Strain Fitness in Escherichia coli ECRC102 around NIAGMN_15655

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyhcC and arcB are separated by 95 nucleotidesarcB and elbB are separated by 229 nucleotideselbB and mtgA overlap by 4 nucleotides NIAGMN_15650: yhcC - TIGR01212 family radical SAM protein, at 3,105,326 to 3,106,255 yhcC NIAGMN_15655: arcB - aerobic respiration two-component sensor histidine kinase ArcB, at 3,106,351 to 3,108,687 arcB NIAGMN_15665: elbB - isoprenoid biosynthesis glyoxalase ElbB, at 3,108,917 to 3,109,570 elbB NIAGMN_15670: mtgA - monofunctional biosynthetic peptidoglycan transglycosylase, at 3,109,567 to 3,110,295 mtgA Position (kb) 3106 3107 3108 3109Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3105.394 kb on + strandat 3105.394 kb on + strandat 3105.394 kb on + strandat 3105.418 kb on + strandat 3105.439 kb on + strand, within yhcCat 3105.440 kb on - strand, within yhcCat 3105.470 kb on - strand, within yhcCat 3105.543 kb on + strand, within yhcCat 3105.563 kb on + strand, within yhcCat 3105.564 kb on - strand, within yhcCat 3105.584 kb on + strand, within yhcCat 3105.584 kb on + strand, within yhcCat 3105.585 kb on - strand, within yhcCat 3105.586 kb on + strand, within yhcCat 3105.586 kb on + strand, within yhcCat 3105.587 kb on - strand, within yhcCat 3105.622 kb on + strand, within yhcCat 3105.622 kb on + strand, within yhcCat 3105.622 kb on + strand, within yhcCat 3105.622 kb on + strand, within yhcCat 3105.622 kb on + strand, within yhcCat 3105.622 kb on + strand, within yhcCat 3105.623 kb on - strand, within yhcCat 3105.623 kb on - strand, within yhcCat 3105.623 kb on - strand, within yhcCat 3105.623 kb on - strand, within yhcCat 3105.623 kb on - strand, within yhcCat 3105.626 kb on + strand, within yhcCat 3105.652 kb on + strand, within yhcCat 3105.673 kb on + strand, within yhcCat 3105.674 kb on - strand, within yhcCat 3105.674 kb on - strand, within yhcCat 3105.722 kb on + strand, within yhcCat 3105.722 kb on + strand, within yhcCat 3105.722 kb on + strand, within yhcCat 3105.723 kb on - strand, within yhcCat 3105.723 kb on - strand, within yhcCat 3105.723 kb on - strand, within yhcCat 3105.724 kb on + strand, within yhcCat 3105.724 kb on + strand, within yhcCat 3105.724 kb on + strand, within yhcCat 3105.724 kb on + strand, within yhcCat 3105.725 kb on - strand, within yhcCat 3105.763 kb on - strand, within yhcCat 3105.829 kb on + strand, within yhcCat 3105.829 kb on + strand, within yhcCat 3105.829 kb on + strand, within yhcCat 3105.830 kb on - strand, within yhcCat 3105.876 kb on + strand, within yhcCat 3105.876 kb on + strand, within yhcCat 3105.876 kb on + strand, within yhcCat 3105.876 kb on + strand, within yhcCat 3105.876 kb on + strand, within yhcCat 3105.877 kb on - strand, within yhcCat 3105.877 kb on - strand, within yhcCat 3105.877 kb on - strand, within yhcCat 3105.877 kb on - strand, within yhcCat 3105.957 kb on + strand, within