Strain Fitness in Escherichia fergusonii Becca around EFB2_04679

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
4,929,555	+		EFB2_04678	0.62	-0.2
4,929,555	+		EFB2_04678	0.62	-1.4
4,929,556	-		EFB2_04678	0.62	-0.2
4,929,617	+		EFB2_04678	0.64	-1.2
4,929,618	-		EFB2_04678	0.64	-1.0
4,929,618	-		EFB2_04678	0.64	+0.2
4,929,621	+		EFB2_04678	0.65	-1.3
4,929,621	+		EFB2_04678	0.65	-0.2
4,929,621	+		EFB2_04678	0.65	-1.0
4,929,621	+		EFB2_04678	0.65	+0.2
4,929,621	+		EFB2_04678	0.65	-0.4
4,929,621	+		EFB2_04678	0.65	-0.2
4,929,622	-		EFB2_04678	0.65	-0.6
4,929,622	-		EFB2_04678	0.65	+0.2
4,929,622	-		EFB2_04678	0.65	+2.2
4,929,622	-		EFB2_04678	0.65	-1.6
4,929,622	-		EFB2_04678	0.65	-0.6
4,929,664	+		EFB2_04678	0.66	-2.3
4,929,665	-		EFB2_04678	0.66	-0.2
4,929,665	-		EFB2_04678	0.66	-1.2
4,929,665	-		EFB2_04678	0.66	-1.0
4,929,665	-		EFB2_04678	0.66	-2.1
4,929,670	-		EFB2_04678	0.67	-0.2
4,929,759	+		EFB2_04678	0.70	-1.0
4,929,774	+		EFB2_04678	0.71	+0.2
4,929,774	+		EFB2_04678	0.71	-0.6
4,929,775	-		EFB2_04678	0.71	-2.0
4,929,775	-		EFB2_04678	0.71	-0.6
4,929,775	-		EFB2_04678	0.71	-1.4
4,929,775	-		EFB2_04678	0.71	-0.2
4,929,776	+		EFB2_04678	0.71	+1.2
4,929,776	+		EFB2_04678	0.71	-0.8
4,929,776	+		EFB2_04678	0.71	-1.3
4,929,776	+		EFB2_04678	0.71	-1.0
4,929,776	+		EFB2_04678	0.71	+0.2
4,929,776	+		EFB2_04678	0.71	+2.2
4,929,776	+		EFB2_04678	0.71	+0.2
4,929,776	+		EFB2_04678	0.71	-1.2
4,929,776	+		EFB2_04678	0.71	+0.6
4,929,776	+		EFB2_04678	0.71	-1.8
4,929,776	+		EFB2_04678	0.71	+1.2
4,929,777	-		EFB2_04678	0.71	-0.6
4,929,777	-		EFB2_04678	0.71	-1.2
4,929,777	-		EFB2_04678	0.71	+1.2
4,929,777	-		EFB2_04678	0.71	+0.2
4,929,777	-		EFB2_04678	0.71	+0.6
4,929,777	-		EFB2_04678	0.71	-0.2
4,929,777	-		EFB2_04678	0.71	-0.6
4,929,777	-		EFB2_04678	0.71	+0.6
4,929,777	-		EFB2_04678	0.71	+0.6
4,929,777	-		EFB2_04678	0.71	-1.8
4,929,777	-		EFB2_04678	0.71	-0.6
4,929,777	-		EFB2_04678	0.71	-1.4
4,929,777	-		EFB2_04678	0.71	+0.2
4,929,777	-		EFB2_04678	0.71	-1.8
4,929,778	+		EFB2_04678	0.71	-1.8
4,929,778	+		EFB2_04678	0.71	-0.8
4,929,778	+		EFB2_04678	0.71	-1.8
4,929,778	+		EFB2_04678	0.71	+2.2
4,929,779	-		EFB2_04678	0.71	-1.8
4,929,779	-		EFB2_04678	0.71	-1.3
4,929,779	-		EFB2_04678	0.71	-0.4
4,929,779	-		EFB2_04678	0.71	-0.8
4,929,806	-		EFB2_04678	0.72	-1.0
4,929,848	+		EFB2_04678	0.74	-0.6
4,929,904	-		EFB2_04678	0.76	-1.6
4,929,904	-		EFB2_04678	0.76	-1.8
4,929,940	+		EFB2_04678	0.78	-0.8
4,929,940	+		EFB2_04678	0.78	+1.2
4,929,940	+		EFB2_04678	0.78	-0.6
4,929,940	+		EFB2_04678	0.78	-1.2
4,929,941	-		EFB2_04678	0.78	-0.4
