Strain Fitness in Escherichia coli ECRC102 around NIAGMN_04900

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcydA and NIAGMN_04900 are separated by 805 nucleotidesNIAGMN_04900 and NIAGMN_04905 are separated by 81 nucleotides NIAGMN_04895: cydA - cytochrome ubiquinol oxidase subunit I, at 883,508 to 885,076 cydA NIAGMN_04900: NIAGMN_04900 - hypothetical protein, at 885,882 to 886,826 _04900 NIAGMN_04905: NIAGMN_04905 - hypothetical protein, at 886,908 to 887,330 _04905 Position (kb) 885 886 887Strain fitness (log2 ratio) -2 -1 0 1at 885.259 kb on - strandat 885.261 kb on - strandat 885.264 kb on - strandat 885.264 kb on - strandat 885.264 kb on - strandat 885.379 kb on - strandat 885.520 kb on - strandat 885.520 kb on - strandat 885.586 kb on - strandat 885.624 kb on + strandat 885.634 kb on - strandat 885.794 kb on + strandat 885.823 kb on + strandat 885.893 kb on + strandat 885.992 kb on - strand, within NIAGMN_04900at 886.792 kb on + strandat 886.956 kb on + strand, within NIAGMN_04905at 887.547 kb on + strandat 887.567 kb on + strandat 887.826 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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885,259 - -1.5
885,261 - +1.2
885,264 - -1.4
885,264 - +1.0
885,264 - -0.5
885,379 - +1.0
885,520 - -0.4
885,520 - -1.5
885,586 - -0.5
885,624 + +0.4
885,634 - -0.5
885,794 + -2.2
885,823 + -0.4
885,893 + +1.4
885,992 - NIAGMN_04900 0.12 -0.0
886,792 + +0.2
886,956 + NIAGMN_04905 0.11 +1.1
887,547 + +1.0
887,567 + -0.5
887,826 + -0.6

Or see this region's nucleotide sequence