Strain Fitness in Escherichia coli ECRC102 around NIAGMN_23685

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_23675 and NIAGMN_23685 are separated by 958 nucleotidesNIAGMN_23685 and rutG are separated by 82 nucleotides NIAGMN_23675: NIAGMN_23675 - phage antirepressor Ant, at 4,627,544 to 4,628,173 _23675 NIAGMN_23685: NIAGMN_23685 - Stress-induced protein, KGG, repeat, at 4,629,132 to 4,629,239 _23685 NIAGMN_23690: rutG - pyrimidine utilization transport protein G, at 4,629,322 to 4,630,650 rutG Position (kb) 4629 4630Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 4628.215 kb on - strandat 4628.246 kb on - strandat 4628.262 kb on - strandat 4628.262 kb on - strandat 4628.282 kb on - strandat 4628.282 kb on - strandat 4628.282 kb on - strandat 4628.285 kb on - strandat 4628.316 kb on - strandat 4628.316 kb on - strandat 4628.316 kb on - strandat 4628.320 kb on - strandat 4628.338 kb on - strandat 4628.599 kb on + strandat 4628.739 kb on - strandat 4628.781 kb on - strandat 4628.812 kb on - strandat 4628.974 kb on + strandat 4629.110 kb on + strandat 4629.197 kb on + strand, within NIAGMN_23685at 4629.237 kb on + strandat 4629.476 kb on - strand, within rutGat 4629.613 kb on - strand, within rutGat 4629.732 kb on - strand, within rutGat 4629.810 kb on - strand, within rutGat 4629.810 kb on - strand, within rutGat 4630.043 kb on - strand, within rutG

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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4,628,215 - -0.5
4,628,246 - -4.8
4,628,262 - +2.1
4,628,262 - +3.3
4,628,282 - -0.5
4,628,282 - -2.6
4,628,282 - -0.3
4,628,285 - -2.9
4,628,316 - +0.2
4,628,316 - -0.8
4,628,316 - +1.0
4,628,320 - -1.0
4,628,338 - -0.5
4,628,599 + -1.1
4,628,739 - -1.8
4,628,781 - -0.5
4,628,812 - +2.0
4,628,974 + -0.8
4,629,110 + -1.1
4,629,197 + NIAGMN_23685 0.60 +0.5
4,629,237 + +1.8
4,629,476 - rutG NIAGMN_23690 0.12 -1.9
4,629,613 - rutG NIAGMN_23690 0.22 +0.7
4,629,732 - rutG NIAGMN_23690 0.31 -0.2
4,629,810 - rutG NIAGMN_23690 0.37 -0.5
4,629,810 - rutG NIAGMN_23690 0.37 -1.0
4,630,043 - rutG NIAGMN_23690 0.54 -0.6

Or see this region's nucleotide sequence