Strain Fitness in Escherichia fergusonii Becca around EFB2_04534

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
4,757,519	+		EFB2_04533	0.67	-0.1
4,757,519	+		EFB2_04533	0.67	-1.3
4,757,520	-		EFB2_04533	0.67	+0.0
4,757,520	-		EFB2_04533	0.67	+0.0
4,757,529	+		EFB2_04533	0.67	-2.8
4,757,559	+		EFB2_04533	0.69	-0.0
4,757,575	-		EFB2_04533	0.69	-1.3
4,757,642	-		EFB2_04533	0.71	+0.7
4,757,650	-		EFB2_04533	0.72	-2.9
4,757,709	+		EFB2_04533	0.74	-0.1
4,757,710	-		EFB2_04533	0.74	+0.1
4,757,710	-		EFB2_04533	0.74	+1.3
4,757,710	-		EFB2_04533	0.74	+0.1
4,757,721	+		EFB2_04533	0.74	+0.2
4,757,734	+		EFB2_04533	0.75	-1.7
4,757,734	+		EFB2_04533	0.75	-0.1
4,757,734	+		EFB2_04533	0.75	+0.5
4,757,734	+		EFB2_04533	0.75	-0.9
4,757,734	+		EFB2_04533	0.75	-0.9
4,757,734	+		EFB2_04533	0.75	-0.6
4,757,734	+		EFB2_04533	0.75	-1.5
4,757,734	+		EFB2_04533	0.75	+0.2
4,757,734	+		EFB2_04533	0.75	-0.3
4,757,734	+		EFB2_04533	0.75	+0.9
4,757,734	+		EFB2_04533	0.75	-0.6
4,757,734	+		EFB2_04533	0.75	+0.7
4,757,735	-		EFB2_04533	0.75	+0.3
4,757,735	-		EFB2_04533	0.75	-2.6
4,757,735	-		EFB2_04533	0.75	+0.5
4,757,735	-		EFB2_04533	0.75	+0.5
4,757,735	-		EFB2_04533	0.75	+0.5
4,757,735	-		EFB2_04533	0.75	-0.6
4,757,735	-		EFB2_04533	0.75	+1.0
4,757,735	-		EFB2_04533	0.75	-1.1
4,757,735	-		EFB2_04533	0.75	-0.4
4,757,735	-		EFB2_04533	0.75	-0.4
4,757,735	-		EFB2_04533	0.75	-0.5
4,757,735	-		EFB2_04533	0.75	+0.0
4,757,736	+		EFB2_04533	0.75	-0.5
4,757,737	-		EFB2_04533	0.75	-1.2
4,757,748	+		EFB2_04533	0.75	+0.3
4,757,749	-		EFB2_04533	0.75	-0.6
4,757,749	-		EFB2_04533	0.75	-2.5
4,757,800	+		EFB2_04533	0.77	+1.0
4,757,800	+		EFB2_04533	0.77	+0.1
4,757,802	+		EFB2_04533	0.77	+0.2
4,757,802	+		EFB2_04533	0.77	-1.0
4,757,802	+		EFB2_04533	0.77	+0.9
4,757,802	+		EFB2_04533	0.77	-1.1
4,757,802	+		EFB2_04533	0.77	-1.9
4,757,802	+		EFB2_04533	0.77	+0.1
4,757,803	-		EFB2_04533	0.77	-0.1
4,757,803	-		EFB2_04533	0.77	+0.5
4,757,803	-		EFB2_04533	0.77	-0.7
4,757,803	-		EFB2_04533	0.77	-0.1
4,757,803	-		EFB2_04533	0.77	+0.5
4,757,803	-		EFB2_04533	0.77	-0.9
4,757,803	-		EFB2_04533	0.77	+0.7
4,757,803	-		EFB2_04533	0.77	+0.3
4,757,823	+		EFB2_04533	0.78	-0.1
4,757,902	+		EFB2_04533	0.81	+0.3
4,757,902	+		EFB2_04533	0.81	+1.2
4,757,902	+		EFB2_04533	0.81	-1.2
4,757,902	+		EFB2_04533	0.81	+0.6
4,757,902	+		EFB2_04533	0.81	+0.7
4,757,902	+		EFB2_04533	0.81	+0.2
4,757,902	+		EFB2_04533	0.81	-0.8
4,757,902	+		EFB2_04533	0.81	-1.4
4,757,902	+		EFB2_04533	0.81	+1.2
4,757,902	+		EFB2_04533	0.81	+0.7
4,757,902	+		EFB2_04533	0.81	+0.2
4,757,902	+		EFB2_04533	0.81	+0.2
4,757,902	+		EFB2_04533	0.81	-0.4
4,757,902	+		EFB2_04533	0.81	+0.9
