Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00005

Experiment: hib MOI1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00004 and OHPLBJKB_00005 are separated by 239 nucleotidesOHPLBJKB_00005 and OHPLBJKB_00006 are separated by 114 nucleotidesOHPLBJKB_00006 and OHPLBJKB_00007 are separated by 45 nucleotides OHPLBJKB_00004: OHPLBJKB_00004 - DNA gyrase subunit B, at 3,611 to 6,025 _00004 OHPLBJKB_00005: OHPLBJKB_00005 - hypothetical protein, at 6,265 to 6,663 _00005 OHPLBJKB_00006: OHPLBJKB_00006 - Sugar phosphatase YidA, at 6,778 to 7,590 _00006 OHPLBJKB_00007: OHPLBJKB_00007 - hypothetical protein, at 7,636 to 8,292 _00007 Position (kb) 6 7Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6.023 kb on + strandat 6.024 kb on - strandat 6.064 kb on + strandat 6.152 kb on + strandat 6.152 kb on + strandat 6.152 kb on + strandat 6.153 kb on - strandat 6.153 kb on - strandat 6.153 kb on - strandat 6.154 kb on + strandat 6.155 kb on - strandat 6.206 kb on + strandat 6.207 kb on - strandat 6.207 kb on - strandat 6.207 kb on - strandat 6.207 kb on - strandat 6.222 kb on + strandat 6.261 kb on + strandat 6.261 kb on + strandat 6.262 kb on - strandat 6.319 kb on + strand, within OHPLBJKB_00005at 6.328 kb on - strand, within OHPLBJKB_00005at 6.333 kb on - strand, within OHPLBJKB_00005at 6.525 kb on + strand, within OHPLBJKB_00005at 6.525 kb on + strand, within OHPLBJKB_00005at 6.526 kb on - strand, within OHPLBJKB_00005at 6.526 kb on - strand, within OHPLBJKB_00005at 6.526 kb on - strand, within OHPLBJKB_00005at 6.759 kb on + strandat 6.759 kb on + strandat 6.760 kb on - strandat 6.760 kb on - strandat 6.764 kb on + strandat 6.764 kb on + strandat 6.765 kb on - strandat 6.765 kb on - strandat 6.935 kb on - strand, within OHPLBJKB_00006at 6.935 kb on - strand, within OHPLBJKB_00006at 6.935 kb on - strand, within OHPLBJKB_00006at 6.951 kb on + strand, within OHPLBJKB_00006at 6.971 kb on - strand, within OHPLBJKB_00006at 6.978 kb on + strand, within OHPLBJKB_00006at 6.978 kb on + strand, within OHPLBJKB_00006at 6.979 kb on - strand, within OHPLBJKB_00006at 6.979 kb on - strand, within OHPLBJKB_00006at 6.979 kb on - strand, within OHPLBJKB_00006at 6.979 kb on - strand, within OHPLBJKB_00006at 6.979 kb on - strand, within OHPLBJKB_00006at 6.979 kb on - strand, within OHPLBJKB_00006at 6.979 kb on - strand, within OHPLBJKB_00006at 6.982 kb on + strand, within OHPLBJKB_00006at 6.982 kb on + strand, within OHPLBJKB_00006at 6.982 kb on + strand, within OHPLBJKB_00006at 6.982 kb on + strand, within OHPLBJKB_00006at 6.982 kb on + strand, within OHPLBJKB_00006at 6.982 kb on + strand, within OHPLBJKB_00006at 6.983 kb on - strand, within OHPLBJKB_00006at 6.983 kb on - strand, within OHPLBJKB_00006at 6.983 kb on - strand, within OHPLBJKB_00006at 6.983 kb on - strand, within OHPLBJKB_00006at 6.983 kb on - strand, within OHPLBJKB_00006at 6.983 kb on - strand, within OHPLBJKB_00006at 6.984 kb on + strand, within OHPLBJKB_00006at 6.984 kb on + strand, within OHPLBJKB_00006at 6.999 kb on - strand, within