yhcCat 3105.958 kb on - strand, within yhcCat 3105.958 kb on - strand, within yhcCat 3105.976 kb on + strand, within yhcCat 3105.995 kb on - strand, within yhcCat 3106.046 kb on + strand, within yhcCat 3106.047 kb on - strand, within yhcCat 3106.078 kb on + strand, within yhcCat 3106.078 kb on + strand, within yhcCat 3106.097 kb on + strand, within yhcCat 3106.097 kb on + strand, within yhcCat 3106.097 kb on + strand, within yhcCat 3106.097 kb on + strand, within yhcCat 3106.098 kb on - strand, within yhcCat 3106.190 kb on + strandat 3106.191 kb on - strandat 3106.209 kb on + strandat 3106.210 kb on - strandat 3106.291 kb on + strandat 3106.291 kb on + strandat 3106.291 kb on + strandat 3106.292 kb on - strandat 3106.294 kb on - strandat 3106.298 kb on + strandat 3106.298 kb on + strandat 3106.298 kb on + strandat 3106.299 kb on - strandat 3106.299 kb on - strandat 3106.299 kb on - strandat 3106.299 kb on - strandat 3106.299 kb on - strandat 3106.318 kb on + strandat 3106.378 kb on + strandat 3106.381 kb on + strandat 3106.381 kb on + strandat 3106.381 kb on + strandat 3106.382 kb on - strandat 3106.515 kb on + strandat 3106.524 kb on + strandat 3106.525 kb on - strandat 3106.561 kb on + strandat 3106.694 kb on + strand, within arcBat 3106.695 kb on - strand, within arcBat 3106.695 kb on - strand, within arcBat 3106.872 kb on + strand, within arcBat 3106.961 kb on - strand, within arcBat 3107.033 kb on - strand, within arcBat 3107.099 kb on - strand, within arcBat 3107.376 kb on + strand, within arcBat 3107.694 kb on + strand, within arcBat 3107.710 kb on + strand, within arcBat 3107.710 kb on + strand, within arcBat 3107.711 kb on - strand, within arcBat 3107.711 kb on - strand, within arcBat 3107.910 kb on + strand, within arcBat 3107.911 kb on - strand, within arcBat 3107.997 kb on + strand, within arcBat 3107.997 kb on + strand, within arcBat 3108.108 kb on + strand, within arcBat 3108.282 kb on + strand, within arcBat 3108.328 kb on - strand, within arcBat 3108.367 kb on + strand, within arcBat 3108.367 kb on + strand, within arcBat 3108.368 kb on - strand, within arcBat 3108.380 kb on + strand, within arcBat 3108.507 kb on + strandat 3108.594 kb on + strandat 3108.714 kb on - strandat 3108.754 kb on + strandat 3108.755 kb on - strandat 3108.767 kb on + strandat 3108.767 kb on + strandat 3108.767 kb on + strandat 3108.767 kb on + strandat 3108.767 kb on + strandat 3108.767 kb on + strandat 3108.805 kb on + strandat 3108.805 kb on + strandat 3108.806 kb on - strandat 3108.806 kb on - strandat 3108.810 kb on + strandat 3108.810 kb on + strandat 3108.811 kb on - strandat 3108.811 kb on - strandat 3108.820 kb on + strandat 3108.832 kb on + strandat 3108.832 kb on + strandat 3108.832 kb on + strandat 3108.833 kb on - strandat 3108.915 kb on + strandat 3108.915 kb on + strandat 3108.996 kb on + strand, within elbBat 3109.000 kb on + strand, within elbBat 3109.000 kb on + strand, within