Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fimD and fimC are separated by 22 nucleotides fimC and fimA are separated by 10 nucleotides fimA and NIAGMN_20365 are separated by 38 nucleotides NIAGMN_20365 and fimA overlap by 4 nucleotides fimA and NIAGMN_20375 are separated by 1 nucleotides
NIAGMN_20350: fimD - PapC/FimD family outer membrane usher protein, at 4,020,221 to 4,022,860
fimD
NIAGMN_20355: fimC - fimbrial protein, at 4,022,883 to 4,023,641
fimC
NIAGMN_20360: fimA - fimbrial protein, at 4,023,652 to 4,024,152
fimA
NIAGMN_20365: NIAGMN_20365 - fimbrial protein, at 4,024,191 to 4,024,619
_20365
NIAGMN_20370: fimA - fimbrial protein, at 4,024,616 to 4,025,137
fimA
NIAGMN_20375: NIAGMN_20375 - DUF2544 domain-containing protein, at 4,025,139 to 4,025,981
_20375
Position (kb) 4023
4024
4025 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4022.653 kb on + strand at 4022.653 kb on + strand at 4022.654 kb on - strand at 4022.737 kb on - strand at 4022.739 kb on + strand at 4022.740 kb on - strand at 4022.789 kb on - strand at 4022.858 kb on + strand at 4022.858 kb on + strand at 4023.101 kb on + strand, within fimC at 4023.223 kb on - strand, within fimC at 4023.296 kb on + strand, within fimC at 4023.356 kb on + strand, within fimC at 4023.356 kb on + strand, within fimC at 4023.357 kb on - strand, within fimC at 4023.357 kb on - strand, within fimC at 4023.357 kb on - strand, within fimC at 4023.357 kb on - strand, within fimC at 4023.412 kb on - strand, within fimC at 4023.543 kb on + strand, within fimC at 4023.543 kb on + strand, within fimC at 4023.543 kb on + strand, within fimC at 4023.544 kb on - strand, within fimC at 4023.544 kb on - strand, within fimC at 4023.556 kb on - strand, within fimC at 4023.596 kb on + strand at 4023.639 kb on + strand at 4023.648 kb on + strand at 4023.648 kb on + strand at 4023.648 kb on + strand at 4023.649 kb on - strand at 4023.693 kb on + strand at 4023.693 kb on + strand at 4023.713 kb on + strand, within fimA at 4023.713 kb on + strand, within fimA at 4023.726 kb on + strand, within fimA at 4023.807 kb on + strand, within fimA at 4023.903 kb on - strand, within fimA at 4023.927 kb on - strand, within fimA at 4024.013 kb on + strand, within fimA at 4024.013 kb on + strand, within fimA at 4024.032 kb on - strand, within fimA at 4024.169 kb on - strand at 4024.169 kb on - strand at 4024.169 kb on - strand at 4024.222 kb on - strand at 4024.247 kb on + strand, within NIAGMN_20365 at 4024.248 kb on - strand, within NIAGMN_20365 at 4024.253 kb on + strand, within NIAGMN_20365 at 4024.266 kb on - strand, within NIAGMN_20365 at 4024.267 kb on + strand, within NIAGMN_20365 at 4024.267 kb on + strand, within NIAGMN_20365 at 4024.335 kb on + strand, within NIAGMN_20365 at 4024.337 kb on + strand, within NIAGMN_20365 at 4024.338 kb on - strand, within NIAGMN_20365 at 4024.456 kb on + strand, within NIAGMN_20365 at 4024.456 kb on + strand, within NIAGMN_20365 at 4024.493 kb on + strand, within NIAGMN_20365 at 4024.493 kb on + strand, within NIAGMN_20365 at 4024.595 kb on + strand at 4024.611 kb on + strand at 4024.657 kb on - strand at 4024.750 kb on - strand, within fimA at 4024.905 kb on + strand, within fimA at 4024.990 kb on + strand, within fimA at 4024.993 kb on + strand, within fimA at 4025.035 kb on + strand, within fimA at 4025.035 kb on + strand, within fimA
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 4,022,653 + +1.9 4,022,653 + +1.9 4,022,654 - +0.3 4,022,737 - -0.1 4,022,739 + +0.1 4,022,740 - -0.7 4,022,789 - +1.9 4,022,858 + +1.5 4,022,858 + -0.9 4,023,101 + fimC NIAGMN_20355 0.29 -1.3 4,023,223 - fimC NIAGMN_20355 0.45 -0.1 4,023,296 + fimC NIAGMN_20355 0.54 -3.3 4,023,356 + fimC NIAGMN_20355 0.62 +1.4 4,023,356 + fimC NIAGMN_20355 0.62 -2.6 4,023,357 - fimC NIAGMN_20355 0.62 -0.6 4,023,357 - fimC NIAGMN_20355 0.62 +0.1 4,023,357 - fimC NIAGMN_20355 0.62 +1.9 4,023,357 - fimC NIAGMN_20355 0.62 -1.9 4,023,412 - fimC NIAGMN_20355 0.70 -0.4 4,023,543 + fimC NIAGMN_20355 0.87 -0.1 4,023,543 + fimC NIAGMN_20355 0.87 -0.3 4,023,543 + fimC NIAGMN_20355 0.87 -1.3 4,023,544 - fimC NIAGMN_20355 0.87 -0.4 4,023,544 - fimC NIAGMN_20355 0.87 -1.1 4,023,556 - fimC NIAGMN_20355 0.89 +1.5 4,023,596 + +0.9 4,023,639 + +0.2 4,023,648 + -0.4 4,023,648 + -0.4 4,023,648 + +0.9 4,023,649 - -0.1 4,023,693 + +0.4 4,023,693 + +0.2 4,023,713 + fimA NIAGMN_20360 0.12 +0.3 4,023,713 + fimA NIAGMN_20360 0.12 +0.9 4,023,726 + fimA NIAGMN_20360 0.15 +0.9 4,023,807 + fimA NIAGMN_20360 0.31 +0.3 4,023,903 - fimA NIAGMN_20360 0.50 -0.3 4,023,927 - fimA NIAGMN_20360 0.55 +1.1 4,024,013 + fimA NIAGMN_20360 0.72 -0.3 4,024,013 + fimA NIAGMN_20360 0.72 -0.1 4,024,032 - fimA NIAGMN_20360 0.76 +0.4 4,024,169 - +0.9 4,024,169 - -0.1 4,024,169 - -0.1 4,024,222 - +1.5 4,024,247 + NIAGMN_20365 0.13 -0.6 4,024,248 - NIAGMN_20365 0.13 +0.9 4,024,253 + NIAGMN_20365 0.14 -2.0 4,024,266 - NIAGMN_20365 0.17 -0.7 4,024,267 + NIAGMN_20365 0.18 -3.0 4,024,267 + NIAGMN_20365 0.18 -1.0 4,024,335 + NIAGMN_20365 0.34 -0.4 4,024,337 + NIAGMN_20365 0.34 +0.9 4,024,338 - NIAGMN_20365 0.34 -0.9 4,024,456 + NIAGMN_20365 0.62 -0.7 4,024,456 + NIAGMN_20365 0.62 -0.4 4,024,493 + NIAGMN_20365 0.70 +1.9 4,024,493 + NIAGMN_20365 0.70 +0.3 4,024,595 + -0.1 4,024,611 + -0.9 4,024,657 - -0.1 4,024,750 - fimA NIAGMN_20370 0.26 -1.3 4,024,905 + fimA NIAGMN_20370 0.55 -0.7 4,024,990 + fimA NIAGMN_20370 0.72 -0.1 4,024,993 + fimA NIAGMN_20370 0.72 +1.2 4,025,035 + fimA NIAGMN_20370 0.80 -0.3 4,025,035 + fimA NIAGMN_20370 0.80 -0.9
Or see this region's nucleotide sequence