OHPLBJKB_00006at 7.045 kb on + strand, within OHPLBJKB_00006at 7.046 kb on - strand, within OHPLBJKB_00006at 7.124 kb on - strand, within OHPLBJKB_00006at 7.124 kb on - strand, within OHPLBJKB_00006at 7.147 kb on + strand, within OHPLBJKB_00006at 7.148 kb on - strand, within OHPLBJKB_00006at 7.150 kb on + strand, within OHPLBJKB_00006at 7.150 kb on + strand, within OHPLBJKB_00006at 7.151 kb on - strand, within OHPLBJKB_00006at 7.151 kb on - strand, within OHPLBJKB_00006at 7.151 kb on - strand, within OHPLBJKB_00006at 7.151 kb on - strand, within OHPLBJKB_00006at 7.151 kb on - strand, within OHPLBJKB_00006at 7.284 kb on + strand, within OHPLBJKB_00006at 7.309 kb on + strand, within OHPLBJKB_00006at 7.309 kb on + strand, within OHPLBJKB_00006at 7.310 kb on - strand, within OHPLBJKB_00006at 7.310 kb on - strand, within OHPLBJKB_00006at 7.310 kb on - strand, within OHPLBJKB_00006at 7.310 kb on - strand, within OHPLBJKB_00006at 7.310 kb on - strand, within OHPLBJKB_00006at 7.310 kb on - strand, within OHPLBJKB_00006at 7.311 kb on + strand, within OHPLBJKB_00006at 7.311 kb on + strand, within OHPLBJKB_00006at 7.312 kb on - strand, within OHPLBJKB_00006at 7.312 kb on - strand, within OHPLBJKB_00006at 7.334 kb on - strand, within OHPLBJKB_00006at 7.334 kb on - strand, within OHPLBJKB_00006at 7.334 kb on - strand, within OHPLBJKB_00006at 7.372 kb on - strand, within OHPLBJKB_00006at 7.400 kb on + strand, within OHPLBJKB_00006at 7.401 kb on - strand, within OHPLBJKB_00006at 7.401 kb on - strand, within OHPLBJKB_00006at 7.401 kb on - strand, within OHPLBJKB_00006at 7.405 kb on - strand, within OHPLBJKB_00006at 7.408 kb on - strand, within OHPLBJKB_00006at 7.465 kb on + strand, within OHPLBJKB_00006at 7.465 kb on + strand, within OHPLBJKB_00006at 7.498 kb on - strand, within OHPLBJKB_00006at 7.576 kb on + strandat 7.576 kb on + strandat 7.576 kb on + strandat 7.577 kb on - strandat 7.588 kb on + strandat 7.589 kb on - strandat 7.612 kb on + strandat 7.612 kb on + strandat 7.612 kb on + strandat 7.613 kb on - strandat 7.613 kb on - strandat 7.613 kb on - strandat 7.613 kb on - strandat 7.654 kb on + strandat 7.654 kb on + strandat 7.654 kb on + strandat 7.654 kb on + strandat 7.654 kb on + strandat 7.654 kb on + strandat 7.654 kb on + strandat 7.654 kb on + strandat 7.654 kb on + strandat 7.654 kb on + strandat 7.654 kb on + strandat 7.655 kb on - strandat 7.655 kb on - strandat 7.655 kb on - strandat 7.655 kb on - strandat 7.655 kb on - strandat 7.655 kb on - strandat 7.655 kb on - strandat 7.655 kb on - strandat 7.655 kb on - strandat 7.655 kb on - strandat 7.655 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction hib MOI1
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6,023 + +0.5
6,024 - -1.5
6,064 + +1.8
6,152 + -0.0
6,152 + -0.8
6,152 + -0.9
6,153 - -1.7
6,153 - +0.0
6,153 - +0.0
6,154 + -0.8
6,155 - -2.4
6,206 + +0.1
6,207 - +1.0
6,207 - -0.8
6,207 - +0.2
6,207 - +1.5
6,222 + +0.3
6,261 + +1.0
6,261 + +0.5
6,262 - +0.2
6,319 + OHPLBJKB_00005 0.14 -0.8
6,328 - OHPLBJKB_00005 0.16 +0.9