4,757,902	+		EFB2_04533	0.81	+1.0
4,757,902	+		EFB2_04533	0.81	-2.7
4,757,902	+		EFB2_04533	0.81	-0.2
4,757,902	+		EFB2_04533	0.81	+0.4
4,757,902	+		EFB2_04533	0.81	-1.1
4,757,903	-		EFB2_04533	0.81	-0.0
4,757,903	-		EFB2_04533	0.81	+0.6
4,757,903	-		EFB2_04533	0.81	-0.6
4,757,903	-		EFB2_04533	0.81	-2.4
4,757,903	-		EFB2_04533	0.81	-0.6
4,757,903	-		EFB2_04533	0.81	+0.1
4,757,903	-		EFB2_04533	0.81	-1.1
4,757,903	-		EFB2_04533	0.81	-0.5
4,757,903	-		EFB2_04533	0.81	-0.4
4,757,903	-		EFB2_04533	0.81	-0.1
4,757,903	-		EFB2_04533	0.81	-2.9
4,757,903	-		EFB2_04533	0.81	-2.0
4,757,903	-		EFB2_04533	0.81	-1.7
4,757,903	-		EFB2_04533	0.81	+0.3
4,757,903	-		EFB2_04533	0.81	-0.3
4,757,903	-		EFB2_04533	0.81	+0.1
4,757,903	-		EFB2_04533	0.81	-0.7
4,757,903	-		EFB2_04533	0.81	+1.8
4,757,903	-		EFB2_04533	0.81	-1.0
4,757,903	-		EFB2_04533	0.81	-0.3
4,757,903	-		EFB2_04533	0.81	-0.2
4,757,903	-		EFB2_04533	0.81	-1.5
4,757,903	-		EFB2_04533	0.81	-1.2
4,757,903	-		EFB2_04533	0.81	+1.3
4,757,903	-		EFB2_04533	0.81	+0.6
4,757,903	-		EFB2_04533	0.81	-3.3
4,757,903	-		EFB2_04533	0.81	-0.3
4,757,903	-		EFB2_04533	0.81	+0.2
4,757,903	-		EFB2_04533	0.81	-1.1
4,757,903	-		EFB2_04533	0.81	+0.1
4,757,903	-		EFB2_04533	0.81	+0.5
4,757,903	-		EFB2_04533	0.81	+1.2
4,757,903	-		EFB2_04533	0.81	+0.3
4,757,906	+		EFB2_04533	0.81	-1.3
4,757,906	+		EFB2_04533	0.81	+1.6
4,757,906	+		EFB2_04533	0.81	-0.3
4,757,907	-		EFB2_04533	0.81	+0.8
4,757,907	-		EFB2_04533	0.81	-2.6
4,757,907	-		EFB2_04533	0.81	+1.2
4,757,907	-		EFB2_04533	0.81	-3.2
4,757,935	+		EFB2_04533	0.82	+0.4
4,757,935	+		EFB2_04533	0.82	-0.6
4,757,935	+		EFB2_04533	0.82	-2.0
4,757,935	+		EFB2_04533	0.82	+1.1
4,757,935	+		EFB2_04533	0.82	-0.3
4,757,935	+		EFB2_04533	0.82	-2.0
4,757,935	+		EFB2_04533	0.82	+1.2
4,757,935	+		EFB2_04533	0.82	-3.6
4,757,935	+		EFB2_04533	0.82	+0.7
4,757,936	-		EFB2_04533	0.82	+0.3
4,757,936	-		EFB2_04533	0.82	+0.0
4,757,936	-		EFB2_04533	0.82	+0.7
4,757,936	-		EFB2_04533	0.82	-1.1
4,757,937	+		EFB2_04533	0.82	-0.8
4,757,938	-		EFB2_04533	0.82	+1.3
4,757,958	+		EFB2_04533	0.83	+0.4
4,757,958	+		EFB2_04533	0.83	-2.9
4,757,958	+		EFB2_04533	0.83	-0.8
4,757,958	+		EFB2_04533	0.83	-1.3
4,757,958	+		EFB2_04533	0.83	-1.3
4,757,958	+		EFB2_04533	0.83	-0.2
4,757,958	+		EFB2_04533	0.83	+0.6
4,757,959	-		EFB2_04533	0.83	-1.1
4,757,959	-		EFB2_04533	0.83	+0.1
4,757,959	-		EFB2_04533	0.83	+1.2
4,757,959	-		EFB2_04533	0.83	+0.2
4,757,959	-		EFB2_04533	0.83	-1.6
4,757,959	-		EFB2_04533	0.83	-2.4
4,757,959	-		EFB2_04533	0.83	+0.4
4,757,959	-		EFB2_04533	0.83	-0.2
4,757,959	-		EFB2_04533	0.83	-0.6
4,757,959	-		EFB2_04533	0.83	-2.5
4,757,959	-		EFB2_04533	0.83	-0.2
