Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_24805 and ssb overlap by 4 nucleotides ssb and NIAGMN_24815 are separated by 10 nucleotides NIAGMN_24815 and NIAGMN_24820 are separated by 124 nucleotides NIAGMN_24820 and gp36 are separated by 292 nucleotides
NIAGMN_24805: NIAGMN_24805 - hypothetical protein, at 4,834,710 to 4,834,961
_24805
NIAGMN_24810: ssb - single-stranded DNA-binding protein, at 4,834,958 to 4,835,368
ssb
NIAGMN_24815: NIAGMN_24815 - PerC family transcriptional regulator, at 4,835,379 to 4,835,651
_24815
NIAGMN_24820: NIAGMN_24820 - Hypothetical bacteriophage protein, at 4,835,776 to 4,836,000
_24820
NIAGMN_24825: gp36 - phage major capsid protein, at 4,836,293 to 4,837,450
gp36
Position (kb) 4835
4836
4837 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4834.810 kb on + strand, within NIAGMN_24805 at 4834.810 kb on + strand, within NIAGMN_24805 at 4834.921 kb on + strand, within NIAGMN_24805 at 4834.921 kb on + strand, within NIAGMN_24805 at 4835.068 kb on + strand, within ssb at 4835.345 kb on + strand at 4835.383 kb on + strand at 4835.605 kb on + strand, within NIAGMN_24815 at 4835.605 kb on + strand, within NIAGMN_24815 at 4835.633 kb on + strand at 4835.633 kb on + strand at 4835.733 kb on + strand at 4835.737 kb on + strand at 4835.737 kb on + strand at 4835.741 kb on - strand at 4836.571 kb on + strand, within gp36 at 4836.598 kb on + strand, within gp36 at 4836.598 kb on + strand, within gp36 at 4836.599 kb on - strand, within gp36 at 4836.799 kb on + strand, within gp36 at 4836.815 kb on + strand, within gp36
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 4,834,810 + NIAGMN_24805 0.40 +1.5 4,834,810 + NIAGMN_24805 0.40 +2.0 4,834,921 + NIAGMN_24805 0.84 +1.4 4,834,921 + NIAGMN_24805 0.84 +2.0 4,835,068 + ssb NIAGMN_24810 0.27 +2.0 4,835,345 + +1.0 4,835,383 + +1.0 4,835,605 + NIAGMN_24815 0.83 -1.1 4,835,605 + NIAGMN_24815 0.83 +2.5 4,835,633 + -1.9 4,835,633 + +1.0 4,835,733 + -0.0 4,835,737 + +1.0 4,835,737 + +1.2 4,835,741 - +0.6 4,836,571 + gp36 NIAGMN_24825 0.24 +0.5 4,836,598 + gp36 NIAGMN_24825 0.26 -1.2 4,836,598 + gp36 NIAGMN_24825 0.26 +0.4 4,836,599 - gp36 NIAGMN_24825 0.26 +1.0 4,836,799 + gp36 NIAGMN_24825 0.44 +3.5 4,836,815 + gp36 NIAGMN_24825 0.45 +0.0
Or see this region's nucleotide sequence