elbBat 3109.060 kb on + strand, within elbBat 3109.061 kb on - strand, within elbBat 3109.061 kb on - strand, within elbBat 3109.071 kb on + strand, within elbBat 3109.072 kb on - strand, within elbBat 3109.072 kb on - strand, within elbBat 3109.125 kb on + strand, within elbBat 3109.321 kb on + strand, within elbBat 3109.321 kb on + strand, within elbBat 3109.321 kb on + strand, within elbBat 3109.321 kb on + strand, within elbBat 3109.321 kb on + strand, within elbBat 3109.322 kb on - strand, within elbBat 3109.378 kb on + strand, within elbBat 3109.468 kb on + strand, within elbBat 3109.469 kb on - strand, within elbBat 3109.490 kb on + strand, within elbBat 3109.490 kb on + strand, within elbBat 3109.491 kb on - strand, within elbBat 3109.491 kb on - strand, within elbBat 3109.491 kb on - strand, within elbBat 3109.491 kb on - strand, within elbBat 3109.492 kb on + strand, within elbBat 3109.492 kb on + strand, within elbBat 3109.492 kb on + strand, within elbBat 3109.492 kb on + strand, within elbBat 3109.492 kb on + strand, within elbBat 3109.492 kb on + strand, within elbBat 3109.492 kb on + strand, within elbBat 3109.492 kb on + strand, within elbBat 3109.492 kb on + strand, within elbBat 3109.492 kb on + strand, within elbBat 3109.492 kb on + strand, within elbBat 3109.493 kb on - strand, within elbBat 3109.493 kb on - strand, within elbBat 3109.493 kb on - strand, within elbBat 3109.493 kb on - strand, within elbBat 3109.493 kb on - strand, within elbBat 3109.493 kb on - strand, within elbBat 3109.493 kb on - strand, within elbBat 3109.493 kb on - strand, within elbBat 3109.493 kb on - strand, within elbBat 3109.493 kb on - strand, within elbBat 3109.493 kb on - strand, within elbBat 3109.534 kb on + strandat 3109.534 kb on + strandat 3109.534 kb on + strandat 3109.534 kb on + strandat 3109.535 kb on - strandat 3109.535 kb on - strandat 3109.593 kb on + strandat 3109.593 kb on + strandat 3109.593 kb on + strandat 3109.668 kb on + strand, within mtgA

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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3,105,394 + -0.8
3,105,394 + +0.8
3,105,394 + +0.4
3,105,418 + +0.3
3,105,439 + yhcC NIAGMN_15650 0.12 -1.8
3,105,440 - yhcC NIAGMN_15650 0.12 +0.2
3,105,470 - yhcC NIAGMN_15650 0.15 -0.5
3,105,543 + yhcC NIAGMN_15650 0.23 -0.6
3,105,563 + yhcC NIAGMN_15650 0.25 +0.2
3,105,564 - yhcC NIAGMN_15650 0.26 -0.0
3,105,584 + yhcC NIAGMN_15650 0.28 -0.5
3,105,584 + yhcC NIAGMN_15650 0.28 -0.4
3,105,585 - yhcC NIAGMN_15650 0.28 -0.3
3,105,586 + yhcC NIAGMN_15650 0.28 +0.2
3,105,586 + yhcC NIAGMN_15650 0.28 +0.1
3,105,587 - yhcC NIAGMN_15650 0.28 -0.3
3,105,622 + yhcC NIAGMN_15650 0.32 -1.2
3,105,622 + yhcC NIAGMN_15650 0.32 +0.2
3,105,622 + yhcC NIAGMN_15650 0.32 +0.6
3,105,622 + yhcC NIAGMN_15650 0.32 -0.4
3,105,622 + yhcC NIAGMN_15650 0.32 +0.4
3,105,622 + yhcC NIAGMN_15650 0.32 -1.1
3,105,623 - yhcC NIAGMN_15650 0.32 -1.5