4,929,946	+		EFB2_04678	0.78	-1.8
4,929,946	+		EFB2_04678	0.78	-2.3
4,929,946	+		EFB2_04678	0.78	+0.6
4,929,946	+		EFB2_04678	0.78	-0.8
4,929,946	+		EFB2_04678	0.78	-2.0
4,929,946	+		EFB2_04678	0.78	-3.0
4,929,946	+		EFB2_04678	0.78	-1.4
4,929,946	+		EFB2_04678	0.78	+0.6
4,929,946	+		EFB2_04678	0.78	-0.8
4,929,947	-		EFB2_04678	0.78	-1.5
4,929,947	-		EFB2_04678	0.78	-1.4
4,929,947	-		EFB2_04678	0.78	-2.9
4,929,947	-		EFB2_04678	0.78	-1.2
4,929,947	-		EFB2_04678	0.78	-1.2
4,929,947	-		EFB2_04678	0.78	-3.0
4,929,947	-		EFB2_04678	0.78	-1.2
4,930,060	-		EFB2_04678	0.83	-1.6
4,930,060	-		EFB2_04678	0.83	-1.5
4,930,060	-		EFB2_04678	0.83	-2.4
4,930,118	+		EFB2_04678	0.85	-0.6
4,930,119	-		EFB2_04678	0.85	+2.2
4,930,242	-				-2.5
4,930,242	-				-1.3
4,930,295	-				+0.2
4,930,354	-				+0.6
4,930,354	-				-2.8
4,930,380	+				-2.4
4,930,400	+				-1.0
4,930,400	+				-1.4
4,930,400	+				-1.2
4,930,401	-				-0.6
4,930,401	-				-0.4
4,930,401	-				-1.0
4,930,422	+				-1.5
4,930,422	+				+0.6
4,930,422	+				-0.4
4,930,423	-				-1.4
4,930,423	-				+0.2
4,930,423	-				-0.6
4,930,423	-				-0.8
4,930,487	-				-2.2
4,930,530	+				-3.5
4,930,531	-				+0.8
4,930,531	-				-0.1
4,930,531	-				+0.6
4,930,531	-				+0.2
4,930,562	+				+0.3
4,930,562	+				-1.1
4,930,562	+				+0.1
4,930,562	+				+0.1
4,930,563	-				-1.2
4,930,563	-				+0.5
4,930,563	-				-0.7
4,930,563	-				+0.4
4,930,563	-				+1.0
4,930,647	+		EFB2_04679	0.14	+0.1
4,930,648	-		EFB2_04679	0.14	-0.0
4,930,648	-		EFB2_04679	0.14	+0.3
4,930,648	-		EFB2_04679	0.14	-0.3
4,930,648	-		EFB2_04679	0.14	-0.8
4,930,666	-		EFB2_04679	0.16	+1.2
4,930,682	+		EFB2_04679	0.17	-0.5
4,930,682	+		EFB2_04679	0.17	+0.2
4,930,682	+		EFB2_04679	0.17	-0.4
4,930,683	-		EFB2_04679	0.17	+0.1
4,930,683	-		EFB2_04679	0.17	-1.1
4,930,683	-		EFB2_04679	0.17	+0.5
4,930,683	-		EFB2_04679	0.17	-0.3
4,930,683	-		EFB2_04679	0.17	-1.8
4,930,683	-		EFB2_04679	0.17	-1.0
4,930,819	+		EFB2_04679	0.29	+0.8
4,930,819	+		EFB2_04679	0.29	+0.4
4,930,819	+		EFB2_04679	0.29	-0.0
4,930,820	-		EFB2_04679	0.29	-0.1
4,930,852	+		EFB2_04679	0.32	-0.2
4,930,852	+		EFB2_04679	0.32	-0.2
4,930,852	+		EFB2_04679	0.32	+0.8
4,930,853	-		EFB2_04679	0.32	-0.4
4,930,853	-		EFB2_04679	0.32	+1.5
4,930,853	-		EFB2_04679	0.32	-0.2
4,930,853	-		EFB2_04679	0.32	+0.9
4,930,930	+		EFB2_04679	0.38	-1.6
4,930,930	+		EFB2_04679	0.38	-0.4
4,930,930	+		EFB2_04679	0.38	-0.7
4,930,930	+		EFB2_04679	0.38	-1.7
4,930,930	+		EFB2_04679	0.38	-0.2
4,930,930	+		EFB2_04679	0.38	+1.0
4,930,930	+		EFB2_04679	0.38	+0.4
4,930,930	+		EFB2_04679	0.38	-2.4
4,930,930	+		EFB2_04679	0.38	+0.1
