Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybjI and ybjH are separated by 91 nucleotides ybjH and mdfA are separated by 40 nucleotides mdfA and ybjG are separated by 284 nucleotides ybjG and deoR are separated by 57 nucleotides
NIAGMN_04060: ybjI - 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase, at 729,622 to 730,437
ybjI
NIAGMN_04065: ybjH - Uncharacterized protein YbjH, at 730,529 to 730,807
ybjH
NIAGMN_04070: mdfA - multidrug efflux MFS transporter MdfA, at 730,848 to 732,080
mdfA
NIAGMN_04075: ybjG - undecaprenyl-diphosphate phosphatase, at 732,365 to 732,961
ybjG
NIAGMN_04080: deoR - DNA-binding transcriptional repressor DeoR, at 733,019 to 733,777
deoR
Position (kb) 730
731
732
733 Strain fitness (log2 ratio) -2
-1
0
1
2 at 729.891 kb on + strand, within ybjI at 730.009 kb on + strand, within ybjI at 730.010 kb on - strand, within ybjI at 730.046 kb on + strand, within ybjI at 730.137 kb on + strand, within ybjI at 730.137 kb on + strand, within ybjI at 730.235 kb on + strand, within ybjI at 730.236 kb on - strand, within ybjI at 730.278 kb on + strand, within ybjI at 730.483 kb on + strand at 730.542 kb on + strand at 730.542 kb on + strand at 730.737 kb on - strand, within ybjH at 730.758 kb on + strand, within ybjH at 730.759 kb on - strand, within ybjH at 730.759 kb on - strand, within ybjH at 730.805 kb on + strand at 730.878 kb on - strand at 731.114 kb on - strand, within mdfA at 731.117 kb on + strand, within mdfA at 731.196 kb on - strand, within mdfA at 731.444 kb on + strand, within mdfA at 731.445 kb on - strand, within mdfA at 731.447 kb on - strand, within mdfA at 731.447 kb on - strand, within mdfA at 731.447 kb on - strand, within mdfA at 731.447 kb on - strand, within mdfA at 731.702 kb on - strand, within mdfA at 731.782 kb on - strand, within mdfA at 731.782 kb on - strand, within mdfA at 731.784 kb on + strand, within mdfA at 731.847 kb on - strand, within mdfA at 731.847 kb on - strand, within mdfA at 731.877 kb on + strand, within mdfA at 731.878 kb on - strand, within mdfA at 731.900 kb on - strand, within mdfA at 731.916 kb on - strand, within mdfA at 731.916 kb on - strand, within mdfA at 731.942 kb on - strand, within mdfA at 731.964 kb on - strand at 731.992 kb on + strand at 731.993 kb on - strand at 731.993 kb on - strand at 732.067 kb on - strand at 732.098 kb on - strand at 732.179 kb on - strand at 732.179 kb on - strand at 732.193 kb on - strand at 732.193 kb on - strand at 732.193 kb on - strand at 732.194 kb on + strand at 732.195 kb on - strand at 732.195 kb on - strand at 732.195 kb on - strand at 732.199 kb on - strand at 732.221 kb on - strand at 732.226 kb on - strand at 732.296 kb on + strand at 732.309 kb on - strand at 732.328 kb on + strand at 732.364 kb on + strand at 732.365 kb on - strand at 732.390 kb on + strand at 732.451 kb on + strand, within ybjG at 732.495 kb on + strand, within ybjG at 732.537 kb on + strand, within ybjG at 732.634 kb on + strand, within ybjG at 732.714 kb on + strand, within ybjG at 732.883 kb on + strand, within ybjG at 732.883 kb on + strand, within ybjG at 732.981 kb on + strand at 732.981 kb on + strand at 733.001 kb on + strand at 733.001 kb on + strand at 733.005 kb on + strand at 733.065 kb on + strand at 733.078 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 729,891 + ybjI NIAGMN_04060 0.33 +1.0 730,009 + ybjI NIAGMN_04060 0.47 +1.0 730,010 - ybjI NIAGMN_04060 0.48 -2.3 730,046 + ybjI NIAGMN_04060 0.52 +0.2 730,137 + ybjI NIAGMN_04060 0.63 -0.2 730,137 + ybjI NIAGMN_04060 0.63 -1.1 730,235 + ybjI NIAGMN_04060 0.75 +2.0 730,236 - ybjI NIAGMN_04060 0.75 +2.6 730,278 + ybjI NIAGMN_04060 0.80 -0.3 730,483 + -0.6 730,542 + -1.6 730,542 + +0.8 730,737 - ybjH NIAGMN_04065 0.75 -0.0 730,758 + ybjH NIAGMN_04065 0.82 +0.2 730,759 - ybjH NIAGMN_04065 0.82 -0.3 730,759 - ybjH NIAGMN_04065 0.82 +1.4 730,805 + +2.0 730,878 - +0.6 731,114 - mdfA NIAGMN_04070 0.22 +0.8 731,117 + mdfA NIAGMN_04070 0.22 -0.5 731,196 - mdfA NIAGMN_04070 0.28 -0.0 731,444 + mdfA NIAGMN_04070 0.48 +0.0 731,445 - mdfA NIAGMN_04070 0.48 -0.1 731,447 - mdfA NIAGMN_04070 0.49 -2.1 731,447 - mdfA NIAGMN_04070 0.49 -0.1 731,447 - mdfA NIAGMN_04070 0.49 -1.0 731,447 - mdfA NIAGMN_04070 0.49 -1.1 731,702 - mdfA NIAGMN_04070 0.69 +0.4 731,782 - mdfA NIAGMN_04070 0.76 +2.0 731,782 - mdfA NIAGMN_04070 0.76 -0.6 731,784 + mdfA NIAGMN_04070 0.76 -0.8 731,847 - mdfA NIAGMN_04070 0.81 -0.1 731,847 - mdfA NIAGMN_04070 0.81 -1.3 731,877 + mdfA NIAGMN_04070 0.83 +1.3 731,878 - mdfA NIAGMN_04070 0.84 +1.0 731,900 - mdfA NIAGMN_04070 0.85 -0.5 731,916 - mdfA NIAGMN_04070 0.87 +0.6 731,916 - mdfA NIAGMN_04070 0.87 -0.1 731,942 - mdfA NIAGMN_04070 0.89 +0.5 731,964 - -0.3 731,992 + +0.4 731,993 - +0.7 731,993 - -1.0 732,067 - +0.4 732,098 - +0.1 732,179 - -0.0 732,179 - +2.0 732,193 - +1.4 732,193 - -0.0 732,193 - -1.0 732,194 + +0.5 732,195 - -1.0 732,195 - -1.2 732,195 - -1.6 732,199 - -1.2 732,221 - +2.0 732,226 - +2.2 732,296 + +0.1 732,309 - -0.8 732,328 + +0.4 732,364 + +1.0 732,365 - +0.3 732,390 + -0.2 732,451 + ybjG NIAGMN_04075 0.14 -1.1 732,495 + ybjG NIAGMN_04075 0.22 -0.0 732,537 + ybjG NIAGMN_04075 0.29 -1.3 732,634 + ybjG NIAGMN_04075 0.45 -0.0 732,714 + ybjG NIAGMN_04075 0.58 -1.2 732,883 + ybjG NIAGMN_04075 0.87 +0.7 732,883 + ybjG NIAGMN_04075 0.87 -0.5 732,981 + -0.1 732,981 + -1.3 733,001 + +0.9 733,001 + +0.1 733,005 + -0.0 733,065 + +1.0 733,078 + +0.7
Or see this region's nucleotide sequence