Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00905

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydiR and ydiS are separated by 55 nucleotidesydiS and ydiT overlap by 4 nucleotidesydiT and fadK are separated by 56 nucleotides NIAGMN_00900: ydiR - electron transfer flavoprotein subunit alpha, at 155,686 to 156,624 ydiR NIAGMN_00905: ydiS - putative electron transfer flavoprotein-quinone oxidoreductase YdiS, at 156,680 to 157,969 ydiS NIAGMN_00910: ydiT - Ferredoxin-like protein YdiT, at 157,966 to 158,259 ydiT NIAGMN_00915: fadK - medium-chain fatty-acid--CoA ligase, at 158,316 to 159,962 fadK Position (kb) 156 157 158Strain fitness (log2 ratio) -1 0 1 2 3at 155.779 kb on + strandat 155.936 kb on + strand, within ydiRat 156.064 kb on + strand, within ydiRat 156.065 kb on - strand, within ydiRat 156.156 kb on + strand, within ydiRat 156.190 kb on + strand, within ydiRat 156.190 kb on + strand, within ydiRat 156.409 kb on + strand, within ydiRat 156.412 kb on - strand, within ydiRat 156.525 kb on + strand, within ydiRat 156.988 kb on + strand, within ydiSat 157.279 kb on + strand, within ydiSat 157.516 kb on + strand, within ydiSat 157.868 kb on - strandat 158.113 kb on + strand, within ydiTat 158.467 kb on - strandat 158.673 kb on - strand, within fadKat 158.767 kb on + strand, within fadK

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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155,779 + -1.0
155,936 + ydiR NIAGMN_00900 0.27 +1.9
156,064 + ydiR NIAGMN_00900 0.40 -0.4
156,065 - ydiR NIAGMN_00900 0.40 -0.9
156,156 + ydiR NIAGMN_00900 0.50 +0.9
156,190 + ydiR NIAGMN_00900 0.54 -0.9
156,190 + ydiR NIAGMN_00900 0.54 +1.9
156,409 + ydiR NIAGMN_00900 0.77 +2.9
156,412 - ydiR NIAGMN_00900 0.77 +0.5
156,525 + ydiR NIAGMN_00900 0.89 -0.1
156,988 + ydiS NIAGMN_00905 0.24 -1.0
157,279 + ydiS NIAGMN_00905 0.46 +0.6
157,516 + ydiS NIAGMN_00905 0.65 +0.5
157,868 - +0.9
158,113 + ydiT NIAGMN_00910 0.50 -1.2
158,467 - -0.2
158,673 - fadK NIAGMN_00915 0.22 -0.4
158,767 + fadK NIAGMN_00915 0.27 -1.2

Or see this region's nucleotide sequence