Strain Fitness in Escherichia coli ECRC102 around NIAGMN_03200

Experiment: RB68

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrpsA and cmk are separated by 110 nucleotidescmk and ycaL are separated by 172 nucleotidesycaL and aroA are separated by 168 nucleotides NIAGMN_03190: rpsA - 30S ribosomal protein S1, at 561,481 to 563,154 rpsA NIAGMN_03195: cmk - (d)CMP kinase, at 563,265 to 563,948 cmk NIAGMN_03200: ycaL - metallopeptidase YcaL, at 564,121 to 564,885 ycaL NIAGMN_03205: aroA - 3-phosphoshikimate 1-carboxyvinyltransferase, at 565,054 to 566,337 aroA Position (kb) 564 565Strain fitness (log2 ratio) -2 -1 0 1 2 3at 563.996 kb on - strandat 563.998 kb on - strandat 563.998 kb on - strandat 564.067 kb on + strandat 564.078 kb on + strandat 564.123 kb on - strandat 564.127 kb on - strandat 564.323 kb on + strand, within ycaLat 564.539 kb on + strand, within ycaLat 564.592 kb on - strand, within ycaLat 564.592 kb on - strand, within ycaLat 564.593 kb on + strand, within ycaLat 564.622 kb on - strand, within ycaLat 564.768 kb on + strand, within ycaLat 564.903 kb on + strandat 565.038 kb on - strandat 565.048 kb on - strandat 565.092 kb on - strandat 565.114 kb on - strandat 565.144 kb on - strandat 565.194 kb on - strand, within aroAat 565.194 kb on - strand, within aroAat 565.194 kb on - strand, within aroAat 565.335 kb on - strand, within aroAat 565.461 kb on - strand, within aroAat 565.531 kb on - strand, within aroAat 565.537 kb on - strand, within aroAat 565.559 kb on - strand, within aroAat 565.629 kb on - strand, within aroAat 565.633 kb on - strand, within aroAat 565.664 kb on - strand, within aroAat 565.739 kb on + strand, within aroA

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RB68
remove
563,996 - +1.0
563,998 - +0.6
563,998 - -0.1
564,067 + -1.7
564,078 + +0.0
564,123 - -0.0
564,127 - +1.0
564,323 + ycaL NIAGMN_03200 0.26 +0.6
564,539 + ycaL NIAGMN_03200 0.55 -1.4
564,592 - ycaL NIAGMN_03200 0.62 -2.1
564,592 - ycaL NIAGMN_03200 0.62 -2.4
564,593 + ycaL NIAGMN_03200 0.62 -0.3
564,622 - ycaL NIAGMN_03200 0.65 +1.0
564,768 + ycaL NIAGMN_03200 0.85 -1.7
564,903 + +1.0
565,038 - +0.3
565,048 - +1.2
565,092 - -0.1
565,114 - -1.2
565,144 - +1.0
565,194 - aroA NIAGMN_03205 0.11 +3.3
565,194 - aroA NIAGMN_03205 0.11 +2.5
565,194 - aroA NIAGMN_03205 0.11 -1.3
565,335 - aroA NIAGMN_03205 0.22 -2.7
565,461 - aroA NIAGMN_03205 0.32 +2.0
565,531 - aroA NIAGMN_03205 0.37 -0.4
565,537 - aroA NIAGMN_03205 0.38 -2.0
565,559 - aroA NIAGMN_03205 0.39 +0.4
565,629 - aroA NIAGMN_03205 0.45 +2.0
565,633 - aroA NIAGMN_03205 0.45 +1.4
565,664 - aroA NIAGMN_03205 0.48 +2.4
565,739 + aroA NIAGMN_03205 0.53 +1.2

Or see this region's nucleotide sequence