OHPLBJKB_00162 0.46 +0.6
174,460 - OHPLBJKB_00162 0.46 +0.2
174,462 + OHPLBJKB_00162 0.46 -0.0
174,540 + OHPLBJKB_00162 0.51 -1.5
174,562 - OHPLBJKB_00162 0.52 +0.2
174,613 + OHPLBJKB_00162 0.55 +0.3
174,613 + OHPLBJKB_00162 0.55 -3.8
174,613 + OHPLBJKB_00162 0.55 +1.3
174,616 - OHPLBJKB_00162 0.55 +0.1
174,668 - OHPLBJKB_00162 0.59 +0.1
174,720 - OHPLBJKB_00162 0.62 -1.7
174,779 - OHPLBJKB_00162 0.66 -0.2
174,779 - OHPLBJKB_00162 0.66 +0.3
174,784 + OHPLBJKB_00162 0.66 -0.4
174,784 + OHPLBJKB_00162 0.66 -0.7
174,785 - OHPLBJKB_00162 0.66 -0.0
174,785 - OHPLBJKB_00162 0.66 -1.8
174,785 - OHPLBJKB_00162 0.66 -1.6
174,877 + OHPLBJKB_00162 0.72 +0.1
174,878 - OHPLBJKB_00162 0.72 -1.8
174,878 - OHPLBJKB_00162 0.72 -1.2
174,878 - OHPLBJKB_00162 0.72 -0.6
174,879 + OHPLBJKB_00162 0.72 -0.9
174,958 + OHPLBJKB_00162 0.77 -1.2
174,958 + OHPLBJKB_00162 0.77 -0.3
174,958 + OHPLBJKB_00162 0.77 -1.7
174,958 + OHPLBJKB_00162 0.77 -0.0
174,959 - OHPLBJKB_00162 0.77 +1.1
174,959 - OHPLBJKB_00162 0.77 +0.8
174,959 - OHPLBJKB_00162 0.77 +0.8
174,959 - OHPLBJKB_00162 0.77 -1.5
174,959 - OHPLBJKB_00162 0.77 +1.2
174,974 - OHPLBJKB_00162 0.78 +0.5
175,167 + OHPLBJKB_00162 0.90 -3.1
175,184 - +0.7
175,264 - -1.1
175,279 + -1.5
175,279 + +0.3
175,280 - +0.7
175,280 - -2.2
175,335 - +0.8
175,344 - +0.4
175,344 - +0.3
175,498 + -1.0
175,498 + -0.7
175,499 - +0.4
175,499 - -1.1
175,546 + -0.4
175,546 + -2.6
175,546 + +0.7
175,546 + -0.8
175,547 - -0.3
175,547 - -2.2
175,547 - +0.4
175,547 - -1.6
175,593 - +1.6
175,625 + -1.3
175,651 + -0.2
175,652 - +0.3
175,652 - -0.5
175,652 - -0.6
175,696 + -1.1
175,697 - +1.1
175,816 + OHPLBJKB_00163 0.17 -1.6
175,816 + OHPLBJKB_00163 0.17 +0.1
175,816 + OHPLBJKB_00163 0.17 -0.2
175,817 - OHPLBJKB_00163 0.17 +0.9
175,817 - OHPLBJKB_00163 0.17 +0.6
175,817 - OHPLBJKB_00163 0.17 -0.3
175,835 + OHPLBJKB_00163 0.19 +1.8
175,836 - OHPLBJKB_00163 0.19 -0.5
175,844 + OHPLBJKB_00163 0.20 +1.4
175,844 + OHPLBJKB_00163 0.20 +0.9
175,844 + OHPLBJKB_00163 0.20 -1.9
175,845 - OHPLBJKB_00163 0.20 +2.4
175,845 - OHPLBJKB_00163 0.20 +0.1
175,845 - OHPLBJKB_00163 0.20 +0.7
175,873 - OHPLBJKB_00163 0.23 -0.7
176,071 + OHPLBJKB_00163 0.42 +1.5
176,071 + OHPLBJKB_00163 0.42 +1.5
176,197 - OHPLBJKB_00163 0.55 -0.9
176,233 + OHPLBJKB_00163 0.58 -1.2
176,279 - OHPLBJKB_00163 0.63 +5.0
176,281 + OHPLBJKB_00163 0.63 -0.3
176,281 + OHPLBJKB_00163 0.63 +2.0
176,305 + OHPLBJKB_00163 0.65 +0.1

Or see this region's nucleotide sequence