4,930,930	+		EFB2_04679	0.38	+1.6
4,930,930	+		EFB2_04679	0.38	-1.3
4,930,930	+		EFB2_04679	0.38	-1.7
4,930,930	+		EFB2_04679	0.38	-2.9
4,930,930	+		EFB2_04679	0.38	+1.9
4,930,930	+		EFB2_04679	0.38	+0.2
4,930,930	+		EFB2_04679	0.38	-0.4
4,930,930	+		EFB2_04679	0.38	-3.0
4,930,930	+		EFB2_04679	0.38	-2.2
4,930,930	+		EFB2_04679	0.38	+0.8
4,930,930	+		EFB2_04679	0.38	+1.5
4,930,930	+		EFB2_04679	0.38	+0.6
4,930,930	+		EFB2_04679	0.38	+0.6
4,930,930	+		EFB2_04679	0.38	-0.2
4,930,931	-		EFB2_04679	0.38	-0.2
4,930,931	-		EFB2_04679	0.38	+0.5
4,930,931	-		EFB2_04679	0.38	+0.9
4,930,931	-		EFB2_04679	0.38	-2.2
4,930,931	-		EFB2_04679	0.38	+0.1
4,930,931	-		EFB2_04679	0.38	-1.1
4,930,931	-		EFB2_04679	0.38	+0.2
4,930,931	-		EFB2_04679	0.38	-2.8
4,930,931	-		EFB2_04679	0.38	-0.8
4,930,931	-		EFB2_04679	0.38	+0.2
4,930,931	-		EFB2_04679	0.38	+1.5
4,930,931	-		EFB2_04679	0.38	-0.5
4,930,931	-		EFB2_04679	0.38	-0.2
4,930,931	-		EFB2_04679	0.38	+0.3
4,930,931	-		EFB2_04679	0.38	+0.4
4,930,931	-		EFB2_04679	0.38	-0.2
4,930,931	-		EFB2_04679	0.38	-0.4
4,930,931	-		EFB2_04679	0.38	+0.6
4,930,931	-		EFB2_04679	0.38	-0.2
4,930,931	-		EFB2_04679	0.38	+0.0
4,930,931	-		EFB2_04679	0.38	+1.2
4,930,931	-		EFB2_04679	0.38	+1.2
4,930,931	-		EFB2_04679	0.38	+0.7
4,930,931	-		EFB2_04679	0.38	-0.4
4,930,961	+		EFB2_04679	0.41	+0.3
4,930,961	+		EFB2_04679	0.41	-0.5
4,930,961	+		EFB2_04679	0.41	+0.8
4,930,962	-		EFB2_04679	0.41	-0.3
4,930,962	-		EFB2_04679	0.41	+1.0
4,930,962	-		EFB2_04679	0.41	+0.3
4,931,006	+		EFB2_04679	0.45	-0.3
4,931,006	+		EFB2_04679	0.45	-0.2
4,931,007	-		EFB2_04679	0.45	-1.5
4,931,007	-		EFB2_04679	0.45	+1.4
4,931,007	-		EFB2_04679	0.45	+0.2
4,931,016	+		EFB2_04679	0.46	+1.2
4,931,016	+		EFB2_04679	0.46	+0.5
4,931,016	+		EFB2_04679	0.46	+4.0
4,931,051	-		EFB2_04679	0.49	-0.1
4,931,085	+		EFB2_04679	0.52	+0.4
4,931,085	+		EFB2_04679	0.52	-0.6
4,931,085	+		EFB2_04679	0.52	-0.8
4,931,085	+		EFB2_04679	0.52	+0.4
4,931,085	+		EFB2_04679	0.52	-0.2
4,931,085	+		EFB2_04679	0.52	+0.2
4,931,085	+		EFB2_04679	0.52	+0.2
4,931,085	+		EFB2_04679	0.52	-0.3
4,931,085	+		EFB2_04679	0.52	-0.4
4,931,085	+		EFB2_04679	0.52	+0.8
4,931,085	+		EFB2_04679	0.52	+0.9
4,931,085	+		EFB2_04679	0.52	+0.9
4,931,085	+		EFB2_04679	0.52	-0.3
4,931,085	+		EFB2_04679	0.52	-1.3
4,931,085	+		EFB2_04679	0.52	+1.1
4,931,086	-		EFB2_04679	0.52	-0.6
4,931,086	-		EFB2_04679	0.52	+0.4
4,931,086	-		EFB2_04679	0.52	+0.9
4,931,086	-		EFB2_04679	0.52	+1.2
4,931,086	-		EFB2_04679	0.52	-0.3
4,931,086	-		EFB2_04679	0.52	-1.3
4,931,086	-		EFB2_04679	0.52	-0.2
