Strain Fitness in Escherichia fergusonii Becca around EFB2_04786

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
5,035,904	+				+0.5
5,035,904	+				+0.2
5,035,904	+				+0.8
5,035,905	-				+0.8
5,035,926	+				+1.5
5,035,926	+				-1.1
5,035,926	+				+1.7
5,035,926	+				+0.2
5,035,926	+				-0.5
5,035,926	+				-2.4
5,035,926	+				-1.2
5,035,926	+				+1.4
5,035,926	+				-0.8
5,035,927	-				+0.2
5,035,927	-				+1.4
5,035,927	-				-0.1
5,035,927	-				+1.3
5,035,927	-				+1.0
5,035,927	-				+1.0
5,035,927	-				-0.0
5,036,027	+		EFB2_04785	0.12	+1.6
5,036,028	-		EFB2_04785	0.12	-0.7
5,036,028	-		EFB2_04785	0.12	-0.4
5,036,028	-		EFB2_04785	0.12	-1.5
5,036,068	-		EFB2_04785	0.16	+0.3
5,036,075	+		EFB2_04785	0.17	+0.6
5,036,075	+		EFB2_04785	0.17	-0.6
5,036,075	+		EFB2_04785	0.17	-0.9
5,036,076	-		EFB2_04785	0.17	+0.2
5,036,167	+		EFB2_04785	0.26	+0.7
5,036,167	+		EFB2_04785	0.26	+0.7
5,036,167	+		EFB2_04785	0.26	-0.1
5,036,167	+		EFB2_04785	0.26	+0.2
5,036,167	+		EFB2_04785	0.26	-0.7
5,036,167	+		EFB2_04785	0.26	+0.9
5,036,167	+		EFB2_04785	0.26	+0.5
5,036,167	+		EFB2_04785	0.26	-0.7
5,036,167	+		EFB2_04785	0.26	+1.8
5,036,167	+		EFB2_04785	0.26	+0.1
5,036,167	+		EFB2_04785	0.26	+1.0
5,036,168	-		EFB2_04785	0.26	+1.1
5,036,168	-		EFB2_04785	0.26	+0.6
5,036,168	-		EFB2_04785	0.26	+1.2
5,036,168	-		EFB2_04785	0.26	-2.1
5,036,168	-		EFB2_04785	0.26	-0.7
5,036,168	-		EFB2_04785	0.26	-0.1
5,036,168	-		EFB2_04785	0.26	-0.2
5,036,168	-		EFB2_04785	0.26	+1.1
5,036,168	-		EFB2_04785	0.26	-2.8
5,036,168	-		EFB2_04785	0.26	-0.1
5,036,168	-		EFB2_04785	0.26	-0.6
5,036,168	-		EFB2_04785	0.26	+1.2
5,036,168	-		EFB2_04785	0.26	-0.6
5,036,168	-		EFB2_04785	0.26	+0.2
5,036,171	+		EFB2_04785	0.26	-1.6
5,036,171	+		EFB2_04785	0.26	-0.5
5,036,171	+		EFB2_04785	0.26	-2.2
5,036,171	+		EFB2_04785	0.26	-0.3
5,036,172	-		EFB2_04785	0.26	+1.4
5,036,172	-		EFB2_04785	0.26	-0.2
5,036,172	-		EFB2_04785	0.26	-1.7
5,036,172	-		EFB2_04785	0.26	-1.7
5,036,172	-		EFB2_04785	0.26	-0.2
5,036,172	-		EFB2_04785	0.26	-3.2
5,036,172	-		EFB2_04785	0.26	+0.1
5,036,172	-		EFB2_04785	0.26	-0.2
5,036,220	+		EFB2_04785	0.31	-1.6
5,036,220	+		EFB2_04785	0.31	+0.8
5,036,265	+		EFB2_04785	0.36	-0.1
5,036,265	+		EFB2_04785	0.36	-0.0
5,036,265	+		EFB2_04785	0.36	+0.2
5,036,265	+		EFB2_04785	0.36	-0.6
5,036,322	+		EFB2_04785	0.41	-0.4
5,036,322	+		EFB2_04785	0.41	+0.5
5,036,322	+		EFB2_04785	0.41	-0.2
5,036,322	+		EFB2_04785	0.41	+1.1
5,036,322	+		EFB2_04785	0.41	+2.8
5,036,322	+		EFB2_04785	0.41	-0.4
5,036,323	-		EFB2_04785	0.41	-1.1
5,036,323	-		EFB2_04785	0.41	-0.6
5,036,323	-		EFB2_04785	0.41	+0.5
5,036,364	+		EFB2_04785	0.46	-0.4
