Strain Fitness in Escherichia coli ECRC102 around NIAGMN_02900

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyccA and tusE are separated by 90 nucleotidestusE and yccX overlap by 4 nucleotidesyccX and rlmI are separated by 109 nucleotides NIAGMN_02890: yccA - FtsH protease modulator YccA, at 493,903 to 494,562 yccA NIAGMN_02895: tusE - sulfurtransferase TusE, at 494,653 to 494,982 tusE NIAGMN_02900: yccX - acylphosphatase, at 494,979 to 495,257 yccX NIAGMN_02905: rlmI - 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI, at 495,367 to 496,542 rlmI Position (kb) 494 495 496Strain fitness (log2 ratio) -1 0 1 2 3at 494.081 kb on - strand, within yccAat 494.104 kb on - strand, within yccAat 494.191 kb on + strand, within yccAat 494.192 kb on - strand, within yccAat 494.475 kb on + strand, within yccAat 494.497 kb on + strandat 494.645 kb on + strandat 495.208 kb on - strand, within yccXat 495.352 kb on - strandat 495.366 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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494,081 - yccA NIAGMN_02890 0.27 -0.3
494,104 - yccA NIAGMN_02890 0.30 +1.3
494,191 + yccA NIAGMN_02890 0.44 +1.7
494,192 - yccA NIAGMN_02890 0.44 +0.0
494,475 + yccA NIAGMN_02890 0.87 -0.7
494,497 + +3.0
494,645 + +3.0
495,208 - yccX NIAGMN_02900 0.82 +0.0
495,352 - +0.7
495,366 - +2.0

Or see this region's nucleotide sequence