Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt waaH and yibQ are separated by 5 nucleotides yibQ and envC are separated by 3 nucleotides envC and gpmM are separated by 33 nucleotides
NIAGMN_13480: waaH - UDP-glucuronate:LPS(HepIII) glycosyltransferase, at 2,664,818 to 2,665,834
waaH
NIAGMN_13485: yibQ - Uncharacterized protein YibQ, at 2,665,840 to 2,666,799
yibQ
NIAGMN_13490: envC - murein hydrolase activator EnvC, at 2,666,803 to 2,668,062
envC
NIAGMN_13495: gpmM - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 2,668,096 to 2,669,640
gpmM
Position (kb)
2666
2667
2668
2669 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2665.911 kb on - strand at 2665.945 kb on + strand, within yibQ at 2665.946 kb on - strand, within yibQ at 2665.949 kb on - strand, within yibQ at 2665.966 kb on - strand, within yibQ at 2665.971 kb on - strand, within yibQ at 2665.982 kb on - strand, within yibQ at 2666.061 kb on + strand, within yibQ at 2666.061 kb on + strand, within yibQ at 2666.061 kb on + strand, within yibQ at 2666.061 kb on + strand, within yibQ at 2666.067 kb on + strand, within yibQ at 2666.068 kb on - strand, within yibQ at 2666.068 kb on - strand, within yibQ at 2666.112 kb on + strand, within yibQ at 2666.113 kb on - strand, within yibQ at 2666.113 kb on - strand, within yibQ at 2666.130 kb on + strand, within yibQ at 2666.131 kb on - strand, within yibQ at 2666.132 kb on + strand, within yibQ at 2666.133 kb on - strand, within yibQ at 2666.146 kb on + strand, within yibQ at 2666.147 kb on - strand, within yibQ at 2666.147 kb on - strand, within yibQ at 2666.328 kb on + strand, within yibQ at 2666.331 kb on + strand, within yibQ at 2666.331 kb on + strand, within yibQ at 2666.332 kb on - strand, within yibQ at 2666.357 kb on + strand, within yibQ at 2666.367 kb on - strand, within yibQ at 2666.397 kb on + strand, within yibQ at 2666.410 kb on - strand, within yibQ at 2666.453 kb on + strand, within yibQ at 2666.454 kb on - strand, within yibQ at 2666.454 kb on - strand, within yibQ at 2666.481 kb on + strand, within yibQ at 2666.482 kb on - strand, within yibQ at 2666.523 kb on + strand, within yibQ at 2666.638 kb on + strand, within yibQ at 2666.653 kb on - strand, within yibQ at 2666.781 kb on + strand at 2666.782 kb on - strand at 2666.804 kb on + strand at 2666.805 kb on - strand at 2666.862 kb on - strand at 2666.967 kb on - strand, within envC at 2667.064 kb on - strand, within envC at 2667.110 kb on - strand, within envC at 2667.110 kb on - strand, within envC at 2667.121 kb on + strand, within envC at 2667.122 kb on - strand, within envC at 2667.122 kb on - strand, within envC at 2667.122 kb on - strand, within envC at 2667.122 kb on - strand, within envC at 2667.122 kb on - strand, within envC at 2667.135 kb on - strand, within envC