5,036,364	+		EFB2_04785	0.46	-1.0
5,036,364	+		EFB2_04785	0.46	+0.2
5,036,365	-		EFB2_04785	0.46	+0.6
5,036,365	-		EFB2_04785	0.46	-0.7
5,036,378	+		EFB2_04785	0.47	-0.8
5,036,378	+		EFB2_04785	0.47	+0.7
5,036,378	+		EFB2_04785	0.47	+0.2
5,036,379	-		EFB2_04785	0.47	-0.3
5,036,379	-		EFB2_04785	0.47	+1.0
5,036,379	-		EFB2_04785	0.47	-3.7
5,036,379	-		EFB2_04785	0.47	+0.7
5,036,379	-		EFB2_04785	0.47	-0.1
5,036,411	+		EFB2_04785	0.50	-0.1
5,036,411	+		EFB2_04785	0.50	-0.1
5,036,411	+		EFB2_04785	0.50	-0.9
5,036,411	+		EFB2_04785	0.50	-0.0
5,036,412	-		EFB2_04785	0.50	+0.1
5,036,412	-		EFB2_04785	0.50	+0.5
5,036,412	-		EFB2_04785	0.50	+0.1
5,036,412	-		EFB2_04785	0.50	-1.2
5,036,412	-		EFB2_04785	0.50	-0.8
5,036,448	+		EFB2_04785	0.54	-1.4
5,036,448	+		EFB2_04785	0.54	+1.2
5,036,448	+		EFB2_04785	0.54	-2.0
5,036,448	+		EFB2_04785	0.54	-2.8
5,036,449	-		EFB2_04785	0.54	-0.2
5,036,462	+		EFB2_04785	0.55	-0.7
5,036,462	+		EFB2_04785	0.55	+0.1
5,036,462	+		EFB2_04785	0.55	+0.4
5,036,463	-		EFB2_04785	0.55	+0.6
5,036,475	-		EFB2_04785	0.57	+0.2
5,036,582	+		EFB2_04785	0.67	+0.4
5,036,582	+		EFB2_04785	0.67	+0.2
5,036,583	-		EFB2_04785	0.67	-1.7
5,036,583	-		EFB2_04785	0.67	-3.0
5,036,583	-		EFB2_04785	0.67	-1.1
5,036,583	-		EFB2_04785	0.67	+0.7
5,036,585	+		EFB2_04785	0.68	+0.9
5,036,626	-		EFB2_04785	0.72	+0.3
5,036,626	-		EFB2_04785	0.72	+1.1
5,036,631	+		EFB2_04785	0.72	-0.4
5,036,631	+		EFB2_04785	0.72	-1.4
5,036,631	+		EFB2_04785	0.72	-1.1
5,036,631	+		EFB2_04785	0.72	-1.8
5,036,631	+		EFB2_04785	0.72	-0.1
5,036,631	+		EFB2_04785	0.72	-1.1
5,036,631	+		EFB2_04785	0.72	+1.2
5,036,631	+		EFB2_04785	0.72	+0.6
5,036,631	+		EFB2_04785	0.72	+1.3
5,036,631	+		EFB2_04785	0.72	-0.9
5,036,632	-		EFB2_04785	0.72	-0.6
5,036,632	-		EFB2_04785	0.72	+0.4
5,036,632	-		EFB2_04785	0.72	+0.4
5,036,632	-		EFB2_04785	0.72	-3.0
5,036,632	-		EFB2_04785	0.72	-1.8
5,036,632	-		EFB2_04785	0.72	+0.4
5,036,632	-		EFB2_04785	0.72	-0.1
5,036,632	-		EFB2_04785	0.72	+0.3
5,036,632	-		EFB2_04785	0.72	+0.0
5,036,632	-		EFB2_04785	0.72	-0.4
5,036,632	-		EFB2_04785	0.72	-3.3
5,036,632	-		EFB2_04785	0.72	-1.5
5,036,632	-		EFB2_04785	0.72	+2.0
5,036,632	-		EFB2_04785	0.72	+1.1
5,036,632	-		EFB2_04785	0.72	+1.0
5,036,653	+		EFB2_04785	0.74	+0.8
5,036,653	+		EFB2_04785	0.74	-0.4
5,036,653	+		EFB2_04785	0.74	-0.2
5,036,653	+		EFB2_04785	0.74	-1.6
5,036,653	+		EFB2_04785	0.74	-0.0
5,036,653	+		EFB2_04785	0.74	-0.8
5,036,654	-		EFB2_04785	0.74	+0.3
5,036,672	+		EFB2_04785	0.76	+0.8
5,036,672	+		EFB2_04785	0.76	+1.1
5,036,672	+		EFB2_04785	0.76	+1.9
5,036,672	+		EFB2_04785	0.76	-0.1
5,036,672	+		EFB2_04785	0.76	-1.4
5,036,672	+		EFB2_04785	0.76	-0.0
