Strain Fitness in Escherichia coli ECRC102 around NIAGMN_15860

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntargG and fMet_trna are separated by 347 nucleotidesfMet_trna and rimP are separated by 206 nucleotidesrimP and nusA are separated by 27 nucleotides NIAGMN_15850: argG - argininosuccinate synthase, at 3,139,251 to 3,140,594 argG NIAGMN_15855: fMet_trna - tRNA-fMet(cat), at 3,140,942 to 3,141,018 _trna NIAGMN_15860: rimP - ribosome maturation factor RimP, at 3,141,225 to 3,141,677 rimP NIAGMN_15865: nusA - Transcription termination/antitermination protein NusA, at 3,141,705 to 3,143,192 nusA Position (kb) 3141 3142Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3140.262 kb on - strand, within argGat 3140.299 kb on + strand, within argGat 3140.322 kb on - strand, within argGat 3140.322 kb on - strand, within argGat 3140.352 kb on - strand, within argGat 3140.408 kb on - strand, within argGat 3140.437 kb on + strand, within argGat 3140.471 kb on + strandat 3140.472 kb on - strandat 3140.473 kb on + strandat 3140.473 kb on + strandat 3140.473 kb on + strandat 3140.473 kb on + strandat 3140.473 kb on + strandat 3140.474 kb on - strandat 3140.474 kb on - strandat 3140.474 kb on - strandat 3140.474 kb on - strandat 3140.474 kb on - strandat 3140.479 kb on + strandat 3140.555 kb on + strandat 3140.555 kb on + strandat 3140.556 kb on - strandat 3140.556 kb on - strandat 3140.600 kb on - strandat 3140.600 kb on - strandat 3140.611 kb on + strandat 3140.612 kb on - strandat 3140.612 kb on - strandat 3140.616 kb on - strandat 3140.616 kb on - strandat 3140.713 kb on - strandat 3140.732 kb on - strandat 3140.732 kb on - strandat 3140.741 kb on - strandat 3140.809 kb on - strandat 3140.844 kb on + strandat 3140.845 kb on - strandat 3140.847 kb on - strandat 3140.895 kb on + strandat 3141.137 kb on + strandat 3141.139 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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3,140,262 - argG NIAGMN_15850 0.75 -0.2
3,140,299 + argG NIAGMN_15850 0.78 +0.4
3,140,322 - argG NIAGMN_15850 0.80 -0.8
3,140,322 - argG NIAGMN_15850 0.80 +0.5
3,140,352 - argG NIAGMN_15850 0.82 +0.9
3,140,408 - argG NIAGMN_15850 0.86 -1.2
3,140,437 + argG NIAGMN_15850 0.88 -1.1
3,140,471 + -0.0
3,140,472 - +0.7
3,140,473 + -0.1
3,140,473 + +0.1
3,140,473 + -1.6
3,140,473 + -0.6
3,140,473 + +0.7
3,140,474 - +0.4
3,140,474 - -1.6
3,140,474 - -0.9
3,140,474 - -0.8
3,140,474 - +0.6
3,140,479 + -0.6
3,140,555 + +1.7
3,140,555 + +1.0
3,140,556 - +0.1
3,140,556 - +1.7
3,140,600 - -3.2
3,140,600 - -0.7
3,140,611 + +0.5
3,140,612 - +0.1
3,140,612 - -0.7
3,140,616 - -0.6
3,140,616 - +0.4
3,140,713 - -1.3
3,140,732 - -0.3
3,140,732 - +1.7
3,140,741 - -0.3
3,140,809 - +0.7
3,140,844 + +0.7
3,140,845 - -0.2
3,140,847 - -0.7
3,140,895 + -0.6
3,141,137 + -0.9
3,141,139 + +3.9

Or see this region's nucleotide sequence