Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ackA and yfbV are separated by 337 nucleotides yfbV and yfbU are separated by 82 nucleotides yfbU and hxpA are separated by 10 nucleotides hxpA and yfbS are separated by 86 nucleotides
NIAGMN_20565: ackA - acetate kinase, at 4,060,829 to 4,062,031
ackA
NIAGMN_20570: yfbV - UPF0208 membrane protein YfbV, at 4,062,369 to 4,062,824
yfbV
NIAGMN_20575: yfbU - YfbU family protein, at 4,062,907 to 4,063,401
yfbU
NIAGMN_20580: hxpA - hexitol phosphatase HxpA, at 4,063,412 to 4,064,062
hxpA
NIAGMN_20585: yfbS - Uncharacterized transporter YfbS, at 4,064,149 to 4,065,981
yfbS
Position (kb)
4062
4063
4064 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4062.042 kb on - strand at 4062.044 kb on - strand at 4062.044 kb on - strand at 4062.051 kb on - strand at 4062.110 kb on - strand at 4062.157 kb on + strand at 4062.158 kb on - strand at 4062.169 kb on - strand at 4062.169 kb on - strand at 4062.202 kb on - strand at 4062.206 kb on + strand at 4062.206 kb on + strand at 4062.206 kb on + strand at 4062.207 kb on - strand at 4062.207 kb on - strand at 4062.207 kb on - strand at 4062.207 kb on - strand at 4062.232 kb on - strand at 4062.232 kb on - strand at 4062.236 kb on - strand at 4062.236 kb on - strand at 4062.238 kb on + strand at 4062.238 kb on + strand at 4062.258 kb on + strand at 4062.258 kb on + strand at 4062.259 kb on - strand at 4062.272 kb on + strand at 4062.346 kb on + strand at 4062.346 kb on + strand at 4062.429 kb on + strand, within yfbV at 4062.430 kb on - strand, within yfbV at 4062.822 kb on + strand at 4062.837 kb on + strand at 4062.845 kb on + strand at 4062.845 kb on + strand at 4062.845 kb on + strand at 4062.845 kb on + strand at 4062.845 kb on + strand at 4062.845 kb on + strand at 4062.857 kb on + strand at 4062.882 kb on + strand at 4062.882 kb on + strand at 4062.882 kb on + strand at 4062.894 kb on - strand at 4062.894 kb on - strand at 4062.950 kb on - strand at 4062.963 kb on + strand, within yfbU at 4062.963 kb on + strand, within yfbU at 4062.963 kb on + strand, within yfbU at 4062.991 kb on + strand, within yfbU at 4063.089 kb on + strand, within yfbU at 4063.089 kb on + strand, within yfbU at 4063.111 kb on + strand, within yfbU at 4063.111 kb on + strand, within yfbU at 4063.213 kb on + strand, within yfbU at 4063.222 kb on + strand, within yfbU at 4063.222 kb on + strand, within yfbU at 4063.239 kb on + strand, within yfbU at 4063.329 kb on + strand, within yfbU at 4063.329 kb on + strand, within yfbU at 4063.329 kb on + strand, within yfbU at 4063.329 kb on + strand, within yfbU at 4063.576 kb on + strand, within hxpA at 4063.654 kb on + strand, within hxpA at 4063.699 kb on + strand, within hxpA at 4063.708 kb on + strand, within hxpA at 4063.708 kb