4,931,086	-		EFB2_04679	0.52	-0.3
4,931,086	-		EFB2_04679	0.52	+2.2
4,931,103	+		EFB2_04679	0.53	-0.0
4,931,115	+		EFB2_04679	0.54	+1.2
4,931,115	+		EFB2_04679	0.54	+0.3
4,931,115	+		EFB2_04679	0.54	-0.2
4,931,115	+		EFB2_04679	0.54	+1.1
4,931,115	+		EFB2_04679	0.54	+0.1
4,931,115	+		EFB2_04679	0.54	-0.4
4,931,116	-		EFB2_04679	0.54	+1.2
4,931,116	-		EFB2_04679	0.54	-1.3
4,931,116	-		EFB2_04679	0.54	+1.0
4,931,126	+		EFB2_04679	0.55	-0.1
4,931,127	-		EFB2_04679	0.55	-0.7
4,931,194	-		EFB2_04679	0.61	+0.6
4,931,194	-		EFB2_04679	0.61	-1.2
4,931,204	+		EFB2_04679	0.62	-0.1
4,931,204	+		EFB2_04679	0.62	+1.6
4,931,204	+		EFB2_04679	0.62	-0.4
4,931,204	+		EFB2_04679	0.62	+1.0
4,931,204	+		EFB2_04679	0.62	+0.0
4,931,205	-		EFB2_04679	0.62	-0.2
4,931,205	-		EFB2_04679	0.62	+0.4
4,931,217	+		EFB2_04679	0.63	-0.3
4,931,217	+		EFB2_04679	0.63	-2.6
4,931,217	+		EFB2_04679	0.63	+0.2
4,931,217	+		EFB2_04679	0.63	-0.7
4,931,217	+		EFB2_04679	0.63	-1.7
4,931,218	-		EFB2_04679	0.63	+0.1
4,931,223	+		EFB2_04679	0.64	+0.8
4,931,223	+		EFB2_04679	0.64	+1.0
4,931,224	-		EFB2_04679	0.64	+0.9
4,931,224	-		EFB2_04679	0.64	+1.0
4,931,297	-		EFB2_04679	0.70	+0.4
4,931,297	-		EFB2_04679	0.70	-0.3
4,931,332	+		EFB2_04679	0.73	+0.1
4,931,333	-		EFB2_04679	0.73	-0.3
4,931,336	+		EFB2_04679	0.73	+0.2
4,931,423	+		EFB2_04679	0.81	+1.2
4,931,426	+		EFB2_04679	0.81	-0.0
4,931,426	+		EFB2_04679	0.81	+0.1
4,931,426	+		EFB2_04679	0.81	+0.5
4,931,426	+		EFB2_04679	0.81	-0.8
4,931,426	+		EFB2_04679	0.81	+0.3
4,931,426	+		EFB2_04679	0.81	+1.0
4,931,426	+		EFB2_04679	0.81	-0.8
4,931,426	+		EFB2_04679	0.81	-0.0
4,931,426	+		EFB2_04679	0.81	-1.5
4,931,426	+		EFB2_04679	0.81	+0.1
4,931,426	+		EFB2_04679	0.81	+1.0
4,931,426	+		EFB2_04679	0.81	-0.6
4,931,427	-		EFB2_04679	0.81	-2.9
4,931,427	-		EFB2_04679	0.81	-1.2
4,931,427	-		EFB2_04679	0.81	-0.9
4,931,427	-		EFB2_04679	0.81	+1.9
4,931,427	-		EFB2_04679	0.81	+0.7
4,931,427	-		EFB2_04679	0.81	-0.2
4,931,427	-		EFB2_04679	0.81	-3.3
4,931,427	-		EFB2_04679	0.81	+0.9
4,931,427	-		EFB2_04679	0.81	+0.0
4,931,429	+		EFB2_04679	0.81	+2.2
4,931,429	+		EFB2_04679	0.81	-0.5
4,931,429	+		EFB2_04679	0.81	+0.6
4,931,429	+		EFB2_04679	0.81	-0.0
4,931,429	+		EFB2_04679	0.81	+2.0
4,931,429	+		EFB2_04679	0.81	-0.4
4,931,429	+		EFB2_04679	0.81	+1.0
4,931,429	+		EFB2_04679	0.81	+0.2
4,931,429	+		EFB2_04679	0.81	-1.5
4,931,429	+		EFB2_04679	0.81	+1.0
4,931,429	+		EFB2_04679	0.81	+0.1
4,931,429	+		EFB2_04679	0.81	-0.8
4,931,429	+		EFB2_04679	0.81	-1.7
4,931,429	+		EFB2_04679	0.81	+0.0
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