Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00715

Experiment: RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydhQ and Val_trna are separated by 307 nucleotidesVal_trna and Val_trna are separated by 4 nucleotidesVal_trna and ydhR are separated by 107 nucleotidesydhR and ydhS are separated by 125 nucleotides NIAGMN_00710: ydhQ - Uncharacterized protein YdhQ, at 120,153 to 121,409 ydhQ NIAGMN_00715: Val_trna - tRNA-Val(gac), at 121,717 to 121,793 _trna NIAGMN_00720: Val_trna - tRNA-Val(gac), at 121,798 to 121,874 _trna NIAGMN_00730: ydhR - monooxygenase, at 121,982 to 122,287 ydhR NIAGMN_00735: ydhS - FAD-NAD(P)-binding protein, at 122,413 to 124,017 ydhS Position (kb) 121 122Strain fitness (log2 ratio) -2 -1 0 1 2 3at 120.792 kb on - strand, within ydhQat 121.167 kb on - strand, within ydhQat 121.326 kb on - strandat 121.415 kb on - strandat 121.415 kb on - strandat 121.452 kb on - strandat 121.452 kb on - strandat 121.452 kb on - strandat 121.535 kb on - strandat 121.554 kb on - strandat 121.708 kb on + strandat 121.708 kb on + strandat 121.708 kb on + strandat 121.724 kb on + strandat 121.724 kb on + strandat 121.724 kb on + strandat 122.408 kb on + strandat 122.455 kb on + strandat 122.474 kb on + strandat 122.543 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB68
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120,792 - ydhQ NIAGMN_00710 0.51 +0.2
121,167 - ydhQ NIAGMN_00710 0.81 -0.5
121,326 - -0.1
121,415 - +1.9
121,415 - -1.1
121,452 - +1.9
121,452 - +2.9
121,452 - +1.2
121,535 - +0.4
121,554 - -1.1
121,708 + +0.4
121,708 + -0.3
121,708 + -1.8
121,724 + +0.9
121,724 + -0.1
121,724 + -1.1
122,408 + -1.5
122,455 + +0.4
122,474 + -1.3
122,543 - +0.9

Or see this region's nucleotide sequence