Strain Fitness in Escherichia coli ECRC102 around NIAGMN_26235

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_26220 and NIAGMN_26225 are separated by 10 nucleotidesNIAGMN_26225 and NIAGMN_26230 are separated by 251 nucleotidesNIAGMN_26230 and NIAGMN_26235 are separated by 105 nucleotidesNIAGMN_26235 and NIAGMN_26240 are separated by 15 nucleotidesNIAGMN_26240 and ydaV are separated by 22 nucleotides NIAGMN_26220: NIAGMN_26220 - hypothetical protein, at 5,112,278 to 5,112,439 _26220 NIAGMN_26225: NIAGMN_26225 - hypothetical protein, at 5,112,450 to 5,112,713 _26225 NIAGMN_26230: NIAGMN_26230 - hypothetical protein, at 5,112,965 to 5,113,177 _26230 NIAGMN_26235: NIAGMN_26235 - DUF977 domain-containing protein, at 5,113,283 to 5,113,705 _26235 NIAGMN_26240: NIAGMN_26240 - DUF1627 domain-containing protein, at 5,113,721 to 5,114,482 _26240 NIAGMN_26245: ydaV - Uncharacterized protein YdaV, at 5,114,505 to 5,115,251 ydaV Position (kb) 5113 5114Strain fitness (log2 ratio) -1 0 1 2 3at 5113.537 kb on - strand, within NIAGMN_26235at 5113.578 kb on - strand, within NIAGMN_26235at 5113.738 kb on + strandat 5114.598 kb on - strand, within ydaV

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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5,113,537 - NIAGMN_26235 0.60 +0.7
5,113,578 - NIAGMN_26235 0.70 +0.4
5,113,738 + +1.3
5,114,598 - ydaV NIAGMN_26245 0.12 +2.9

Or see this region's nucleotide sequence