Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt purH and purD are separated by 11 nucleotides purD and zraR overlap by 4 nucleotides
NIAGMN_11060: purH - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 2,185,388 to 2,186,977
purH
NIAGMN_11065: purD - Phosphoribosylamine--glycine ligase, at 2,186,989 to 2,188,278
purD
NIAGMN_11070: zraR - sigma-54-dependent response regulator transcription factor ZraR, at 2,188,275 to 2,189,600
zraR
Position (kb)
2186
2187
2188
2189 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2186.050 kb on + strand, within purH at 2186.100 kb on + strand, within purH at 2186.102 kb on + strand, within purH at 2186.102 kb on + strand, within purH at 2186.102 kb on + strand, within purH at 2186.102 kb on + strand, within purH at 2186.102 kb on + strand, within purH at 2186.102 kb on + strand, within purH at 2186.102 kb on + strand, within purH at 2186.102 kb on + strand, within purH at 2186.102 kb on + strand, within purH at 2186.102 kb on + strand, within purH at 2186.102 kb on + strand, within purH at 2186.102 kb on + strand, within purH at 2186.103 kb on - strand, within purH at 2186.103 kb on - strand, within purH at 2186.103 kb on - strand, within purH at 2186.103 kb on - strand, within purH at 2186.103 kb on - strand, within purH at 2186.103 kb on - strand, within purH at 2186.103 kb on - strand, within purH at 2186.103 kb on - strand, within purH at 2186.104 kb on + strand, within purH at 2186.104 kb on + strand, within purH at 2186.104 kb on + strand, within purH at 2186.105 kb on - strand, within purH at 2186.105 kb on - strand, within purH at 2186.106 kb on + strand, within purH at 2186.106 kb on + strand, within purH at 2186.106 kb on + strand, within purH at 2186.106 kb on + strand, within purH at 2186.106 kb on + strand, within purH at 2186.106 kb on + strand, within purH at 2186.106 kb on + strand, within purH at 2186.106 kb on + strand, within purH at 2186.107 kb on - strand, within purH at 2186.107 kb on - strand, within purH at 2186.107 kb on - strand, within purH at 2186.107 kb on - strand, within purH at 2186.159 kb on - strand, within purH at 2186.171 kb on + strand, within purH at 2186.171 kb on + strand, within purH at 2186.171 kb on + strand, within purH at 2186.171 kb on + strand, within purH at 2186.172 kb on - strand, within purH at 2186.172 kb on - strand, within purH at 2186.172 kb on - strand, within purH at 2186.172 kb on - strand, within purH at 2186.173 kb on + strand, within purH at 2186.173 kb on + strand, within purH at 2186.173 kb on + strand, within purH at 2186.173 kb on + strand, within purH at 2186.173 kb on + strand, within purH at 2186.173 kb on + strand, within purH at 2186.173 kb on + strand, within purH at 2186.174 kb on - strand, within purH at 2186.174 kb on - strand, within purH at 2186.174 kb on - strand, within