6,333 - OHPLBJKB_00005 0.17 +0.4
6,525 + OHPLBJKB_00005 0.65 +0.2
6,525 + OHPLBJKB_00005 0.65 -0.8
6,526 - OHPLBJKB_00005 0.65 +0.2
6,526 - OHPLBJKB_00005 0.65 -1.0
6,526 - OHPLBJKB_00005 0.65 -1.0
6,759 + -0.2
6,759 + -0.4
6,760 - -1.0
6,760 - +1.1
6,764 + -0.5
6,764 + -0.9
6,765 - -1.4
6,765 - -1.4
6,935 - OHPLBJKB_00006 0.19 +0.1
6,935 - OHPLBJKB_00006 0.19 -0.6
6,935 - OHPLBJKB_00006 0.19 +0.9
6,951 + OHPLBJKB_00006 0.21 -1.4
6,971 - OHPLBJKB_00006 0.24 -0.2
6,978 + OHPLBJKB_00006 0.25 +0.1
6,978 + OHPLBJKB_00006 0.25 +1.5
6,979 - OHPLBJKB_00006 0.25 -0.7
6,979 - OHPLBJKB_00006 0.25 +0.3
6,979 - OHPLBJKB_00006 0.25 -1.6
6,979 - OHPLBJKB_00006 0.25 +1.6
6,979 - OHPLBJKB_00006 0.25 -0.1
6,979 - OHPLBJKB_00006 0.25 +0.2
6,979 - OHPLBJKB_00006 0.25 -1.8
6,982 + OHPLBJKB_00006 0.25 -1.5
6,982 + OHPLBJKB_00006 0.25 -1.7
6,982 + OHPLBJKB_00006 0.25 +0.9
6,982 + OHPLBJKB_00006 0.25 +0.7
6,982 + OHPLBJKB_00006 0.25 -0.1
6,982 + OHPLBJKB_00006 0.25 -0.2
6,983 - OHPLBJKB_00006 0.25 -2.2
6,983 - OHPLBJKB_00006 0.25 +0.1
6,983 - OHPLBJKB_00006 0.25 -1.1
6,983 - OHPLBJKB_00006 0.25 -0.3
6,983 - OHPLBJKB_00006 0.25 -2.7
6,983 - OHPLBJKB_00006 0.25 +0.3
6,984 + OHPLBJKB_00006 0.25 -0.3
6,984 + OHPLBJKB_00006 0.25 +1.6
6,999 - OHPLBJKB_00006 0.27 +0.1
7,045 + OHPLBJKB_00006 0.33 -0.7
7,046 - OHPLBJKB_00006 0.33 -0.2
7,124 - OHPLBJKB_00006 0.43 -0.2
7,124 - OHPLBJKB_00006 0.43 -0.3
7,147 + OHPLBJKB_00006 0.45 +0.8
7,148 - OHPLBJKB_00006 0.46 -0.5
7,150 + OHPLBJKB_00006 0.46 -0.4
7,150 + OHPLBJKB_00006 0.46 -0.4
7,151 - OHPLBJKB_00006 0.46 -0.6
7,151 - OHPLBJKB_00006 0.46 -0.4
7,151 - OHPLBJKB_00006 0.46 -0.6
7,151 - OHPLBJKB_00006 0.46 -3.0
7,151 - OHPLBJKB_00006 0.46 +1.8
7,284 + OHPLBJKB_00006 0.62 +0.0
7,309 + OHPLBJKB_00006 0.65 +1.0
7,309 + OHPLBJKB_00006 0.65 -0.6
7,310 - OHPLBJKB_00006 0.65 -0.7
7,310 - OHPLBJKB_00006 0.65 +0.3
7,310 - OHPLBJKB_00006 0.65 -1.3
7,310 - OHPLBJKB_00006 0.65 +0.8
7,310 - OHPLBJKB_00006 0.65 -1.7
7,310 - OHPLBJKB_00006 0.65 +1.2
7,311 + OHPLBJKB_00006 0.66 +2.3
7,311 + OHPLBJKB_00006 0.66 -2.2
7,312 - OHPLBJKB_00006 0.66 -0.2
7,312 - OHPLBJKB_00006 0.66 -0.9
7,334 - OHPLBJKB_00006 0.68 -0.4
7,334 - OHPLBJKB_00006 0.68 +0.3
7,334 - OHPLBJKB_00006 0.68 +1.1
7,372 - OHPLBJKB_00006 0.73 +0.9
7,400 + OHPLBJKB_00006 0.77 -0.7
7,401 - OHPLBJKB_00006 0.77 +1.7
7,401 - OHPLBJKB_00006 0.77 -1.5
7,401 - OHPLBJKB_00006 0.77 -0.1
7,405 - OHPLBJKB_00006 0.77 +1.3
7,408 - OHPLBJKB_00006 0.77 +1.1
7,465 + OHPLBJKB_00006 0.85 +2.4
7,465 + OHPLBJKB_00006 0.85 -2.1
7,498 - OHPLBJKB_00006 0.89 -0.7
7,576 + +0.3
7,576 + +0.8
7,576 + +0.0
7,577 - -1.2
7,588 + -0.2
7,589 - -1.5
7,612 + -1.3
7,612 + -1.8
7,612 + +0.6
7,613 - +0.8
7,613 - +0.1
7,613 - -1.3
7,613 - -1.7
7,654 + -0.6
7,654 + +1.0
7,654 + +1.3
7,654 + +0.1
7,654 + -1.6
7,654 + -0.5
7,654 + -3.4
7,654 + -1.3
7,654 + +1.1
7,654 + +0.3
7,654 + +1.0
7,655 - -1.3
7,655 - +1.6
7,655 - -1.9
7,655 - -1.1
7,655 - -0.6
7,655 - -2.8
7,655 - -2.6
7,655 - +0.6
7,655 - -0.2
7,655 - -0.2
7,655 - -1.9

Or see this region's nucleotide sequence