Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01350

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeaD and yeaE are separated by 50 nucleotidesyeaE and mipA are separated by 89 nucleotidesmipA and yeaG are separated by 435 nucleotides NIAGMN_01340: yeaD - Putative glucose-6-phosphate 1-epimerase, at 241,034 to 241,918 yeaD NIAGMN_01345: yeaE - methylglyoxal reductase YeaE, at 241,969 to 242,823 yeaE NIAGMN_01350: mipA - scaffolding protein MipA, at 242,913 to 243,659 mipA NIAGMN_01355: yeaG - protein kinase YeaG, at 244,095 to 246,029 yeaG Position (kb) 242 243 244Strain fitness (log2 ratio) -1 0 1 2 3 4at 242.488 kb on + strand, within yeaEat 242.755 kb on - strandat 242.756 kb on + strandat 242.757 kb on - strandat 242.924 kb on - strandat 243.068 kb on - strand, within mipAat 243.095 kb on - strand, within mipAat 243.140 kb on - strand, within mipAat 243.140 kb on - strand, within mipAat 243.140 kb on - strand, within mipAat 243.215 kb on - strand, within mipAat 243.220 kb on + strand, within mipAat 243.345 kb on - strand, within mipAat 243.420 kb on - strand, within mipAat 243.455 kb on - strand, within mipAat 243.455 kb on - strand, within mipAat 243.455 kb on - strand, within mipAat 243.455 kb on - strand, within mipAat 243.458 kb on - strand, within mipAat 243.458 kb on - strand, within mipAat 243.468 kb on + strand, within mipAat 243.469 kb on - strand, within mipAat 243.545 kb on - strand, within mipAat 243.545 kb on - strand, within mipAat 243.714 kb on - strandat 243.755 kb on - strandat 243.763 kb on - strandat 243.833 kb on + strandat 243.834 kb on - strandat 243.839 kb on - strandat 243.941 kb on + strandat 244.039 kb on + strandat 244.091 kb on + strandat 244.366 kb on - strand, within yeaG

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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242,488 + yeaE NIAGMN_01345 0.61 -0.0
242,755 - +0.4
242,756 + +1.1
242,757 - +1.0
242,924 - +2.0
243,068 - mipA NIAGMN_01350 0.21 -0.4
243,095 - mipA NIAGMN_01350 0.24 -1.5
243,140 - mipA NIAGMN_01350 0.30 -0.6
243,140 - mipA NIAGMN_01350 0.30 +4.1
243,140 - mipA NIAGMN_01350 0.30 +1.0
243,215 - mipA NIAGMN_01350 0.40 -0.4
243,220 + mipA NIAGMN_01350 0.41 +2.0
243,345 - mipA NIAGMN_01350 0.58 -0.3
243,420 - mipA NIAGMN_01350 0.68 -0.4
243,455 - mipA NIAGMN_01350 0.73 +1.2
243,455 - mipA NIAGMN_01350 0.73 +3.6
243,455 - mipA NIAGMN_01350 0.73 +1.0
243,455 - mipA NIAGMN_01350 0.73 +0.2
243,458 - mipA NIAGMN_01350 0.73 -1.0
243,458 - mipA NIAGMN_01350 0.73 -1.2
243,468 + mipA NIAGMN_01350 0.74 -0.4
243,469 - mipA NIAGMN_01350 0.74 +2.8
243,545 - mipA NIAGMN_01350 0.85 +1.0
243,545 - mipA NIAGMN_01350 0.85 -0.2
243,714 - +0.4
243,755 - +0.4
243,763 - +0.4
243,833 + -0.0
243,834 - +0.4
243,839 - +0.2
243,941 + -0.1
244,039 + +0.0
244,091 + -0.3
244,366 - yeaG NIAGMN_01355 0.14 -0.5

Or see this region's nucleotide sequence