5,036,673	-		EFB2_04785	0.76	-0.9
5,036,673	-		EFB2_04785	0.76	+0.3
5,036,673	-		EFB2_04785	0.76	-3.2
5,036,684	+		EFB2_04785	0.77	-0.1
5,036,684	+		EFB2_04785	0.77	-1.5
5,036,684	+		EFB2_04785	0.77	-1.3
5,036,684	+		EFB2_04785	0.77	-0.3
5,036,684	+		EFB2_04785	0.77	-0.7
5,036,684	+		EFB2_04785	0.77	-0.6
5,036,684	+		EFB2_04785	0.77	-1.6
5,036,684	+		EFB2_04785	0.77	+0.3
5,036,684	+		EFB2_04785	0.77	-0.1
5,036,684	+		EFB2_04785	0.77	+0.8
5,036,684	+		EFB2_04785	0.77	+1.1
5,036,684	+		EFB2_04785	0.77	-1.6
5,036,684	+		EFB2_04785	0.77	+1.2
5,036,684	+		EFB2_04785	0.77	-4.0
5,036,684	+		EFB2_04785	0.77	-2.9
5,036,684	+		EFB2_04785	0.77	-0.1
5,036,684	+		EFB2_04785	0.77	+0.3
5,036,684	+		EFB2_04785	0.77	-2.5
5,036,684	+		EFB2_04785	0.77	-1.5
5,036,684	+		EFB2_04785	0.77	-3.1
5,036,684	+		EFB2_04785	0.77	-0.7
5,036,684	+		EFB2_04785	0.77	+0.3
5,036,685	-		EFB2_04785	0.78	+0.6
5,036,685	-		EFB2_04785	0.78	+0.3
5,036,685	-		EFB2_04785	0.78	-0.0
5,036,685	-		EFB2_04785	0.78	+1.1
5,036,685	-		EFB2_04785	0.78	-0.9
5,036,685	-		EFB2_04785	0.78	+0.0
5,036,685	-		EFB2_04785	0.78	+0.6
5,036,685	-		EFB2_04785	0.78	-0.9
5,036,685	-		EFB2_04785	0.78	-0.7
5,036,685	-		EFB2_04785	0.78	+0.4
5,036,685	-		EFB2_04785	0.78	-0.9
5,036,685	-		EFB2_04785	0.78	-0.2
5,036,685	-		EFB2_04785	0.78	+0.2
5,036,685	-		EFB2_04785	0.78	-1.4
5,036,685	-		EFB2_04785	0.78	-0.4
5,036,685	-		EFB2_04785	0.78	-0.1
5,036,685	-		EFB2_04785	0.78	+1.1
5,036,685	-		EFB2_04785	0.78	-0.4
5,036,685	-		EFB2_04785	0.78	-0.0
5,036,685	-		EFB2_04785	0.78	-3.2
5,036,685	-		EFB2_04785	0.78	+0.8
5,036,685	-		EFB2_04785	0.78	-0.3
5,036,708	+		EFB2_04785	0.80	+0.3
5,036,709	-		EFB2_04785	0.80	-1.4
5,036,709	-		EFB2_04785	0.80	+1.0
5,036,709	-		EFB2_04785	0.80	+0.4
5,036,717	+		EFB2_04785	0.81	-0.7
5,036,718	-		EFB2_04785	0.81	-1.9
5,036,770	+		EFB2_04785	0.86	+1.4
5,036,770	+		EFB2_04785	0.86	-0.7
5,036,810	+				+0.7
5,036,810	+				-0.8
5,036,810	+				+4.6
5,036,810	+				-0.1
5,036,810	+				+0.6
5,036,810	+				-1.2
5,036,810	+				+0.1
5,036,810	+				-2.9
5,036,810	+				+0.6
5,036,810	+				+0.9
5,036,811	-				+0.2
5,036,811	-				-1.3
5,036,811	-				+1.4
5,036,811	-				-0.7
5,036,811	-				-0.6
5,036,811	-				+0.3
5,036,823	+				-0.1
5,036,823	+				-1.0
5,036,824	-				+0.3
5,036,843	+				-0.0
5,036,843	+				+0.3
5,036,844	-				-1.4
5,036,895	+				+0.1
5,036,895	+				-0.3
5,036,895	+				+0.4
5,036,895	+				-1.9
5,036,895	+				-0.3
5,036,895	+				-1.3
5,036,895	+				+0.6
5,036,895	+				-1.3
5,036,895	+				+0.5
5,036,895	+				+0.2
5,036,895	+				-1.0
5,036,895	+				+0.4
5,036,895	+				+1.4
5,036,895	+				+0.2
5,036,895	+				-2.0
5,036,896	-				-1.4