purH at 2186.174 kb on - strand, within purH at 2186.174 kb on - strand, within purH at 2186.174 kb on - strand, within purH at 2186.297 kb on + strand, within purH at 2186.310 kb on - strand, within purH at 2186.417 kb on - strand, within purH at 2186.472 kb on + strand, within purH at 2186.472 kb on + strand, within purH at 2186.473 kb on - strand, within purH at 2186.681 kb on - strand, within purH at 2186.688 kb on - strand, within purH at 2186.688 kb on - strand, within purH at 2186.741 kb on + strand, within purH at 2186.742 kb on - strand, within purH at 2186.764 kb on + strand, within purH at 2186.764 kb on + strand, within purH at 2186.765 kb on - strand, within purH at 2186.875 kb on - strand at 2186.875 kb on - strand at 2186.875 kb on - strand at 2186.996 kb on + strand at 2186.996 kb on + strand at 2186.996 kb on + strand at 2186.996 kb on + strand at 2186.996 kb on + strand at 2186.996 kb on + strand at 2186.997 kb on - strand at 2186.997 kb on - strand at 2186.997 kb on - strand at 2186.997 kb on - strand at 2187.183 kb on - strand, within purD at 2187.188 kb on + strand, within purD at 2187.188 kb on + strand, within purD at 2187.189 kb on - strand, within purD at 2187.189 kb on - strand, within purD at 2187.189 kb on - strand, within purD at 2187.189 kb on - strand, within purD at 2187.310 kb on - strand, within purD at 2187.312 kb on + strand, within purD at 2187.312 kb on + strand, within purD at 2187.342 kb on + strand, within purD at 2187.371 kb on + strand, within purD at 2187.371 kb on + strand, within purD at 2187.388 kb on + strand, within purD at 2187.420 kb on + strand, within purD at 2187.421 kb on - strand, within purD at 2187.421 kb on - strand, within purD at 2187.498 kb on + strand, within purD at 2187.498 kb on + strand, within purD at 2187.498 kb on + strand, within purD at 2187.499 kb on - strand, within purD at 2187.738 kb on + strand, within purD at 2187.738 kb on + strand, within purD at 2187.738 kb on + strand, within purD at 2187.738 kb on + strand, within purD at 2187.739 kb on - strand, within purD at 2187.739 kb on - strand, within purD at 2187.739 kb on - strand, within purD at 2187.784 kb on + strand, within purD at 2187.784 kb on + strand, within purD at 2187.785 kb on - strand, within purD at 2187.785 kb on - strand, within purD at 2187.785 kb on - strand, within purD at 2187.800 kb on - strand, within purD at 2187.849 kb on + strand, within purD at 2187.849 kb on + strand, within purD at 2187.886 kb on - strand, within purD at 2187.886 kb on - strand, within purD at 2187.886 kb on - strand, within purD at 2187.944 kb on + strand, within purD at 2187.944 kb on + strand, within purD at 2187.944 kb on + strand, within purD at 2187.945 kb on - strand, within purD at 2187.945 kb on - strand, within purD at 2188.022 kb on - strand, within purD at 