4,757,959	-		EFB2_04533	0.83	-0.6
4,757,959	-		EFB2_04533	0.83	+0.5
4,757,962	+		EFB2_04533	0.83	-1.7
4,757,962	+		EFB2_04533	0.83	-0.8
4,757,962	+		EFB2_04533	0.83	+0.2
4,757,962	+		EFB2_04533	0.83	+1.5
4,757,962	+		EFB2_04533	0.83	+1.0
4,757,963	-		EFB2_04533	0.83	+0.8
4,757,963	-		EFB2_04533	0.83	-0.2
4,757,963	-		EFB2_04533	0.83	+0.8
4,757,963	-		EFB2_04533	0.83	+0.7
4,757,963	-		EFB2_04533	0.83	+1.4
4,757,963	-		EFB2_04533	0.83	-0.6
4,757,963	-		EFB2_04533	0.83	+1.5
4,757,963	-		EFB2_04533	0.83	+1.3
4,757,994	+		EFB2_04533	0.84	-0.3
4,757,995	-		EFB2_04533	0.84	-1.0
4,757,995	-		EFB2_04533	0.84	+1.1
4,758,048	+		EFB2_04533	0.86	-0.9
4,758,048	+		EFB2_04533	0.86	+0.3
4,758,049	-		EFB2_04533	0.86	-1.7
4,758,082	+		EFB2_04533	0.87	-0.2
4,758,082	+		EFB2_04533	0.87	-0.3
4,758,082	+		EFB2_04533	0.87	-1.7
4,758,082	+		EFB2_04533	0.87	-1.3
4,758,082	+		EFB2_04533	0.87	-0.6
4,758,082	+		EFB2_04533	0.87	-3.3
4,758,082	+		EFB2_04533	0.87	-1.1
4,758,082	+		EFB2_04533	0.87	+1.1
4,758,082	+		EFB2_04533	0.87	+0.5
4,758,082	+		EFB2_04533	0.87	-0.5
4,758,082	+		EFB2_04533	0.87	-1.4
4,758,082	+		EFB2_04533	0.87	-0.1
4,758,082	+		EFB2_04533	0.87	+1.5
4,758,082	+		EFB2_04533	0.87	-0.2
4,758,082	+		EFB2_04533	0.87	-1.0
4,758,082	+		EFB2_04533	0.87	-1.0
4,758,083	-		EFB2_04533	0.87	+1.6
4,758,083	-		EFB2_04533	0.87	+0.8
4,758,083	-		EFB2_04533	0.87	-1.1
4,758,083	-		EFB2_04533	0.87	-0.1
4,758,083	-		EFB2_04533	0.87	-2.5
4,758,083	-		EFB2_04533	0.87	-1.9
4,758,083	-		EFB2_04533	0.87	+2.0
4,758,083	-		EFB2_04533	0.87	+0.5
4,758,083	-		EFB2_04533	0.87	-0.7
4,758,083	-		EFB2_04533	0.87	-2.9
4,758,083	-		EFB2_04533	0.87	+0.4
4,758,083	-		EFB2_04533	0.87	+0.4
4,758,083	-		EFB2_04533	0.87	-2.3
4,758,083	-		EFB2_04533	0.87	-0.2
4,758,083	-		EFB2_04533	0.87	-0.1
4,758,184	+				+0.0
4,758,184	+				-0.8
4,758,184	+				+0.2
4,758,184	+				+0.5
4,758,184	+				-1.4
4,758,184	+				+0.6
4,758,184	+				-0.1
4,758,184	+				-1.6
4,758,184	+				-2.9
4,758,184	+				-0.8
4,758,184	+				-0.4
4,758,184	+				-1.9
4,758,184	+				-0.2
4,758,184	+				-0.9
4,758,184	+				+1.6
4,758,184	+				+0.1
4,758,185	-				-0.0
4,758,185	-				+0.2
4,758,185	-				+0.1
4,758,185	-				-1.5
4,758,185	-				+1.3
4,758,185	-				+0.6
4,758,185	-				-1.5
4,758,185	-				-1.0
4,758,185	-				+0.7
4,758,185	-				+0.2
4,758,185	-				+0.9
4,758,186	+				+0.2
4,758,186	+				-0.6
4,758,187	-				+0.5
4,758,187	-				-0.6
4,758,245	+				-2.6
4,758,245	+				-0.9
4,758,245	+				+0.3
4,758,245	+				-0.4
4,758,245	+				-0.1
4,758,246	-				+0.3
4,758,246	-				+0.6
4,758,246	-				-0.4
4,758,246	-				+0.2
4,758,246	-				-0.1
4,758,246	-				+0.1
4,758,252	+				-0.5
4,758,252	+				-3.5
