Strain Fitness in Escherichia coli ECRC102 around NIAGMN_14135

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntslp and NIAGMN_14135 are separated by 353 nucleotidesNIAGMN_14135 and arsC are separated by 626 nucleotides NIAGMN_14130: slp - outer membrane lipoprotein Slp, at 2,814,092 to 2,814,658 slp NIAGMN_14135: NIAGMN_14135 - YhiS, at 2,815,012 to 2,816,127 _14135 NIAGMN_14140: arsC - glutaredoxin-dependent arsenate reductase, at 2,816,754 to 2,817,179 arsC Position (kb) 2815 2816 2817Strain fitness (log2 ratio) -3 -2 -1 0 1at 2814.012 kb on + strandat 2814.044 kb on + strandat 2814.094 kb on - strandat 2814.114 kb on - strandat 2814.135 kb on + strandat 2814.136 kb on - strandat 2814.136 kb on - strandat 2814.136 kb on - strandat 2814.136 kb on - strandat 2814.136 kb on - strandat 2814.139 kb on - strandat 2814.139 kb on - strandat 2814.178 kb on - strand, within slpat 2814.205 kb on + strand, within slpat 2814.206 kb on - strand, within slpat 2814.206 kb on - strand, within slpat 2814.247 kb on + strand, within slpat 2814.265 kb on + strand, within slpat 2814.265 kb on + strand, within slpat 2814.266 kb on - strand, within slpat 2814.268 kb on - strand, within slpat 2814.284 kb on - strand, within slpat 2814.322 kb on + strand, within slpat 2814.322 kb on + strand, within slpat 2814.340 kb on - strand, within slpat 2814.390 kb on + strand, within slpat 2814.417 kb on + strand, within slpat 2814.417 kb on + strand, within slpat 2814.418 kb on - strand, within slpat 2814.418 kb on - strand, within slpat 2814.422 kb on - strand, within slpat 2814.431 kb on + strand, within slpat 2814.435 kb on - strand, within slpat 2814.446 kb on + strand, within slpat 2814.446 kb on + strand, within slpat 2814.454 kb on + strand, within slpat 2814.454 kb on + strand, within slpat 2814.455 kb on - strand, within slpat 2814.516 kb on + strand, within slpat 2814.516 kb on + strand, within slpat 2814.516 kb on + strand, within slpat 2814.516 kb on + strand, within slpat 2814.516 kb on + strand, within slpat 2814.516 kb on + strand, within slpat 2814.516 kb on + strand, within slpat 2814.516 kb on + strand, within slpat 2814.516 kb on + strand, within slpat 2814.517 kb on - strand, within slpat 2814.517 kb on - strand, within slpat 2814.517 kb on - strand, within slpat 2814.519 kb on - strand, within slpat 2814.519 kb on - strand, within slpat 2814.602 kb on - strandat 2814.602 kb on - strandat 2814.602 kb on - strandat 2814.661 kb on + strandat 2814.662 kb on - strandat 2814.670 kb on + strandat 2814.692 kb on - strandat 2814.699 kb on - strandat 2814.767 kb on + strandat 2814.797 kb on - strandat 2814.832 kb on - strandat 2814.835 kb on - strandat 2814.835 kb on - strandat 2814.835 kb on - strandat 2814.866 kb on + strandat 2815.148 kb on + strand, within NIAGMN_14135at 2815.579 kb on - strand, within NIAGMN_14135at 2815.768 kb on - strand, within NIAGMN_14135at 2815.825 kb on + strand, within NIAGMN_14135at 2815.839 kb on + strand, within NIAGMN_14135at 2815.950 kb on - strand, within NIAGMN_14135at 2816.127 kb on + strandat 2816.213 kb on - strandat 2816.360 kb on + strandat 2816.415 kb on - strandat 2816.435 kb on + strandat 2816.435 kb on + strandat 2816.446 kb on + strandat 2816.476 kb on + strandat 2816.542 kb on + strandat 2816.542 kb on + strandat 2816.542 kb on + strandat 2816.542 kb on + strandat 2816.543 kb on - strandat 2816.543 kb on - strandat 2816.543 kb on - strandat 2816.543 kb on - strandat 2816.585 kb on - strandat 2816.631 kb on + strandat 2816.711 kb on - strandat 2816.745 kb on - strandat 2816.747 kb on - strandat 2816.983 kb on + strand, within arsCat 2816.983 kb on + strand, within arsCat 2816.999 kb on + strand, within arsCat 2817.079 kb on + strand, within arsC

