Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt phnF and phnG are separated by 0 nucleotides phnG and phnH overlap by 4 nucleotides phnH and phnI overlap by 1 nucleotides
NIAGMN_10490: phnF - phosphonate metabolism transcriptional regulator PhnF, at 2,063,207 to 2,063,932
phnF
NIAGMN_10495: phnG - phosphonate C-P lyase system protein PhnG, at 2,063,933 to 2,064,385
phnG
NIAGMN_10500: phnH - phosphonate C-P lyase system protein PhnH, at 2,064,382 to 2,064,966
phnH
NIAGMN_10505: phnI - alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI, at 2,064,966 to 2,066,030
phnI
Position (kb)
2064
2065 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2063.400 kb on + strand, within phnF at 2063.640 kb on + strand, within phnF at 2063.651 kb on + strand, within phnF at 2063.652 kb on - strand, within phnF at 2063.815 kb on + strand, within phnF at 2063.816 kb on - strand, within phnF at 2063.880 kb on - strand at 2063.945 kb on - strand at 2063.945 kb on - strand at 2064.038 kb on + strand, within phnG at 2064.038 kb on + strand, within phnG at 2064.038 kb on + strand, within phnG at 2064.038 kb on + strand, within phnG at 2064.039 kb on - strand, within phnG at 2064.039 kb on - strand, within phnG at 2064.039 kb on - strand, within phnG at 2064.039 kb on - strand, within phnG at 2064.147 kb on + strand, within phnG at 2064.147 kb on + strand, within phnG at 2064.147 kb on + strand, within phnG at 2064.264 kb on + strand, within phnG at 2064.277 kb on + strand, within phnG at 2064.277 kb on + strand, within phnG at 2064.302 kb on - strand, within phnG at 2064.359 kb on - strand at 2064.402 kb on + strand at 2064.402 kb on + strand at 2064.403 kb on - strand at 2064.403 kb on - strand at 2064.403 kb on - strand at 2064.446 kb on + strand, within phnH at 2064.446 kb on + strand, within phnH at 2064.969 kb on + strand at 2064.969 kb on + strand at 2064.969 kb on + strand at 2064.969 kb on + strand at 2064.969 kb on + strand at 2064.969 kb on + strand at 2064.969 kb on + strand at 2064.970 kb on - strand at 2064.970 kb on - strand at 2064.970 kb on - strand at 2064.970 kb on - strand at 2064.970 kb on - strand at 2064.970 kb on - strand at 2064.970 kb on - strand at 2064.970 kb on - strand at 2065.089 kb on - strand, within phnI at 2065.089 kb on - strand, within phnI at 2065.089 kb on - strand, within phnI at 2065.277 kb on + strand, within phnI at 2065.278 kb on - strand, within phnI at 2065.293 kb on - strand, within phnI at 2065.293 kb on - strand, within phnI at 2065.298 kb on + strand, within phnI at 2065.298 kb on + strand, within phnI at 2065.330 kb on - strand, within phnI at 2065.330 kb on - strand, within phnI at 2065.335 kb on + strand, within phnI at 2065.335 kb on + strand, within phnI at 2065.335 kb on + strand, within phnI at 2065.336 kb on - strand, within phnI at 2065.519 kb on - strand, within phnI at 2065.573 kb on - strand, within phnI at 2065.573 kb on - strand, within phnI at 2065.651 kb on - strand, within phnI at 2065.965 kb on + strand at 2065.966 kb on - strand at 2065.966 kb on - strand at 2065.966 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 2,063,400 + phnF NIAGMN_10490 0.27 +0.6 2,063,640 + phnF NIAGMN_10490 0.60 -0.3 2,063,651 + phnF NIAGMN_10490 0.61 +0.8 2,063,652 - phnF NIAGMN_10490 0.61 -1.7 2,063,815 + phnF NIAGMN_10490 0.84 +0.1 2,063,816 - phnF NIAGMN_10490 0.84 +0.6 2,063,880 - +0.1 2,063,945 - -0.1 2,063,945 - +0.1 2,064,038 + phnG NIAGMN_10495 0.23 +1.0 2,064,038 + phnG NIAGMN_10495 0.23 -0.2 2,064,038 + phnG NIAGMN_10495 0.23 -0.2 2,064,038 + phnG NIAGMN_10495 0.23 -0.7 2,064,039 - phnG NIAGMN_10495 0.23 -1.9 2,064,039 - phnG NIAGMN_10495 0.23 -1.7 2,064,039 - phnG NIAGMN_10495 0.23 -0.5 2,064,039 - phnG NIAGMN_10495 0.23 -0.9 2,064,147 + phnG NIAGMN_10495 0.47 +0.1 2,064,147 + phnG NIAGMN_10495 0.47 +1.2 2,064,147 + phnG NIAGMN_10495 0.47 -2.5 2,064,264 + phnG NIAGMN_10495 0.73 -0.3 2,064,277 + phnG NIAGMN_10495 0.76 +0.0 2,064,277 + phnG NIAGMN_10495 0.76 -0.7 2,064,302 - phnG NIAGMN_10495 0.81 -0.6 2,064,359 - -0.1 2,064,402 + +0.6 2,064,402 + +1.2 2,064,403 - -0.2 2,064,403 - +0.3 2,064,403 - +0.9 2,064,446 + phnH NIAGMN_10500 0.11 -1.4 2,064,446 + phnH NIAGMN_10500 0.11 +0.4 2,064,969 + -2.0 2,064,969 + +1.0 2,064,969 + +0.9 2,064,969 + -0.8 2,064,969 + +1.7 2,064,969 + +0.6 2,064,969 + -1.7 2,064,970 - -0.1 2,064,970 - +0.5 2,064,970 - +0.2 2,064,970 - -0.4 2,064,970 - -0.3 2,064,970 - +0.3 2,064,970 - +2.4 2,064,970 - +1.7 2,065,089 - phnI NIAGMN_10505 0.12 -1.6 2,065,089 - phnI NIAGMN_10505 0.12 -0.3 2,065,089 - phnI NIAGMN_10505 0.12 -1.1 2,065,277 + phnI NIAGMN_10505 0.29 +0.9 2,065,278 - phnI NIAGMN_10505 0.29 -1.5 2,065,293 - phnI NIAGMN_10505 0.31 +1.7 2,065,293 - phnI NIAGMN_10505 0.31 +2.4 2,065,298 + phnI NIAGMN_10505 0.31 -1.5 2,065,298 + phnI NIAGMN_10505 0.31 +1.0 2,065,330 - phnI NIAGMN_10505 0.34 +0.0 2,065,330 - phnI NIAGMN_10505 0.34 -0.1 2,065,335 + phnI NIAGMN_10505 0.35 -1.5 2,065,335 + phnI NIAGMN_10505 0.35 +0.4 2,065,335 + phnI NIAGMN_10505 0.35 +0.7 2,065,336 - phnI NIAGMN_10505 0.35 -0.6 2,065,519 - phnI NIAGMN_10505 0.52 -0.3 2,065,573 - phnI NIAGMN_10505 0.57 -0.0 2,065,573 - phnI NIAGMN_10505 0.57 -0.3 2,065,651 - phnI NIAGMN_10505 0.64 +1.0 2,065,965 + -0.0 2,065,966 - -0.7 2,065,966 - +0.1 2,065,966 - -0.8
Or see this region's nucleotide sequence