at 2667.135 kb on - strand, within envC at 2667.239 kb on + strand, within envC at 2667.240 kb on - strand, within envC at 2667.439 kb on - strand, within envC at 2667.489 kb on - strand, within envC at 2667.489 kb on - strand, within envC at 2667.490 kb on + strand, within envC at 2667.491 kb on - strand, within envC at 2667.491 kb on - strand, within envC at 2667.491 kb on - strand, within envC at 2667.491 kb on - strand, within envC at 2667.612 kb on - strand, within envC at 2667.936 kb on + strand, within envC at 2668.065 kb on + strand at 2668.066 kb on - strand at 2668.066 kb on - strand at 2668.069 kb on - strand at 2668.069 kb on - strand at 2668.069 kb on - strand at 2668.120 kb on - strand at 2668.120 kb on - strand at 2668.226 kb on + strand at 2668.226 kb on + strand at 2668.226 kb on + strand at 2668.227 kb on - strand at 2668.227 kb on - strand at 2668.227 kb on - strand at 2668.395 kb on + strand, within gpmM at 2668.426 kb on + strand, within gpmM at 2668.426 kb on + strand, within gpmM at 2668.426 kb on + strand, within gpmM at 2668.427 kb on - strand, within gpmM at 2668.427 kb on - strand, within gpmM at 2668.427 kb on - strand, within gpmM at 2668.427 kb on - strand, within gpmM at 2668.445 kb on + strand, within gpmM at 2668.446 kb on - strand, within gpmM at 2668.449 kb on + strand, within gpmM at 2668.449 kb on + strand, within gpmM at 2668.449 kb on + strand, within gpmM at 2668.449 kb on + strand, within gpmM at 2668.450 kb on - strand, within gpmM at 2668.450 kb on - strand, within gpmM at 2668.450 kb on - strand, within gpmM at 2668.450 kb on - strand, within gpmM at 2668.456 kb on - strand, within gpmM at 2668.456 kb on - strand, within gpmM at 2668.456 kb on - strand, within gpmM at 2668.456 kb on - strand, within gpmM at 2668.466 kb on + strand, within gpmM at 2668.467 kb on - strand, within gpmM at 2668.467 kb on - strand, within gpmM at 2668.538 kb on + strand, within gpmM at 2668.539 kb on - strand, within gpmM at 2668.539 kb on - strand, within gpmM at 2668.539 kb on - strand, within gpmM at 2668.542 kb on + strand, within gpmM at 2668.542 kb on + strand, within gpmM at 2668.542 kb on + strand, within gpmM at 2668.543 kb on - strand, within gpmM at 2668.597 kb on + strand, within gpmM at 2668.597 kb on + strand, within gpmM at 2668.620 kb on + strand, within gpmM at 2668.620 kb on + strand, within gpmM at 2668.621 kb on - strand, within gpmM at 2668.621 kb on - strand, within gpmM at 2668.621 kb on - strand, within gpmM at 2668.650 kb on + strand, within gpmM at 2668.650 kb on + strand, within gpmM at 2668.650 kb on + strand, within gpmM at 2668.650 kb on + strand, within gpmM at 2668.650 kb on + strand, within gpmM at 2668.650 kb on + strand, within gpmM at 2668.650 kb on + strand, within gpmM at 2668.651 kb on - strand, within gpmM at 2668.651 kb on - strand, within gpmM at 2668.698 kb on + strand, within gpmM at 2668.749 kb on - strand, within gpmM at 2668.961 kb on + strand, within gpmM at 2668.962 kb on - strand, within gpmM at 2668.962 kb on - strand, within gpmM at 2669.030 kb on + strand, within gpmM at 2669.030 kb on + strand, within gpmM at 2669.031 kb on - strand, within gpmM