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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2,814,012 + +0.1
2,814,044 + -0.1
2,814,094 - -1.2
2,814,114 - +0.8
2,814,135 + +1.0
2,814,136 - -0.9
2,814,136 - +0.8
2,814,136 - -1.4
2,814,136 - -1.2
2,814,136 - +0.7
2,814,139 - -0.4
2,814,139 - -0.0
2,814,178 - slp NIAGMN_14130 0.15 +0.5
2,814,205 + slp NIAGMN_14130 0.20 +0.3
2,814,206 - slp NIAGMN_14130 0.20 -0.6
2,814,206 - slp NIAGMN_14130 0.20 -1.3
2,814,247 + slp NIAGMN_14130 0.27 -0.8
2,814,265 + slp NIAGMN_14130 0.31 -1.8
2,814,265 + slp NIAGMN_14130 0.31 +0.6
2,814,266 - slp NIAGMN_14130 0.31 -1.0
2,814,268 - slp NIAGMN_14130 0.31 +0.6
2,814,284 - slp NIAGMN_14130 0.34 -0.8
2,814,322 + slp NIAGMN_14130 0.41 -0.4
2,814,322 + slp NIAGMN_14130 0.41 -2.7
2,814,340 - slp NIAGMN_14130 0.44 +0.2
2,814,390 + slp NIAGMN_14130 0.53 +0.5
2,814,417 + slp NIAGMN_14130 0.57 -0.7
2,814,417 + slp NIAGMN_14130 0.57 -0.5
2,814,418 - slp NIAGMN_14130 0.57 +0.0
2,814,418 - slp NIAGMN_14130 0.57 +1.6
2,814,422 - slp NIAGMN_14130 0.58 -0.4
2,814,431 + slp NIAGMN_14130 0.60 -2.3
2,814,435 - slp NIAGMN_14130 0.60 -0.1
2,814,446 + slp NIAGMN_14130 0.62 -0.9
2,814,446 + slp NIAGMN_14130 0.62 -0.7
2,814,454 + slp NIAGMN_14130 0.64 +0.6
2,814,454 + slp NIAGMN_14130 0.64 -0.2
2,814,455 - slp NIAGMN_14130 0.64 +0.4
2,814,516 + slp NIAGMN_14130 0.75 -0.6
2,814,516 + slp NIAGMN_14130 0.75 -1.4
2,814,516 + slp NIAGMN_14130 0.75 -0.5
2,814,516 + slp NIAGMN_14130 0.75 -0.4
2,814,516 + slp NIAGMN_14130 0.75 -0.5
2,814,516 + slp NIAGMN_14130 0.75 +1.2
2,814,516 + slp NIAGMN_14130 0.75 -0.5
2,814,516 + slp NIAGMN_14130 0.75 -0.7
2,814,516 + slp NIAGMN_14130 0.75 -0.4
2,814,517 - slp NIAGMN_14130 0.75 -0.9
2,814,517 - slp NIAGMN_14130 0.75 -2.8
2,814,517 - slp NIAGMN_14130 0.75 +0.6
2,814,519 - slp NIAGMN_14130 0.75 -0.9
2,814,519 - slp NIAGMN_14130 0.75 -0.2
2,814,602 - -0.7
2,814,602 - -2.2
2,814,602 - -1.9
2,814,661 + -1.4
2,814,662 - -0.3
2,814,670 + -0.8
2,814,692 - -0.1
2,814,699 - -0.6
2,814,767 + -0.6
2,814,797 - -0.4
2,814,832 - -0.4
2,814,835 - -0.7
2,814,835 - +1.4
2,814,835 - +0.3
2,814,866 + -0.2
2,815,148 + NIAGMN_14135 0.12 -0.9
2,815,579 - NIAGMN_14135 0.51 +0.1
2,815,768 - NIAGMN_14135 0.68 -0.9
2,815,825 + NIAGMN_14135 0.73 -0.6
2,815,839 + NIAGMN_14135 0.74 -0.1
2,815,950 - NIAGMN_14135 0.84 -0.7
2,816,127 + +0.4
2,816,213 - +0.1
2,816,360 + +0.4
2,816,415 - +0.1
2,816,435 + -0.6
2,816,435 + +0.2
2,816,446 + -0.8
2,816,476 + -1.0
2,816,542 + -0.7
2,816,542 + -0.9
2,816,542 + +0.6
2,816,542 + -0.1
2,816,543 - -0.2
2,816,543 - -2.3
2,816,543 - +0.1
2,816,543 - -1.1
2,816,585 - -0.4
2,816,631 + -0.7
2,816,711 - +0.2
2,816,745 - +0.6
2,816,747 - -0.4
2,816,983 + arsC NIAGMN_14140 0.54 -0.4
2,816,983 + arsC NIAGMN_14140 0.54 -0.2
2,816,999 + arsC NIAGMN_14140 0.58 +1.0
2,817,079 + arsC NIAGMN_14140 0.76 -0.7

Or see this region's nucleotide sequence