Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt narK and NIAGMN_27705 are separated by 94 nucleotides NIAGMN_27705 and narX are separated by 25 nucleotides narX and narX overlap by 8 nucleotides narX and ychO are separated by 0 nucleotides
NIAGMN_27700: narK - nitrate transporter NarK, at 5,369,096 to 5,370,487
narK
NIAGMN_27705: NIAGMN_27705 - hypothetical protein, at 5,370,582 to 5,370,800
_27705
NIAGMN_27710: narX - nitrate/nitrite two-component system sensor histidine kinase NarX, at 5,370,826 to 5,372,622
narX
NIAGMN_27715: narX - nitrate/nitrite two-component system sensor histidine kinase NarX, at 5,372,615 to 5,373,265
narX
NIAGMN_27720: ychO - inverse autotransporter invasin YchO, at 5,373,266 to 5,374,696
ychO
Position (kb) 5370
5371
5372
5373 Strain fitness (log2 ratio) -1
0
1
2 at 5370.100 kb on - strand, within narK at 5370.262 kb on + strand, within narK at 5370.263 kb on - strand, within narK at 5370.487 kb on + strand at 5370.488 kb on - strand at 5370.678 kb on - strand, within NIAGMN_27705 at 5370.731 kb on - strand, within NIAGMN_27705 at 5370.731 kb on - strand, within NIAGMN_27705 at 5370.752 kb on + strand, within NIAGMN_27705 at 5370.752 kb on + strand, within NIAGMN_27705 at 5370.823 kb on + strand at 5370.823 kb on + strand at 5370.862 kb on - strand at 5371.480 kb on - strand, within narX at 5372.117 kb on + strand, within narX at 5372.345 kb on + strand, within narX at 5372.695 kb on + strand, within narX at 5372.708 kb on - strand, within narX at 5372.798 kb on - strand, within narX at 5373.100 kb on + strand, within narX at 5373.479 kb on + strand, within ychO
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 5,370,100 - narK NIAGMN_27700 0.72 +2.6 5,370,262 + narK NIAGMN_27700 0.84 -1.3 5,370,263 - narK NIAGMN_27700 0.84 -0.3 5,370,487 + +1.6 5,370,488 - -0.4 5,370,678 - NIAGMN_27705 0.44 +0.5 5,370,731 - NIAGMN_27705 0.68 -0.4 5,370,731 - NIAGMN_27705 0.68 -0.9 5,370,752 + NIAGMN_27705 0.78 -0.4 5,370,752 + NIAGMN_27705 0.78 -0.6 5,370,823 + +0.6 5,370,823 + -0.7 5,370,862 - +0.1 5,371,480 - narX NIAGMN_27710 0.36 -1.1 5,372,117 + narX NIAGMN_27710 0.72 -1.3 5,372,345 + narX NIAGMN_27710 0.85 +0.3 5,372,695 + narX NIAGMN_27715 0.12 -1.0 5,372,708 - narX NIAGMN_27715 0.14 -0.5 5,372,798 - narX NIAGMN_27715 0.28 +0.0 5,373,100 + narX NIAGMN_27715 0.75 +0.2 5,373,479 + ychO NIAGMN_27720 0.15 -0.8
Or see this region's nucleotide sequence