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 2,665,911 - -0.2 2,665,945 + yibQ NIAGMN_13485 0.11 -0.7 2,665,946 - yibQ NIAGMN_13485 0.11 +0.9 2,665,949 - yibQ NIAGMN_13485 0.11 -0.7 2,665,966 - yibQ NIAGMN_13485 0.13 -0.6 2,665,971 - yibQ NIAGMN_13485 0.14 -1.0 2,665,982 - yibQ NIAGMN_13485 0.15 -0.6 2,666,061 + yibQ NIAGMN_13485 0.23 -0.4 2,666,061 + yibQ NIAGMN_13485 0.23 -0.0 2,666,061 + yibQ NIAGMN_13485 0.23 -2.4 2,666,061 + yibQ NIAGMN_13485 0.23 -0.7 2,666,067 + yibQ NIAGMN_13485 0.24 +1.0 2,666,068 - yibQ NIAGMN_13485 0.24 -2.9 2,666,068 - yibQ NIAGMN_13485 0.24 +0.1 2,666,112 + yibQ NIAGMN_13485 0.28 -0.5 2,666,113 - yibQ NIAGMN_13485 0.28 +1.6 2,666,113 - yibQ NIAGMN_13485 0.28 +0.5 2,666,130 + yibQ NIAGMN_13485 0.30 -1.5 2,666,131 - yibQ NIAGMN_13485 0.30 -1.7 2,666,132 + yibQ NIAGMN_13485 0.30 +0.6 2,666,133 - yibQ NIAGMN_13485 0.31 +0.3 2,666,146 + yibQ NIAGMN_13485 0.32 -0.3 2,666,147 - yibQ NIAGMN_13485 0.32 -2.3 2,666,147 - yibQ NIAGMN_13485 0.32 -1.2 2,666,328 + yibQ NIAGMN_13485 0.51 +1.4 2,666,331 + yibQ NIAGMN_13485 0.51 -0.5 2,666,331 + yibQ NIAGMN_13485 0.51 -0.6 2,666,332 - yibQ NIAGMN_13485 0.51 -1.0 2,666,357 + yibQ NIAGMN_13485 0.54 +1.6 2,666,367 - yibQ NIAGMN_13485 0.55 -1.4 2,666,397 + yibQ NIAGMN_13485 0.58 -0.3 2,666,410 - yibQ NIAGMN_13485 0.59 -1.7 2,666,453 + yibQ NIAGMN_13485 0.64 -0.4 2,666,454 - yibQ NIAGMN_13485 0.64 -0.7 2,666,454 - yibQ NIAGMN_13485 0.64 -1.6 2,666,481 + yibQ NIAGMN_13485 0.67 -0.8 2,666,482 - yibQ NIAGMN_13485 0.67 -1.3 2,666,523 + yibQ NIAGMN_13485 0.71 -0.7 2,666,638 + yibQ NIAGMN_13485 0.83 -0.2 2,666,653 - yibQ NIAGMN_13485 0.85 +0.6 2,666,781 + +1.0 2,666,782 - -0.7 2,666,804 + -0.2 2,666,805 - +2.8 2,666,862 - -0.4 2,666,967 - envC NIAGMN_13490 0.13 -0.0 2,667,064 - envC NIAGMN_13490 0.21 +0.3 2,667,110 - envC NIAGMN_13490 0.24 -1.9 2,667,110 - envC NIAGMN_13490 0.24 +0.6 2,667,121 + envC NIAGMN_13490 0.25 -0.7 2,667,122 - envC NIAGMN_13490 0.25 +2.0 2,667,122 - envC NIAGMN_13490 0.25 +0.2 2,667,122 - envC NIAGMN_13490 0.25 -0.6 2,667,122 - envC NIAGMN_13490 0.25 +0.4 2,667,122 - envC NIAGMN_13490 0.25 -0.8 2,667,135 - envC NIAGMN_13490 0.26 +1.2 2,667,135 - envC NIAGMN_13490 0.26 +2.0 2,667,239 + envC NIAGMN_13490 0.35 -1.7 2,667,240 - envC NIAGMN_13490 0.35 -2.0 2,667,439 - envC NIAGMN_13490 0.50 +0.4 2,667,489 - envC NIAGMN_13490 0.54 -1.1 2,667,489 - envC NIAGMN_13490 0.54 -0.2 2,667,490 + envC NIAGMN_13490 0.55 +1.6 2,667,491 - envC NIAGMN_13490 0.55 +0.1 2,667,491 - envC NIAGMN_13490 0.55 +0.9 2,667,491 - envC NIAGMN_13490 0.55 +1.9 2,667,491 - envC NIAGMN_13490 0.55 +1.4 2,667,612 - envC NIAGMN_13490 0.64 -2.3 2,667,936 + envC NIAGMN_13490 0.90 +0.2 2,668,065 + +0.6 2,668,066 - +1.6 2,668,066 - -0.6 2,668,069 - +0.7 2,668,069 - +0.7 2,668,069 - +0.9 2,668,120 - +1.6 2,668,120 - -0.2 2,668,226 + -2.0 2,668,226 + -0.7 2,668,226 + -0.2 2,668,227 - +0.1 2,668,227 - +0.2 2,668,227 - +0.4 2,668,395 + gpmM NIAGMN_13495 0.19 -1.1 2,668,426 + gpmM NIAGMN_13495 0.21 -0.6 2,668,426 + gpmM NIAGMN_13495 0.21 +0.4 2,668,426 + gpmM NIAGMN_13495 0.21 +1.6 2,668,427 - gpmM NIAGMN_13495 0.21 -1.4 2,668,427 - gpmM NIAGMN_13495 0.21 +1.0 2,668,427 - gpmM NIAGMN_13495 0.21 -0.2 2,668,427 - gpmM NIAGMN_13495 0.21 -0.3 2,668,445 + gpmM NIAGMN_13495 0.23 +0.1 2,668,446 - gpmM NIAGMN_13495 0.23 -0.3 2,668,449 + gpmM NIAGMN_13495 0.23 -0.9 2,668,449 + gpmM NIAGMN_13495 0.23 +0.9 2,668,449 + gpmM NIAGMN_13495 0.23 -0.2 2,668,449 + gpmM NIAGMN_13495 0.23 -0.5 2,668,450 - gpmM NIAGMN_13495 0.23 -0.3 2,668,450 - gpmM NIAGMN_13495 0.23 +0.3 2,668,450 - gpmM NIAGMN_13495 0.23 -0.5 2,668,450 - gpmM NIAGMN_13495 0.23 +0.2 2,668,456 - gpmM NIAGMN_13495 0.23 -0.3 2,668,456 - gpmM NIAGMN_13495 0.23 +2.2 2,668,456 - gpmM NIAGMN_13495 0.23 -0.7 2,668,456 - gpmM NIAGMN_13495 0.23 -0.4 2,668,466 + gpmM NIAGMN_13495 0.24 -1.6 2,668,467 - gpmM NIAGMN_13495 0.24 +1.4 2,668,467 - gpmM NIAGMN_13495 0.24 -0.9 2,668,538 + gpmM NIAGMN_13495 0.29 -0.7 2,668,539 - gpmM NIAGMN_13495 0.29 +0.2 2,668,539 - gpmM NIAGMN_13495 0.29 -0.7 2,668,539 - gpmM NIAGMN_13495 0.29 +0.1 2,668,542 + gpmM NIAGMN_13495 0.29 +0.2 2,668,542 + gpmM NIAGMN_13495 0.29 -0.3 2,668,542 + gpmM NIAGMN_13495 0.29 -0.3 2,668,543 - gpmM NIAGMN_13495 0.29 +0.7 2,668,597 + gpmM NIAGMN_13495 0.32 -0.5 2,668,597 + gpmM NIAGMN_13495 0.32 -2.1 2,668,620 + gpmM NIAGMN_13495 0.34 -1.5 2,668,620 + gpmM NIAGMN_13495 0.34 +0.8 2,668,621 - gpmM NIAGMN_13495 0.34 -1.5 2,668,621 - gpmM NIAGMN_13495 0.34 +0.6 2,668,621 - gpmM NIAGMN_13495 0.34 -0.9 2,668,650 + gpmM NIAGMN_13495 0.36 +1.0 2,668,650 + gpmM NIAGMN_13495 0.36 -1.4 2,668,650 + gpmM NIAGMN_13495 0.36 -0.7 2,668,650 + gpmM NIAGMN_13495 0.36 -0.0 2,668,650 + gpmM NIAGMN_13495 0.36 -0.1 2,668,650 + gpmM NIAGMN_13495 0.36 -0.4 2,668,650 + gpmM NIAGMN_13495 0.36 -0.9 2,668,651 - gpmM NIAGMN_13495 0.36 -0.7 2,668,651 - gpmM NIAGMN_13495 0.36 +0.7 2,668,698 + gpmM NIAGMN_13495 0.39 +0.8 2,668,749 - gpmM NIAGMN_13495 0.42 +0.1 2,668,961 + gpmM NIAGMN_13495 0.56 -0.2 2,668,962 - gpmM NIAGMN_13495 0.56 -0.7 2,668,962 - gpmM NIAGMN_13495 0.56 +0.2 2,669,030 + gpmM NIAGMN_13495 0.60 -1.0 2,669,030 + gpmM NIAGMN_13495 0.60 -0.6 2,669,031 - gpmM NIAGMN_13495 0.61 -1.3
Or see this region's nucleotide sequence