2188.121 kb on + strand, within purD at 2188.139 kb on + strand, within purD at 2188.164 kb on + strand at 2188.164 kb on + strand at 2188.165 kb on - strand at 2188.193 kb on - strand at 2188.199 kb on + strand at 2188.276 kb on + strand at 2188.276 kb on + strand at 2188.277 kb on - strand at 2188.317 kb on + strand at 2188.318 kb on - strand at 2188.318 kb on - strand at 2188.318 kb on - strand at 2188.318 kb on - strand at 2188.406 kb on + strand at 2188.436 kb on + strand, within zraR at 2188.436 kb on + strand, within zraR at 2188.437 kb on - strand, within zraR at 2188.472 kb on + strand, within zraR at 2188.473 kb on - strand, within zraR at 2188.473 kb on - strand, within zraR at 2188.473 kb on - strand, within zraR at 2188.474 kb on + strand, within zraR at 2188.474 kb on + strand, within zraR at 2188.475 kb on - strand, within zraR at 2188.529 kb on + strand, within zraR at 2188.602 kb on - strand, within zraR at 2188.602 kb on - strand, within zraR at 2188.647 kb on - strand, within zraR at 2188.674 kb on + strand, within zraR at 2188.674 kb on + strand, within zraR at 2188.675 kb on - strand, within zraR at 2188.675 kb on - strand, within zraR at 2188.675 kb on - strand, within zraR at 2188.675 kb on - strand, within zraR at 2188.705 kb on + strand, within zraR at 2188.706 kb on - strand, within zraR at 2188.790 kb on + strand, within zraR at 2188.791 kb on - strand, within zraR at 2188.947 kb on - strand, within zraR at 2189.020 kb on - strand, within zraR at 2189.036 kb on + strand, within zraR at 2189.037 kb on - strand, within zraR at 2189.079 kb on - strand, within zraR at 2189.222 kb on + strand, within zraR at 2189.222 kb on + strand, within zraR at 2189.222 kb on + strand, within zraR at 2189.223 kb on - strand, within zraR
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 2,186,050 + purH NIAGMN_11060 0.42 +2.0 2,186,100 + purH NIAGMN_11060 0.45 -1.6 2,186,102 + purH NIAGMN_11060 0.45 -0.8 2,186,102 + purH NIAGMN_11060 0.45 +0.2 2,186,102 + purH NIAGMN_11060 0.45 -0.6 2,186,102 + purH NIAGMN_11060 0.45 +0.2 2,186,102 + purH NIAGMN_11060 0.45 -1.9 2,186,102 + purH NIAGMN_11060 0.45 -1.0 2,186,102 + purH NIAGMN_11060 0.45 +1.0 2,186,102 + purH NIAGMN_11060 0.45 -0.3 2,186,102 + purH NIAGMN_11060 0.45 +0.3 2,186,102 + purH NIAGMN_11060 0.45 -1.3 2,186,102 + purH NIAGMN_11060 0.45 -2.1 2,186,102 + purH NIAGMN_11060 0.45 +0.2 2,186,103 - purH NIAGMN_11060 0.45 +0.3 2,186,103 - purH NIAGMN_11060 0.45 -0.5 2,186,103 - purH NIAGMN_11060 0.45 -0.4 2,186,103 - purH NIAGMN_11060 0.45 +0.7 2,186,103 - purH NIAGMN_11060 0.45 +0.3 2,186,103 - purH NIAGMN_11060 0.45 +1.0 2,186,103 - purH NIAGMN_11060 0.45 -0.6 2,186,103 - purH NIAGMN_11060 0.45 +1.4 2,186,104 + purH NIAGMN_11060 0.45 +0.1 2,186,104 + purH NIAGMN_11060 0.45 +0.0 2,186,104 + purH NIAGMN_11060 0.45 +0.5 2,186,105 - purH NIAGMN_11060 0.45 +2.9 2,186,105 - purH NIAGMN_11060 0.45 -0.6 2,186,106 + purH NIAGMN_11060 0.45 +0.5 2,186,106 + purH NIAGMN_11060 0.45 -3.2 2,186,106 + purH NIAGMN_11060 0.45 -0.8 2,186,106 + purH NIAGMN_11060 0.45 -0.9 2,186,106 + purH NIAGMN_11060 0.45 +0.6 2,186,106 + purH NIAGMN_11060 0.45 +0.1 2,186,106 + purH NIAGMN_11060 0.45 -1.1 2,186,106 + purH NIAGMN_11060 0.45 -1.0 2,186,107 - purH NIAGMN_11060 0.45 +1.1 2,186,107 - purH NIAGMN_11060 0.45 -1.8 2,186,107 - purH NIAGMN_11060 0.45 -0.9 2,186,107 - purH NIAGMN_11060 0.45 +0.0 2,186,159 - purH NIAGMN_11060 0.48 +0.4 2,186,171 + purH NIAGMN_11060 0.49 -1.0 2,186,171 + purH NIAGMN_11060 0.49 -0.7 2,186,171 + purH NIAGMN_11060 0.49 -2.8 2,186,171 + purH NIAGMN_11060 0.49 +1.3 2,186,172 - purH NIAGMN_11060 0.49 +1.3 2,186,172 - purH NIAGMN_11060 0.49 -0.9 2,186,172 - purH NIAGMN_11060 0.49 -0.5 2,186,172 - purH NIAGMN_11060 0.49 -0.3 2,186,173 + purH NIAGMN_11060 0.49 -0.3 2,186,173 + purH NIAGMN_11060 0.49 -1.6 2,186,173 + purH NIAGMN_11060 0.49 -0.3 2,186,173 + purH NIAGMN_11060 0.49 +0.5 2,186,173 + purH NIAGMN_11060 0.49 -1.9 2,186,173 + purH NIAGMN_11060 0.49 +0.3 2,186,173 + purH NIAGMN_11060 0.49 -0.1 2,186,174 - purH NIAGMN_11060 0.49 -0.6 2,186,174 - purH NIAGMN_11060 0.49 +1.6 2,186,174 - purH NIAGMN_11060 0.49 -0.6 2,186,174 - purH NIAGMN_11060 0.49 -0.9 2,186,174 - purH NIAGMN_11060 0.49 -0.5 2,186,174 - purH NIAGMN_11060 0.49 -1.9 2,186,297 + purH NIAGMN_11060 0.57 -0.9 2,186,310 - purH NIAGMN_11060 0.58 -0.6 2,186,417 - purH NIAGMN_11060 0.65 -0.7 2,186,472 + purH NIAGMN_11060 0.68 -0.7 2,186,472 + purH NIAGMN_11060 0.68 +0.5 2,186,473 - purH NIAGMN_11060 0.68 -1.8 2,186,681 - purH NIAGMN_11060 0.81 +0.8 2,186,688 - purH NIAGMN_11060 0.82 -0.6 2,186,688 - purH NIAGMN_11060 0.82 +0.2 2,186,741 + purH NIAGMN_11060 0.85 -1.5 2,186,742 - purH NIAGMN_11060 0.85 -1.3 2,186,764 + purH NIAGMN_11060 0.87 -0.5 2,186,764 + purH NIAGMN_11060 0.87 +2.3 2,186,765 - purH NIAGMN_11060 0.87 +0.6 2,186,875 - +0.7 2,186,875 - +0.3 2,186,875 - -0.5 2,186,996 + -0.4 2,186,996 + +1.7 2,186,996 + -0.0 2,186,996 + -1.3 2,186,996 + +0.2 2,186,996 + -1.3 2,186,997 - -0.2 2,186,997 - -2.8 2,186,997 - -1.9 2,186,997 - -1.2 2,187,183 - purD NIAGMN_11065 0.15 -0.8 2,187,188 + purD NIAGMN_11065 0.15 +0.2 2,187,188 + purD NIAGMN_11065 0.15 -0.5 2,187,189 - purD NIAGMN_11065 0.16 -0.4 2,187,189 - purD NIAGMN_11065 0.16 +1.7 2,187,189 - purD NIAGMN_11065 0.16 -2.1 2,187,189 - purD NIAGMN_11065 0.16 +1.1 2,187,310 - purD NIAGMN_11065 0.25 +1.3 2,187,312 + purD NIAGMN_11065 0.25 -0.8 2,187,312 + purD NIAGMN_11065 0.25 -1.6 2,187,342 + purD NIAGMN_11065 0.27 -2.5 2,187,371 + purD NIAGMN_11065 0.30 -1.0 2,187,371 + purD NIAGMN_11065 0.30 +0.6 2,187,388 + purD NIAGMN_11065 0.31 -0.1 2,187,420 + purD NIAGMN_11065 0.33 +1.3 2,187,421 - purD NIAGMN_11065 0.33 -0.2 2,187,421 - purD NIAGMN_11065 0.33 +0.5 2,187,498 + purD NIAGMN_11065 0.39 +0.6 2,187,498 + purD NIAGMN_11065 0.39 -0.1 2,187,498 + purD NIAGMN_11065 0.39 +0.4 2,187,499 - purD NIAGMN_11065 0.40 -1.5 2,187,738 + purD NIAGMN_11065 0.58 -0.4 2,187,738 + purD NIAGMN_11065 0.58 -0.6 2,187,738 + purD NIAGMN_11065 0.58 +0.7 2,187,738 + purD NIAGMN_11065 0.58 -0.3 2,187,739 - purD NIAGMN_11065 0.58 +0.4 2,187,739 - purD NIAGMN_11065 0.58 -0.3 2,187,739 - purD NIAGMN_11065 0.58 +0.1 2,187,784 + purD NIAGMN_11065 0.62 -0.9 2,187,784 + purD NIAGMN_11065 0.62 -0.4 2,187,785 - purD NIAGMN_11065 0.62 -2.9 2,187,785 - purD NIAGMN_11065 0.62 +0.8 2,187,785 - purD NIAGMN_11065 0.62 +1.1 2,187,800 - purD NIAGMN_11065 0.63 -0.4 2,187,849 + purD NIAGMN_11065 0.67 +2.1 2,187,849 + purD NIAGMN_11065 0.67 +1.7 2,187,886 - purD NIAGMN_11065 0.70 +0.7 2,187,886 - purD NIAGMN_11065 0.70 +0.5 2,187,886 - purD NIAGMN_11065 0.70 +2.7 2,187,944 + purD NIAGMN_11065 0.74 -0.9 2,187,944 + purD NIAGMN_11065 0.74 -0.2 2,187,944 + purD NIAGMN_11065 0.74 +0.7 2,187,945 - purD NIAGMN_11065 0.74 +0.1 2,187,945 - purD NIAGMN_11065 0.74 -0.4 2,188,022 - purD NIAGMN_11065 0.80 +0.8 2,188,121 + purD NIAGMN_11065 0.88 +0.7 2,188,139 + purD NIAGMN_11065 0.89 -2.2 2,188,164 + +0.7 2,188,164 + -1.8 2,188,165 - -0.3 2,188,193 - +0.5 2,188,199 + +0.1 2,188,276 + +0.2 2,188,276 + -0.6 2,188,277 - -0.1 2,188,317 + -0.7 2,188,318 - -1.5 2,188,318 - +0.9 2,188,318 - -1.0 2,188,318 - -0.2 2,188,406 + +2.4 2,188,436 + zraR NIAGMN_11070 0.12 +0.2 2,188,436 + zraR NIAGMN_11070 0.12 -1.5 2,188,437 - zraR NIAGMN_11070 0.12 -1.1 2,188,472 + zraR NIAGMN_11070 0.15 -0.1 2,188,473 - zraR NIAGMN_11070 0.15 +0.2 2,188,473 - zraR NIAGMN_11070 0.15 -1.0 2,188,473 - zraR NIAGMN_11070 0.15 +0.7 2,188,474 + zraR NIAGMN_11070 0.15 +0.3 2,188,474 + zraR NIAGMN_11070 0.15 -1.3 2,188,475 - zraR NIAGMN_11070 0.15 -0.5 2,188,529 + zraR NIAGMN_11070 0.19 +1.7 2,188,602 - zraR NIAGMN_11070 0.25 +0.3 2,188,602 - zraR NIAGMN_11070 0.25 +1.7 2,188,647 - zraR NIAGMN_11070 0.28 -0.3 2,188,674 + zraR NIAGMN_11070 0.30 +0.9 2,188,674 + zraR NIAGMN_11070 0.30 -0.3 2,188,675 - zraR NIAGMN_11070 0.30 +1.7 2,188,675 - zraR NIAGMN_11070 0.30 +0.1 2,188,675 - zraR NIAGMN_11070 0.30 -0.9 2,188,675 - zraR NIAGMN_11070 0.30 +1.1 2,188,705 + zraR NIAGMN_11070 0.32 -1.7 2,188,706 - zraR NIAGMN_11070 0.33 +0.7 2,188,790 + zraR NIAGMN_11070 0.39 +1.3 2,188,791 - zraR NIAGMN_11070 0.39 -0.2 2,188,947 - zraR NIAGMN_11070 0.51 -0.4 2,189,020 - zraR NIAGMN_11070 0.56 -1.2 2,189,036 + zraR NIAGMN_11070 0.57 -0.1 2,189,037 - zraR NIAGMN_11070 0.57 -0.3 2,189,079 - zraR NIAGMN_11070 0.61 -0.6 2,189,222 + zraR NIAGMN_11070 0.71 -1.6 2,189,222 + zraR NIAGMN_11070 0.71 -0.2 2,189,222 + zraR NIAGMN_11070 0.71 +0.1 2,189,223 - zraR NIAGMN_11070 0.71 +0.4
Or see this region's nucleotide sequence