5,036,896	-				-2.0
5,036,896	-				+0.7
5,036,896	-				+1.4
5,036,896	-				-2.4
5,036,896	-				+0.2
5,036,896	-				-3.3
5,036,896	-				-1.8
5,036,896	-				-2.3
5,036,896	-				-4.0
5,036,896	-				+0.7
5,036,896	-				+0.9
5,036,908	+				+1.7
5,036,908	+				+0.2
5,036,908	+				+2.1
5,036,908	+				-0.3
5,036,908	+				+0.2
5,036,908	+				-0.1
5,036,909	-				+0.6
5,036,909	-				+0.8
5,036,909	-				+0.6
5,036,909	-				+0.1
5,036,909	-				+0.9
5,036,909	-				+0.0
5,036,909	-				-0.0
5,036,909	-				+0.4
5,036,909	-				-0.4
5,036,911	+				+0.7
5,036,911	+				-0.6
5,036,911	+				-0.8
5,036,912	-				-0.3
5,036,912	-				-1.1
5,036,912	-				-0.2
5,036,912	-				+1.1
5,036,912	-				-0.1
5,036,912	-				+1.2
5,036,935	-				-1.6
5,036,947	-				-1.1
5,036,993	+		EFB2_04786	0.15	-0.4
5,036,994	-		EFB2_04786	0.15	-1.1
5,036,994	-		EFB2_04786	0.15	-0.6
5,037,025	+		EFB2_04786	0.20	-0.6
5,037,025	+		EFB2_04786	0.20	+0.5
5,037,025	+		EFB2_04786	0.20	+0.4
5,037,025	+		EFB2_04786	0.20	+0.3
5,037,025	+		EFB2_04786	0.20	-1.1
5,037,025	+		EFB2_04786	0.20	-1.3
5,037,025	+		EFB2_04786	0.20	+0.2
5,037,026	-		EFB2_04786	0.20	+0.7
5,037,026	-		EFB2_04786	0.20	+1.4
5,037,026	-		EFB2_04786	0.20	+0.9
5,037,026	-		EFB2_04786	0.20	-0.7
5,037,026	-		EFB2_04786	0.20	-0.4
5,037,026	-		EFB2_04786	0.20	-2.4
5,037,026	-		EFB2_04786	0.20	+0.9
5,037,026	-		EFB2_04786	0.20	+0.3
5,037,026	-		EFB2_04786	0.20	+0.1
5,037,026	-		EFB2_04786	0.20	+0.6
5,037,052	+		EFB2_04786	0.24	+0.4
5,037,052	+		EFB2_04786	0.24	-2.2
5,037,052	+		EFB2_04786	0.24	+0.1
5,037,060	+		EFB2_04786	0.25	+0.2
5,037,060	+		EFB2_04786	0.25	-1.6
5,037,061	-		EFB2_04786	0.26	+0.8
5,037,061	-		EFB2_04786	0.26	-0.4
5,037,061	-		EFB2_04786	0.26	-0.9
5,037,079	+		EFB2_04786	0.28	+0.7
5,037,079	+		EFB2_04786	0.28	+0.1
5,037,080	-		EFB2_04786	0.29	-0.8
5,037,080	-		EFB2_04786	0.29	+0.3
5,037,080	-		EFB2_04786	0.29	+0.6
5,037,080	-		EFB2_04786	0.29	-0.2
5,037,117	+		EFB2_04786	0.34	+0.6
5,037,158	-		EFB2_04786	0.41	-0.8
5,037,179	-		EFB2_04786	0.44	+0.6
5,037,211	+		EFB2_04786	0.49	+1.3
5,037,211	+		EFB2_04786	0.49	+1.0
5,037,211	+		EFB2_04786	0.49	+1.4
5,037,211	+		EFB2_04786	0.49	+0.4
5,037,211	+		EFB2_04786	0.49	-0.4
5,037,211	+		EFB2_04786	0.49	+0.5
5,037,212	-		EFB2_04786	0.50	+0.3
5,037,212	-		EFB2_04786	0.50	+0.2
5,037,212	-		EFB2_04786	0.50	+0.5
5,037,212	-		EFB2_04786	0.50	-0.4
5,037,215	+		EFB2_04786	0.50	+0.6
5,037,215	+		EFB2_04786	0.50	+0.7
5,037,215	+		EFB2_04786	0.50	+1.0
5,037,215	+		EFB2_04786	0.50	+0.7
5,037,215	+		EFB2_04786	0.50	-0.9
5,037,215	+		EFB2_04786	0.50	-1.0
5,037,215	+		EFB2_04786	0.50	-0.0
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