on + strand, within hxpA at 4063.798 kb on - strand, within hxpA at 4063.841 kb on + strand, within hxpA at 4063.842 kb on - strand, within hxpA at 4063.842 kb on - strand, within hxpA at 4063.842 kb on - strand, within hxpA at 4063.969 kb on + strand, within hxpA at 4064.021 kb on - strand at 4064.050 kb on + strand at 4064.050 kb on + strand at 4064.054 kb on - strand at 4064.080 kb on + strand at 4064.134 kb on + strand at 4064.135 kb on - strand at 4064.143 kb on + strand at 4064.264 kb on + strand at 4064.313 kb on + strand at 4064.340 kb on + strand, within yfbS
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 4,062,042 - -0.1 4,062,044 - +0.9 4,062,044 - +0.9 4,062,051 - -0.2 4,062,110 - -1.0 4,062,157 + +0.3 4,062,158 - -1.2 4,062,169 - -1.2 4,062,169 - +0.3 4,062,202 - +0.3 4,062,206 + +1.9 4,062,206 + -0.7 4,062,206 + +1.2 4,062,207 - +1.4 4,062,207 - -2.2 4,062,207 - +0.9 4,062,207 - +0.5 4,062,232 - -1.4 4,062,232 - -1.2 4,062,236 - +0.4 4,062,236 - +2.3 4,062,238 + +0.3 4,062,238 + +0.9 4,062,258 + +1.3 4,062,258 + +0.9 4,062,259 - +0.3 4,062,272 + +0.8 4,062,346 + -1.1 4,062,346 + -0.8 4,062,429 + yfbV NIAGMN_20570 0.13 +0.3 4,062,430 - yfbV NIAGMN_20570 0.13 -0.4 4,062,822 + +0.4 4,062,837 + +0.6 4,062,845 + -1.1 4,062,845 + -0.4 4,062,845 + -0.9 4,062,845 + -0.4 4,062,845 + +0.8 4,062,845 + -2.1 4,062,857 + +0.9 4,062,882 + +0.3 4,062,882 + -0.8 4,062,882 + -1.1 4,062,894 - -1.8 4,062,894 - +1.2 4,062,950 - -0.4 4,062,963 + yfbU NIAGMN_20575 0.11 -0.6 4,062,963 + yfbU NIAGMN_20575 0.11 +1.9 4,062,963 + yfbU NIAGMN_20575 0.11 +1.2 4,062,991 + yfbU NIAGMN_20575 0.17 +0.9 4,063,089 + yfbU NIAGMN_20575 0.37 +0.5 4,063,089 + yfbU NIAGMN_20575 0.37 -0.3 4,063,111 + yfbU NIAGMN_20575 0.41 +0.3 4,063,111 + yfbU NIAGMN_20575 0.41 +0.3 4,063,213 + yfbU NIAGMN_20575 0.62 +2.9 4,063,222 + yfbU NIAGMN_20575 0.64 +0.3 4,063,222 + yfbU NIAGMN_20575 0.64 +2.4 4,063,239 + yfbU NIAGMN_20575 0.67 -0.1 4,063,329 + yfbU NIAGMN_20575 0.85 +0.3 4,063,329 + yfbU NIAGMN_20575 0.85 -1.2 4,063,329 + yfbU NIAGMN_20575 0.85 +0.5 4,063,329 + yfbU NIAGMN_20575 0.85 -1.3 4,063,576 + hxpA NIAGMN_20580 0.25 +0.3 4,063,654 + hxpA NIAGMN_20580 0.37 -1.4 4,063,699 + hxpA NIAGMN_20580 0.44 +0.1 4,063,708 + hxpA NIAGMN_20580 0.45 -0.4 4,063,708 + hxpA NIAGMN_20580 0.45 +2.9 4,063,798 - hxpA NIAGMN_20580 0.59 +0.6 4,063,841 + hxpA NIAGMN_20580 0.66 +1.3 4,063,842 - hxpA NIAGMN_20580 0.66 +3.3 4,063,842 - hxpA NIAGMN_20580 0.66 +0.5 4,063,842 - hxpA NIAGMN_20580 0.66 +2.9 4,063,969 + hxpA NIAGMN_20580 0.86 -0.9 4,064,021 - -1.0 4,064,050 + -0.4 4,064,050 + -0.5 4,064,054 - -1.1 4,064,080 + -0.2 4,064,134 + -1.1 4,064,135 - +1.1 4,064,143 + -1.1 4,064,264 + -1.2 4,064,313 + -0.7 4,064,340 + yfbS NIAGMN_20585 0.10 -0.8
Or see this region's nucleotide sequence