Experiment: RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_03370 and NIAGMN_03375 are separated by 339 nucleotides NIAGMN_03375 and NIAGMN_03380 overlap by 4 nucleotides NIAGMN_03380 and NIAGMN_03385 overlap by 4 nucleotides
NIAGMN_03370: NIAGMN_03370 - DUF945 domain-containing protein, at 601,915 to 602,733
_03370
NIAGMN_03375: NIAGMN_03375 - phospholipase, at 603,073 to 604,143
_03375
NIAGMN_03380: NIAGMN_03380 - chemotaxis protein, at 604,140 to 605,045
_03380
NIAGMN_03385: NIAGMN_03385 - dGTPase, at 605,042 to 607,426
_03385
Position (kb) 603
604
605 Strain fitness (log2 ratio) -2
-1
0
1
2 at 602.365 kb on - strand, within NIAGMN_03370 at 602.365 kb on - strand, within NIAGMN_03370 at 602.399 kb on + strand, within NIAGMN_03370 at 602.597 kb on + strand, within NIAGMN_03370 at 602.597 kb on + strand, within NIAGMN_03370 at 602.598 kb on - strand, within NIAGMN_03370 at 602.603 kb on + strand, within NIAGMN_03370 at 602.650 kb on + strand, within NIAGMN_03370 at 602.746 kb on - strand at 602.762 kb on + strand at 602.826 kb on - strand at 602.859 kb on + strand at 602.860 kb on - strand at 602.978 kb on - strand at 602.993 kb on - strand at 602.993 kb on - strand at 602.996 kb on - strand at 602.998 kb on - strand at 602.998 kb on - strand at 602.998 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RB68 remove 602,365 - NIAGMN_03370 0.55 -1.0 602,365 - NIAGMN_03370 0.55 +2.4 602,399 + NIAGMN_03370 0.59 -0.6 602,597 + NIAGMN_03370 0.83 +2.0 602,597 + NIAGMN_03370 0.83 -1.0 602,598 - NIAGMN_03370 0.83 +1.0 602,603 + NIAGMN_03370 0.84 -0.6 602,650 + NIAGMN_03370 0.90 +0.0 602,746 - -0.4 602,762 + +2.6 602,826 - -2.2 602,859 + +0.7 602,860 - +0.3 602,978 - +1.3 602,993 - -1.6 602,993 - +0.4 602,996 - +1.4 602,998 - +2.4 602,998 - +0.0 602,998 - +1.2
Or see this region's nucleotide sequence