Strain Fitness in Escherichia coli ECRC102 around NIAGMN_19955

Experiment: RB68

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyfeK and pdxK are separated by 104 nucleotidespdxK and crr are separated by 42 nucleotidescrr and ptsI are separated by 40 nucleotides NIAGMN_19945: yfeK - Uncharacterized protein YfeK, at 3,939,606 to 3,939,938 yfeK NIAGMN_19950: pdxK - pyridoxine/pyridoxal/pyridoxamine kinase, at 3,940,043 to 3,940,894 pdxK NIAGMN_19955: crr - PTS glucose transporter subunit IIA, at 3,940,937 to 3,941,446 crr NIAGMN_19960: ptsI - phosphoenolpyruvate-protein phosphotransferase PtsI, at 3,941,487 to 3,943,214 ptsI Position (kb) 3940 3941 3942Strain fitness (log2 ratio) -2 -1 0 1 2at 3939.944 kb on + strandat 3939.950 kb on - strandat 3939.991 kb on + strandat 3940.008 kb on + strandat 3940.329 kb on - strand, within pdxKat 3940.608 kb on + strand, within pdxKat 3940.838 kb on + strandat 3940.939 kb on - strandat 3941.458 kb on - strandat 3941.810 kb on + strand, within ptsIat 3942.219 kb on - strand, within ptsIat 3942.409 kb on - strand, within ptsI

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RB68
remove
3,939,944 + +0.4
3,939,950 - -0.4
3,939,991 + +2.0
3,940,008 + -2.4
3,940,329 - pdxK NIAGMN_19950 0.34 +0.8
3,940,608 + pdxK NIAGMN_19950 0.66 +1.3
3,940,838 + -0.6
3,940,939 - +0.3
3,941,458 - +0.9
3,941,810 + ptsI NIAGMN_19960 0.19 +0.3
3,942,219 - ptsI NIAGMN_19960 0.42 +0.9
3,942,409 - ptsI NIAGMN_19960 0.53 +0.3

Or see this region's nucleotide sequence