Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt marR and marC are separated by 211 nucleotides marC and ydeA are separated by 24 nucleotides ydeA and yneK are separated by 150 nucleotides yneK and yneK are separated by 78 nucleotides
NIAGMN_25225: marR - multiple antibiotic resistance transcriptional regulator MarR, at 4,901,936 to 4,902,370
marR
NIAGMN_25230: marC - NAAT family transporter MarC, at 4,902,582 to 4,903,247
marC
NIAGMN_25235: ydeA - L-arabinose MFS transporter, at 4,903,272 to 4,904,462
ydeA
NIAGMN_25240: yneK - putative protein YneK, at 4,904,613 to 4,904,861
yneK
NIAGMN_25245: yneK - putative protein YneK, at 4,904,940 to 4,905,728
yneK
Position (kb) 4903
4904
4905 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4902.277 kb on - strand, within marR at 4902.277 kb on - strand, within marR at 4902.965 kb on + strand, within marC at 4903.191 kb on - strand at 4903.208 kb on + strand at 4903.317 kb on - strand at 4903.364 kb on - strand at 4903.437 kb on - strand, within ydeA at 4903.500 kb on - strand, within ydeA at 4903.567 kb on - strand, within ydeA at 4903.633 kb on - strand, within ydeA at 4903.633 kb on - strand, within ydeA at 4903.772 kb on - strand, within ydeA at 4903.772 kb on - strand, within ydeA at 4903.772 kb on - strand, within ydeA at 4903.772 kb on - strand, within ydeA at 4903.851 kb on + strand, within ydeA at 4903.907 kb on + strand, within ydeA at 4904.007 kb on + strand, within ydeA at 4904.007 kb on + strand, within ydeA at 4904.011 kb on - strand, within ydeA at 4904.293 kb on + strand, within ydeA
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 4,902,277 - marR NIAGMN_25225 0.78 +0.7 4,902,277 - marR NIAGMN_25225 0.78 +2.9 4,902,965 + marC NIAGMN_25230 0.58 -0.6 4,903,191 - -1.6 4,903,208 + +1.2 4,903,317 - +0.4 4,903,364 - +3.9 4,903,437 - ydeA NIAGMN_25235 0.14 -0.1 4,903,500 - ydeA NIAGMN_25235 0.19 +1.3 4,903,567 - ydeA NIAGMN_25235 0.25 -1.4 4,903,633 - ydeA NIAGMN_25235 0.30 -1.0 4,903,633 - ydeA NIAGMN_25235 0.30 +0.2 4,903,772 - ydeA NIAGMN_25235 0.42 -1.9 4,903,772 - ydeA NIAGMN_25235 0.42 +0.4 4,903,772 - ydeA NIAGMN_25235 0.42 +1.9 4,903,772 - ydeA NIAGMN_25235 0.42 +0.5 4,903,851 + ydeA NIAGMN_25235 0.49 +0.9 4,903,907 + ydeA NIAGMN_25235 0.53 -2.2 4,904,007 + ydeA NIAGMN_25235 0.62 +1.1 4,904,007 + ydeA NIAGMN_25235 0.62 +1.7 4,904,011 - ydeA NIAGMN_25235 0.62 +1.6 4,904,293 + ydeA NIAGMN_25235 0.86 -0.6
Or see this region's nucleotide sequence