Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yceI and yceJ are separated by 3 nucleotides yceJ and yceO are separated by 260 nucleotides yceO and solA are separated by 47 nucleotides solA and bssS are separated by 114 nucleotides bssS and dinI are separated by 289 nucleotides dinI and pyrC are separated by 73 nucleotides
NIAGMN_24070: yceI - YceI family protein, at 4,710,784 to 4,711,359
yceI
NIAGMN_24075: yceJ - Cytochrome b561-like protein, at 4,711,363 to 4,711,929
yceJ
NIAGMN_24080: yceO - Uncharacterized protein YceO, at 4,712,190 to 4,712,303
yceO
NIAGMN_24085: solA - N-methyl-L-tryptophan oxidase, at 4,712,351 to 4,713,469
solA
NIAGMN_24090: bssS - biofilm formation regulator BssS, at 4,713,584 to 4,713,838
bssS
NIAGMN_24095: dinI - DNA damage-inducible protein I, at 4,714,128 to 4,714,373
dinI
NIAGMN_24100: pyrC - dihydroorotase, at 4,714,447 to 4,715,493
pyrC
Position (kb) 4712
4713
4714 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4711.447 kb on - strand, within yceJ at 4711.459 kb on - strand, within yceJ at 4711.468 kb on + strand, within yceJ at 4711.468 kb on + strand, within yceJ at 4711.604 kb on + strand, within yceJ at 4711.638 kb on - strand, within yceJ at 4711.773 kb on + strand, within yceJ at 4711.809 kb on - strand, within yceJ at 4712.274 kb on - strand, within yceO at 4712.317 kb on - strand at 4712.586 kb on - strand, within solA at 4712.725 kb on - strand, within solA at 4712.727 kb on + strand, within solA at 4712.771 kb on - strand, within solA at 4712.813 kb on + strand, within solA at 4712.924 kb on + strand, within solA at 4713.310 kb on - strand, within solA at 4713.503 kb on + strand at 4713.503 kb on + strand at 4713.524 kb on - strand at 4713.648 kb on - strand, within bssS at 4713.648 kb on - strand, within bssS at 4713.648 kb on - strand, within bssS at 4713.769 kb on - strand, within bssS at 4713.769 kb on - strand, within bssS at 4713.773 kb on - strand, within bssS at 4713.798 kb on - strand, within bssS at 4713.798 kb on - strand, within bssS at 4713.860 kb on - strand at 4713.863 kb on - strand at 4713.895 kb on - strand at 4713.924 kb on + strand at 4714.127 kb on - strand at 4714.422 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 4,711,447 - yceJ NIAGMN_24075 0.15 +0.0 4,711,459 - yceJ NIAGMN_24075 0.17 +0.4 4,711,468 + yceJ NIAGMN_24075 0.19 -2.1 4,711,468 + yceJ NIAGMN_24075 0.19 +0.0 4,711,604 + yceJ NIAGMN_24075 0.43 -2.0 4,711,638 - yceJ NIAGMN_24075 0.49 -1.7 4,711,773 + yceJ NIAGMN_24075 0.72 -0.1 4,711,809 - yceJ NIAGMN_24075 0.79 +0.6 4,712,274 - yceO NIAGMN_24080 0.74 -0.8 4,712,317 - -0.1 4,712,586 - solA NIAGMN_24085 0.21 +1.4 4,712,725 - solA NIAGMN_24085 0.33 +1.0 4,712,727 + solA NIAGMN_24085 0.34 -1.0 4,712,771 - solA NIAGMN_24085 0.38 +1.4 4,712,813 + solA NIAGMN_24085 0.41 +0.9 4,712,924 + solA NIAGMN_24085 0.51 +0.2 4,713,310 - solA NIAGMN_24085 0.86 +0.1 4,713,503 + +0.4 4,713,503 + +0.2 4,713,524 - +0.4 4,713,648 - bssS NIAGMN_24090 0.25 -0.3 4,713,648 - bssS NIAGMN_24090 0.25 -1.6 4,713,648 - bssS NIAGMN_24090 0.25 +0.0 4,713,769 - bssS NIAGMN_24090 0.73 +0.4 4,713,769 - bssS NIAGMN_24090 0.73 -1.8 4,713,773 - bssS NIAGMN_24090 0.74 +2.0 4,713,798 - bssS NIAGMN_24090 0.84 -0.2 4,713,798 - bssS NIAGMN_24090 0.84 -1.8 4,713,860 - -0.3 4,713,863 - -0.8 4,713,895 - -0.3 4,713,924 + +1.3 4,714,127 - +2.0 4,714,422 + +0.1
Or see this region's nucleotide sequence