3,105,623 - yhcC NIAGMN_15650 0.32 -0.5
3,105,623 - yhcC NIAGMN_15650 0.32 +1.3
3,105,623 - yhcC NIAGMN_15650 0.32 +0.7
3,105,623 - yhcC NIAGMN_15650 0.32 -1.0
3,105,626 + yhcC NIAGMN_15650 0.32 -0.6
3,105,652 + yhcC NIAGMN_15650 0.35 +1.0
3,105,673 + yhcC NIAGMN_15650 0.37 -0.3
3,105,674 - yhcC NIAGMN_15650 0.37 +0.4
3,105,674 - yhcC NIAGMN_15650 0.37 +0.7
3,105,722 + yhcC NIAGMN_15650 0.43 -0.4
3,105,722 + yhcC NIAGMN_15650 0.43 +0.4
3,105,722 + yhcC NIAGMN_15650 0.43 -0.3
3,105,723 - yhcC NIAGMN_15650 0.43 +0.2
3,105,723 - yhcC NIAGMN_15650 0.43 +1.7
3,105,723 - yhcC NIAGMN_15650 0.43 +0.7
3,105,724 + yhcC NIAGMN_15650 0.43 -0.3
3,105,724 + yhcC NIAGMN_15650 0.43 -0.2
3,105,724 + yhcC NIAGMN_15650 0.43 +0.9
3,105,724 + yhcC NIAGMN_15650 0.43 -0.2
3,105,725 - yhcC NIAGMN_15650 0.43 -0.1
3,105,763 - yhcC NIAGMN_15650 0.47 +0.0
3,105,829 + yhcC NIAGMN_15650 0.54 +0.4
3,105,829 + yhcC NIAGMN_15650 0.54 +0.4
3,105,829 + yhcC NIAGMN_15650 0.54 -0.3
3,105,830 - yhcC NIAGMN_15650 0.54 +0.7
3,105,876 + yhcC NIAGMN_15650 0.59 +0.7
3,105,876 + yhcC NIAGMN_15650 0.59 -0.5
3,105,876 + yhcC NIAGMN_15650 0.59 -0.3
3,105,876 + yhcC NIAGMN_15650 0.59 +0.3
3,105,876 + yhcC NIAGMN_15650 0.59 +0.1
3,105,877 - yhcC NIAGMN_15650 0.59 +0.2
3,105,877 - yhcC NIAGMN_15650 0.59 -0.3
3,105,877 - yhcC NIAGMN_15650 0.59 +0.0
3,105,877 - yhcC NIAGMN_15650 0.59 -0.5
3,105,957 + yhcC NIAGMN_15650 0.68 +0.8
3,105,958 - yhcC NIAGMN_15650 0.68 -1.4
3,105,958 - yhcC NIAGMN_15650 0.68 -0.1
3,105,976 + yhcC NIAGMN_15650 0.70 +1.2
3,105,995 - yhcC NIAGMN_15650 0.72 +0.0
3,106,046 + yhcC NIAGMN_15650 0.77 +1.5
3,106,047 - yhcC NIAGMN_15650 0.78 -0.6
3,106,078 + yhcC NIAGMN_15650 0.81 +0.3
3,106,078 + yhcC NIAGMN_15650 0.81 +0.6
3,106,097 + yhcC NIAGMN_15650 0.83 +1.1
3,106,097 + yhcC NIAGMN_15650 0.83 +0.2
3,106,097 + yhcC NIAGMN_15650 0.83 -1.2
3,106,097 + yhcC NIAGMN_15650 0.83 -0.8
3,106,098 - yhcC NIAGMN_15650 0.83 +0.7
3,106,190 + -0.3
3,106,191 - +0.5
3,106,209 + +0.5
3,106,210 - +1.2
3,106,291 + -0.3
3,106,291 + +0.6
3,106,291 + +0.0
3,106,292 - -0.3
3,106,294 - -1.5
3,106,298 + +0.3
3,106,298 + -0.8
3,106,298 + -0.5
3,106,299 - -1.3
3,106,299 - +0.7
3,106,299 - +0.2
3,106,299 - -1.3
3,106,299 - -0.1
3,106,318 + -1.5
3,106,378 + +1.2
3,106,381 + +1.7
3,106,381 + -0.7
3,106,381 + +0.7
3,106,382 - +0.7
3,106,515 + +1.1
3,106,524 + +1.2
3,106,525 - -0.6
3,106,561 + +0.2
3,106,694 + arcB NIAGMN_15655 0.15 +0.6
3,106,695 - arcB NIAGMN_15655 0.15 +1.2
3,106,695 - arcB NIAGMN_15655 0.15 -0.8
3,106,872 + arcB NIAGMN_15655 0.22 +1.3
3,106,961 - arcB NIAGMN_15655 0.26 -0.8
3,107,033 - arcB NIAGMN_15655 0.29 +0.7
3,107,099 - arcB NIAGMN_15655 0.32 -0.8
3,107,376 + arcB NIAGMN_15655 0.44 +1.7
3,107,694 + arcB NIAGMN_15655 0.57 +0.2
3,107,710 + arcB NIAGMN_15655 0.58 -1.3
3,107,710 + arcB NIAGMN_15655 0.58 +2.7
3,107,711 - arcB NIAGMN_15655 0.58 -1.1
3,107,711 - arcB NIAGMN_15655 0.58 +2.3
3,107,910 + arcB NIAGMN_15655 0.67 -1.5
