Strain Fitness in Escherichia coli ECRC102 around NIAGMN_24365

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmfd and ycfT are separated by 79 nucleotidesycfT and lolC are separated by 261 nucleotides NIAGMN_24360: mfd - transcription-repair coupling factor, at 4,763,391 to 4,766,885 mfd NIAGMN_24365: ycfT - Inner membrane protein YcfT, at 4,766,965 to 4,768,038 ycfT NIAGMN_24370: lolC - lipoprotein-releasing ABC transporter permease subunit LolC, at 4,768,300 to 4,769,499 lolC Position (kb) 4766 4767 4768 4769Strain fitness (log2 ratio) -1 0 1 2at 4766.108 kb on + strand, within mfdat 4766.221 kb on - strand, within mfdat 4766.499 kb on - strand, within mfdat 4766.895 kb on - strandat 4767.082 kb on - strand, within ycfTat 4767.161 kb on - strand, within ycfTat 4767.202 kb on - strand, within ycfTat 4767.447 kb on - strand, within ycfTat 4767.571 kb on + strand, within ycfTat 4767.953 kb on + strandat 4767.994 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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4,766,108 + mfd NIAGMN_24360 0.78 -0.9
4,766,221 - mfd NIAGMN_24360 0.81 +0.5
4,766,499 - mfd NIAGMN_24360 0.89 -1.4
4,766,895 - +2.0
4,767,082 - ycfT NIAGMN_24365 0.11 -0.6
4,767,161 - ycfT NIAGMN_24365 0.18 +1.0
4,767,202 - ycfT NIAGMN_24365 0.22 +1.5
4,767,447 - ycfT NIAGMN_24365 0.45 +0.6
4,767,571 + ycfT NIAGMN_24365 0.56 +0.6
4,767,953 + -0.0
4,767,994 - -1.0

Or see this region's nucleotide sequence