Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01955

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmotA and flhC are separated by 126 nucleotidesflhC and flhD are separated by 2 nucleotides NIAGMN_01950: motA - flagellar motor stator protein MotA, at 353,762 to 354,649 motA NIAGMN_01955: flhC - flagellar transcriptional regulator FlhC, at 354,776 to 355,354 flhC NIAGMN_01960: flhD - flagellar transcriptional regulator FlhD, at 355,357 to 355,707 flhD Position (kb) 354 355 356Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 354.250 kb on + strand, within motAat 354.424 kb on + strand, within motAat 354.426 kb on + strand, within motAat 354.565 kb on - strandat 354.631 kb on - strandat 354.636 kb on - strandat 354.636 kb on - strandat 354.644 kb on - strandat 354.644 kb on - strandat 354.821 kb on - strandat 354.844 kb on + strand, within flhCat 354.963 kb on - strand, within flhCat 355.051 kb on - strand, within flhCat 355.087 kb on + strand, within flhCat 355.232 kb on + strand, within flhCat 355.396 kb on - strand, within flhDat 355.483 kb on - strand, within flhDat 355.594 kb on + strand, within flhDat 355.651 kb on + strand, within flhDat 355.655 kb on - strand, within flhDat 355.677 kb on - strandat 355.702 kb on - strandat 355.806 kb on - strandat 355.865 kb on - strandat 355.885 kb on - strandat 355.885 kb on - strandat 355.937 kb on - strandat 355.937 kb on - strandat 355.937 kb on - strandat 356.226 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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354,250 + motA NIAGMN_01950 0.55 +3.0
354,424 + motA NIAGMN_01950 0.75 -1.0
354,426 + motA NIAGMN_01950 0.75 -1.1
354,565 - +1.0
354,631 - +2.0
354,636 - +4.5
354,636 - -0.0
354,644 - -1.9
354,644 - +2.0
354,821 - +0.6
354,844 + flhC NIAGMN_01955 0.12 +0.6
354,963 - flhC NIAGMN_01955 0.32 +1.2
355,051 - flhC NIAGMN_01955 0.47 +0.4
355,087 + flhC NIAGMN_01955 0.54 -0.5
355,232 + flhC NIAGMN_01955 0.79 -0.4
355,396 - flhD NIAGMN_01960 0.11 +2.0
355,483 - flhD NIAGMN_01960 0.36 +0.2
355,594 + flhD NIAGMN_01960 0.68 +0.5
355,651 + flhD NIAGMN_01960 0.84 +0.2
355,655 - flhD NIAGMN_01960 0.85 +0.5
355,677 - +2.0
355,702 - +0.4
355,806 - +1.2
355,865 - -2.0
355,885 - +0.5
355,885 - +2.0
355,937 - -0.0
355,937 - +3.0
355,937 - +0.4
356,226 - -0.6

Or see this region's nucleotide sequence