Strain Fitness in Escherichia coli ECRC102 around NIAGMN_03100

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntasnS and ompF are separated by 602 nucleotidesompF and aspC are separated by 184 nucleotides NIAGMN_03095: asnS - asparagine--tRNA ligase, at 536,336 to 537,736 asnS NIAGMN_03100: ompF - porin OmpF, at 538,339 to 539,427 ompF NIAGMN_03105: aspC - aspartate transaminase, at 539,612 to 540,802 aspC Position (kb) 538 539 540Strain fitness (log2 ratio) -1 0 1 2 3 4at 537.794 kb on - strandat 537.805 kb on - strandat 538.101 kb on - strandat 538.236 kb on + strandat 538.383 kb on - strandat 538.385 kb on + strandat 538.468 kb on + strand, within ompFat 538.522 kb on + strand, within ompFat 538.539 kb on + strand, within ompFat 538.591 kb on + strand, within ompFat 538.593 kb on + strand, within ompFat 538.605 kb on + strand, within ompFat 538.672 kb on + strand, within ompFat 538.708 kb on + strand, within ompFat 538.708 kb on + strand, within ompFat 538.735 kb on + strand, within ompFat 538.735 kb on + strand, within ompFat 538.735 kb on + strand, within ompFat 538.743 kb on + strand, within ompFat 538.767 kb on + strand, within ompFat 538.816 kb on - strand, within ompFat 538.824 kb on + strand, within ompFat 538.935 kb on + strand, within ompFat 538.935 kb on + strand, within ompFat 538.935 kb on + strand, within ompFat 538.936 kb on - strand, within ompFat 538.948 kb on + strand, within ompFat 538.975 kb on + strand, within ompFat 539.062 kb on + strand, within ompFat 539.080 kb on + strand, within ompFat 539.136 kb on + strand, within ompFat 539.191 kb on + strand, within ompFat 539.252 kb on + strand, within ompFat 539.285 kb on - strand, within ompFat 539.332 kb on + strandat 539.332 kb on + strandat 539.332 kb on + strandat 539.332 kb on + strandat 539.341 kb on + strandat 539.341 kb on + strandat 539.341 kb on + strandat 539.382 kb on - strandat 539.425 kb on + strandat 539.425 kb on + strandat 539.425 kb on + strandat 539.444 kb on + strandat 539.539 kb on + strandat 540.056 kb on + strand, within aspCat 540.316 kb on + strand, within aspCat 540.317 kb on - strand, within aspC

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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537,794 - -1.3
537,805 - -0.7
538,101 - -1.3
538,236 + +0.0
538,383 - +0.9
538,385 + +1.4
538,468 + ompF NIAGMN_03100 0.12 +0.2
538,522 + ompF NIAGMN_03100 0.17 +4.6
538,539 + ompF NIAGMN_03100 0.18 +2.8
538,591 + ompF NIAGMN_03100 0.23 -0.9
538,593 + ompF NIAGMN_03100 0.23 +1.5
538,605 + ompF NIAGMN_03100 0.24 +1.5
538,672 + ompF NIAGMN_03100 0.31 +0.0
538,708 + ompF NIAGMN_03100 0.34 -0.6
538,708 + ompF NIAGMN_03100 0.34 +3.4
538,735 + ompF NIAGMN_03100 0.36 +1.1
538,735 + ompF NIAGMN_03100 0.36 +2.0
538,735 + ompF NIAGMN_03100 0.36 +0.4
538,743 + ompF NIAGMN_03100 0.37 -0.3
538,767 + ompF NIAGMN_03100 0.39 +1.6
538,816 - ompF NIAGMN_03100 0.44 +0.7
538,824 + ompF NIAGMN_03100 0.45 +0.7
538,935 + ompF NIAGMN_03100 0.55 +2.0
538,935 + ompF NIAGMN_03100 0.55 +0.9
538,935 + ompF NIAGMN_03100 0.55 +2.6
538,936 - ompF NIAGMN_03100 0.55 +2.2
538,948 + ompF NIAGMN_03100 0.56 +0.8
538,975 + ompF NIAGMN_03100 0.58 +2.0
539,062 + ompF NIAGMN_03100 0.66 +3.6
539,080 + ompF NIAGMN_03100 0.68 +1.4
539,136 + ompF NIAGMN_03100 0.73 +1.0
539,191 + ompF NIAGMN_03100 0.78 +1.0
539,252 + ompF NIAGMN_03100 0.84 +2.2
539,285 - ompF NIAGMN_03100 0.87 +1.4
539,332 + +2.6
539,332 + +1.0
539,332 + +3.0
539,332 + +2.7
539,341 + +1.5
539,341 + +2.0
539,341 + +1.3
539,382 - +2.0
539,425 + +0.2
539,425 + +1.3
539,425 + -1.6
539,444 + +0.4
539,539 + +1.6
540,056 + aspC NIAGMN_03105 0.37 +0.9
540,316 + aspC NIAGMN_03105 0.59 -0.2
540,317 - aspC NIAGMN_03105 0.59 +0.0

Or see this region's nucleotide sequence