Strain Fitness in Escherichia coli ECRC102 around NIAGMN_22580

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_22570 and NIAGMN_22575 are separated by 15 nucleotidesNIAGMN_22575 and rssA are separated by 135 nucleotidesrssA and NIAGMN_22585 overlap by 4 nucleotidesNIAGMN_22585 and NIAGMN_22590 overlap by 4 nucleotides NIAGMN_22570: NIAGMN_22570 - hypothetical protein, at 4,453,205 to 4,453,615 _22570 NIAGMN_22575: NIAGMN_22575 - hypothetical protein, at 4,453,631 to 4,454,314 _22575 NIAGMN_22580: rssA - phospholipase, at 4,454,450 to 4,455,520 rssA NIAGMN_22585: NIAGMN_22585 - chemotaxis protein, at 4,455,517 to 4,456,422 _22585 NIAGMN_22590: NIAGMN_22590 - Vimentin yjdA, at 4,456,419 to 4,457,318 _22590 Position (kb) 4454 4455 4456Strain fitness (log2 ratio) -2 -1 0 1at 4453.637 kb on - strandat 4453.767 kb on + strand, within NIAGMN_22575at 4453.767 kb on + strand, within NIAGMN_22575at 4453.879 kb on + strand, within NIAGMN_22575at 4454.197 kb on - strand, within NIAGMN_22575at 4454.282 kb on - strandat 4454.373 kb on - strandat 4455.425 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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4,453,637 - +0.7
4,453,767 + NIAGMN_22575 0.20 -1.5
4,453,767 + NIAGMN_22575 0.20 -2.4
4,453,879 + NIAGMN_22575 0.36 +1.7
4,454,197 - NIAGMN_22575 0.83 +1.0
4,454,282 - +1.2
4,454,373 - -0.2
4,455,425 - +1.6

Or see this region's nucleotide sequence