3,107,911 - arcB NIAGMN_15655 0.67 -0.6
3,107,997 + arcB NIAGMN_15655 0.70 +0.7
3,107,997 + arcB NIAGMN_15655 0.70 +0.2
3,108,108 + arcB NIAGMN_15655 0.75 -0.6
3,108,282 + arcB NIAGMN_15655 0.83 -0.3
3,108,328 - arcB NIAGMN_15655 0.85 +0.7
3,108,367 + arcB NIAGMN_15655 0.86 +1.7
3,108,367 + arcB NIAGMN_15655 0.86 -0.3
3,108,368 - arcB NIAGMN_15655 0.86 -0.6
3,108,380 + arcB NIAGMN_15655 0.87 +0.2
3,108,507 + -1.6
3,108,594 + +0.7
3,108,714 - +1.3
3,108,754 + -2.5
3,108,755 - -0.3
3,108,767 + -0.5
3,108,767 + -0.4
3,108,767 + -0.4
3,108,767 + -0.2
3,108,767 + -2.0
3,108,767 + +3.0
3,108,805 + +1.3
3,108,805 + +0.2
3,108,806 - -0.7
3,108,806 - +0.3
3,108,810 + -1.5
3,108,810 + -0.2
3,108,811 - -0.6
3,108,811 - -0.5
3,108,820 + -1.0
3,108,832 + -0.7
3,108,832 + +0.8
3,108,832 + -0.9
3,108,833 - -1.4
3,108,915 + -1.3
3,108,915 + -2.5
3,108,996 + elbB NIAGMN_15665 0.12 -0.7
3,109,000 + elbB NIAGMN_15665 0.13 +0.3
3,109,000 + elbB NIAGMN_15665 0.13 +1.2
3,109,060 + elbB NIAGMN_15665 0.22 -1.3
3,109,061 - elbB NIAGMN_15665 0.22 +0.7
3,109,061 - elbB NIAGMN_15665 0.22 +0.7
3,109,071 + elbB NIAGMN_15665 0.24 -0.3
3,109,072 - elbB NIAGMN_15665 0.24 -0.5
3,109,072 - elbB NIAGMN_15665 0.24 -0.4
3,109,125 + elbB NIAGMN_15665 0.32 -0.5
3,109,321 + elbB NIAGMN_15665 0.62 +0.7
3,109,321 + elbB NIAGMN_15665 0.62 +0.6
3,109,321 + elbB NIAGMN_15665 0.62 +1.7
3,109,321 + elbB NIAGMN_15665 0.62 +0.2
3,109,321 + elbB NIAGMN_15665 0.62 +0.7
3,109,322 - elbB NIAGMN_15665 0.62 +0.7
3,109,378 + elbB NIAGMN_15665 0.70 +0.2
3,109,468 + elbB NIAGMN_15665 0.84 +2.3
3,109,469 - elbB NIAGMN_15665 0.84 +2.3
3,109,490 + elbB NIAGMN_15665 0.88 +0.4
3,109,490 + elbB NIAGMN_15665 0.88 -1.8
3,109,491 - elbB NIAGMN_15665 0.88 -0.8
3,109,491 - elbB NIAGMN_15665 0.88 +1.3
3,109,491 - elbB NIAGMN_15665 0.88 +0.2
3,109,491 - elbB NIAGMN_15665 0.88 +1.7
3,109,492 + elbB NIAGMN_15665 0.88 -0.7
3,109,492 + elbB NIAGMN_15665 0.88 +0.6
3,109,492 + elbB NIAGMN_15665 0.88 +0.1
3,109,492 + elbB NIAGMN_15665 0.88 +1.2
3,109,492 + elbB NIAGMN_15665 0.88 -0.6
3,109,492 + elbB NIAGMN_15665 0.88 +0.6
3,109,492 + elbB NIAGMN_15665 0.88 -0.0
3,109,492 + elbB NIAGMN_15665 0.88 +0.2
3,109,492 + elbB NIAGMN_15665 0.88 +0.2
3,109,492 + elbB NIAGMN_15665 0.88 +0.5
3,109,492 + elbB NIAGMN_15665 0.88 +2.8
3,109,493 - elbB NIAGMN_15665 0.88 -1.1
3,109,493 - elbB NIAGMN_15665 0.88 +1.3
3,109,493 - elbB NIAGMN_15665 0.88 +1.5
3,109,493 - elbB NIAGMN_15665 0.88 -0.6
3,109,493 - elbB NIAGMN_15665 0.88 -0.0
3,109,493 - elbB NIAGMN_15665 0.88 +1.1
3,109,493 - elbB NIAGMN_15665 0.88 -0.8
3,109,493 - elbB NIAGMN_15665 0.88 -2.0
3,109,493 - elbB NIAGMN_15665 0.88 +0.2
3,109,493 - elbB NIAGMN_15665 0.88 -0.6
3,109,493 - elbB NIAGMN_15665 0.88 -0.3
3,109,534 + +0.7
3,109,534 + -1.3
3,109,534 + -1.2
3,109,534 + +1.2
3,109,535 - -1.2
3,109,535 - +0.4
3,109,593 + +0.3
3,109,593 + +0.4
3,109,593 + -0.1
3,109,668 + mtgA NIAGMN_15670 0.14 +0.1

Or see this region's nucleotide sequence