4,758,253	-				-1.4
4,758,253	-				-0.7
4,758,253	-				-0.0
4,758,253	-				+1.0
4,758,253	-				-1.1
4,758,273	+				-0.5
4,758,273	+				-0.1
4,758,273	+				+0.5
4,758,273	+				+0.7
4,758,274	-				-0.0
4,758,274	-				-1.2
4,758,274	-				+1.4
4,758,274	-				-2.0
4,758,274	-				-2.5
4,758,274	-				+0.6
4,758,274	-				-1.3
4,758,274	-				-0.4
4,758,284	+				+0.4
4,758,284	+				-1.8
4,758,284	+				+1.9
4,758,284	+				+0.1
4,758,285	-				-2.4
4,758,285	-				-1.0
4,758,285	-				-2.0
4,758,417	+				+2.1
4,758,417	+				-0.4
4,758,445	+				+0.1
4,758,445	+				-0.4
4,758,540	+		EFB2_04534	0.16	+0.6
4,758,540	+		EFB2_04534	0.16	-0.6
4,758,540	+		EFB2_04534	0.16	-1.0
4,758,540	+		EFB2_04534	0.16	-2.7
4,758,540	+		EFB2_04534	0.16	-1.8
4,758,540	+		EFB2_04534	0.16	-0.4
4,758,541	-		EFB2_04534	0.17	+0.0
4,758,541	-		EFB2_04534	0.17	-1.6
4,758,558	+		EFB2_04534	0.21	+0.8
4,758,558	+		EFB2_04534	0.21	-1.7
4,758,558	+		EFB2_04534	0.21	-1.1
4,758,559	-		EFB2_04534	0.22	+1.8
4,758,559	-		EFB2_04534	0.22	-0.5
4,758,561	+		EFB2_04534	0.22	-0.6
4,758,561	+		EFB2_04534	0.22	+0.8
4,758,561	+		EFB2_04534	0.22	+0.6
4,758,561	+		EFB2_04534	0.22	-2.1
4,758,561	+		EFB2_04534	0.22	-0.4
4,758,562	-		EFB2_04534	0.22	-0.4
4,758,562	-		EFB2_04534	0.22	-1.1
4,758,562	-		EFB2_04534	0.22	-0.1
4,758,562	-		EFB2_04534	0.22	-1.7
4,758,562	-		EFB2_04534	0.22	+0.8
4,758,562	-		EFB2_04534	0.22	-0.7
4,758,594	+		EFB2_04534	0.31	+3.8
4,758,594	+		EFB2_04534	0.31	-1.1
4,758,594	+		EFB2_04534	0.31	+0.0
4,758,594	+		EFB2_04534	0.31	-0.4
4,758,594	+		EFB2_04534	0.31	+1.0
4,758,595	-		EFB2_04534	0.32	-0.1
4,758,595	-		EFB2_04534	0.32	-1.8
4,758,595	-		EFB2_04534	0.32	+0.7
4,758,595	-		EFB2_04534	0.32	+0.2
4,758,659	+		EFB2_04534	0.50	+1.4
4,758,659	+		EFB2_04534	0.50	-1.8
4,758,659	+		EFB2_04534	0.50	-0.9
4,758,660	-		EFB2_04534	0.50	+0.3
4,758,660	-		EFB2_04534	0.50	-1.4
4,758,660	-		EFB2_04534	0.50	-0.6
4,758,713	+		EFB2_04534	0.65	+0.5
4,758,813	+				-1.2
4,758,814	-				+3.2
4,758,818	+				+0.3
4,758,818	+				+0.1
4,758,818	+				+0.0
4,758,818	+				+0.4
4,758,818	+				+0.8
4,758,818	+				-1.5
4,758,818	+				-3.0
4,758,818	+				-2.7
4,758,818	+				+0.4
4,758,818	+				-2.8
4,758,818	+				-3.2
4,758,818	+				+0.2
4,758,818	+				-1.8
4,758,818	+				+2.0
4,758,818	+				+0.7
4,758,818	+				-0.5
4,758,818	+				+0.7
4,758,818	+				-1.2
4,758,818	+				+0.1
4,758,818	+				+0.5
4,758,818	+				+0.8
4,758,818	+				-0.8
4,758,818	+				-2.0
4,758,818	+				+0.7
4,758,818	+				-0.2
4,758,818	+				+1.4
4,758,818	+				+0.4
4,758,819	-				+0.9
4,758,819	-				-0.0
4,758,819	-				+1.7
4,758,819	-				-0.5
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