Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_04110 and yiaG overlap by 11 nucleotides yiaG and dgcI are separated by 69 nucleotides dgcI and pdeI are separated by 7 nucleotides
NIAGMN_04110: NIAGMN_04110 - addiction module toxin RelE, at 739,268 to 739,654
_04110
NIAGMN_04115: yiaG - transcriptional regulator, at 739,644 to 739,973
yiaG
NIAGMN_04120: dgcI - putative diguanylate cyclase DgcI, at 740,043 to 741,371
dgcI
NIAGMN_04125: pdeI - putative cyclic di-GMP phosphodiesterase PdeI, at 741,379 to 743,727
pdeI
Position (kb) 740
741
742 Strain fitness (log2 ratio) -1
0
1 at 739.062 kb on - strand at 739.161 kb on + strand at 739.267 kb on + strand at 739.267 kb on + strand at 739.267 kb on + strand at 739.277 kb on + strand at 739.277 kb on + strand at 739.368 kb on + strand, within NIAGMN_04110 at 739.450 kb on + strand, within NIAGMN_04110 at 739.557 kb on - strand, within NIAGMN_04110 at 739.588 kb on + strand, within NIAGMN_04110 at 739.850 kb on + strand, within yiaG at 739.850 kb on + strand, within yiaG at 739.850 kb on + strand, within yiaG at 739.892 kb on + strand, within yiaG at 739.925 kb on + strand, within yiaG at 740.028 kb on - strand at 740.130 kb on - strand at 740.497 kb on + strand, within dgcI at 740.725 kb on + strand, within dgcI at 740.976 kb on - strand, within dgcI at 741.103 kb on + strand, within dgcI at 741.503 kb on - strand at 741.534 kb on - strand at 741.970 kb on - strand, within pdeI at 742.072 kb on - strand, within pdeI at 742.072 kb on - strand, within pdeI at 742.354 kb on - strand, within pdeI
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 739,062 - +0.7 739,161 + +1.0 739,267 + +0.3 739,267 + +0.4 739,267 + -1.3 739,277 + +1.2 739,277 + +0.4 739,368 + NIAGMN_04110 0.26 +1.4 739,450 + NIAGMN_04110 0.47 +0.8 739,557 - NIAGMN_04110 0.75 -1.4 739,588 + NIAGMN_04110 0.83 +1.0 739,850 + yiaG NIAGMN_04115 0.62 -1.0 739,850 + yiaG NIAGMN_04115 0.62 +1.7 739,850 + yiaG NIAGMN_04115 0.62 +1.0 739,892 + yiaG NIAGMN_04115 0.75 -0.7 739,925 + yiaG NIAGMN_04115 0.85 +1.0 740,028 - -0.7 740,130 - +1.1 740,497 + dgcI NIAGMN_04120 0.34 +1.7 740,725 + dgcI NIAGMN_04120 0.51 -0.0 740,976 - dgcI NIAGMN_04120 0.70 -0.0 741,103 + dgcI NIAGMN_04120 0.80 +0.9 741,503 - -0.8 741,534 - +0.2 741,970 - pdeI NIAGMN_04125 0.25 -0.0 742,072 - pdeI NIAGMN_04125 0.30 -0.1 742,072 - pdeI NIAGMN_04125 0.30 +1.0 742,354 - pdeI NIAGMN_04125 0.42 +0.4
Or see this region's nucleotide sequence