Strain Fitness in Escherichia fergusonii Becca around EFB2_03311

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
3,464,586	+				-2.2
3,464,586	+				-1.1
3,464,587	-				+0.9
3,464,587	-				-1.3
3,464,620	+				-2.1
3,464,622	+				+0.1
3,464,622	+				+0.7
3,464,623	-				+1.5
3,464,623	-				+0.6
3,464,625	+				-0.8
3,464,625	+				-1.5
3,464,625	+				+0.4
3,464,625	+				-0.7
3,464,625	+				-0.4
3,464,626	-				-0.8
3,464,626	-				+0.2
3,464,626	-				+0.9
3,464,626	-				+0.6
3,464,628	+				+0.6
3,464,628	+				-0.2
3,464,628	+				-1.6
3,464,628	+				-0.1
3,464,628	+				-0.8
3,464,628	+				+0.7
3,464,628	+				-2.6
3,464,628	+				+0.1
3,464,628	+				+0.4
3,464,629	-				-0.4
3,464,629	-				+0.2
3,464,629	-				+0.9
3,464,629	-				+1.0
3,464,629	-				+3.2
3,464,629	-				+1.7
3,464,654	+				-0.6
3,464,696	+		EFB2_03310	0.11	-2.3
3,464,696	+		EFB2_03310	0.11	+0.1
3,464,697	-		EFB2_03310	0.11	+0.9
3,464,697	-		EFB2_03310	0.11	-2.6
3,464,717	-		EFB2_03310	0.13	-0.7
3,464,728	+		EFB2_03310	0.14	-0.3
3,464,728	+		EFB2_03310	0.14	-1.1
3,464,729	-		EFB2_03310	0.14	-3.2
3,464,729	-		EFB2_03310	0.14	-0.3
3,464,729	-		EFB2_03310	0.14	+0.0
3,464,729	-		EFB2_03310	0.14	-2.1
3,464,729	-		EFB2_03310	0.14	+0.8
3,464,729	-		EFB2_03310	0.14	+0.4
3,464,825	+		EFB2_03310	0.23	+1.3
3,464,826	-		EFB2_03310	0.24	+1.2
3,464,826	-		EFB2_03310	0.24	-0.8
3,464,879	+		EFB2_03310	0.29	+0.9
3,464,879	+		EFB2_03310	0.29	+0.4
3,464,879	+		EFB2_03310	0.29	-1.1
3,464,879	+		EFB2_03310	0.29	-0.7
3,464,879	+		EFB2_03310	0.29	-1.1
3,464,879	+		EFB2_03310	0.29	-0.4
3,464,879	+		EFB2_03310	0.29	-0.5
3,464,880	-		EFB2_03310	0.29	+1.5
3,464,880	-		EFB2_03310	0.29	+0.7
3,464,957	+		EFB2_03310	0.37	-0.7
3,464,957	+		EFB2_03310	0.37	+0.1
3,464,957	+		EFB2_03310	0.37	+0.6
3,464,957	+		EFB2_03310	0.37	+0.1
3,464,957	+		EFB2_03310	0.37	-2.7
3,464,958	-		EFB2_03310	0.37	-2.6
3,464,958	-		EFB2_03310	0.37	-1.6
3,464,963	+		EFB2_03310	0.37	-0.0
3,464,963	+		EFB2_03310	0.37	+0.0
3,464,963	+		EFB2_03310	0.37	-0.9
3,464,963	+		EFB2_03310	0.37	+0.6
3,464,963	+		EFB2_03310	0.37	-0.7
3,464,964	-		EFB2_03310	0.37	-1.4
3,464,964	-		EFB2_03310	0.37	+0.2
3,464,964	-		EFB2_03310	0.37	-2.4
3,464,964	-		EFB2_03310	0.37	+2.3
3,464,978	+		EFB2_03310	0.39	+1.2
3,464,978	+		EFB2_03310	0.39	+0.0
3,464,978	+		EFB2_03310	0.39	-0.5
3,464,978	+		EFB2_03310	0.39	+0.1
3,464,978	+		EFB2_03310	0.39	-1.3
3,464,978	+		EFB2_03310	0.39	+1.4
3,464,978	+		EFB2_03310	0.39	+1.6
3,464,978	+		EFB2_03310	0.39	-1.1
3,464,978	+		EFB2_03310	0.39	-1.7
3,464,979	-		EFB2_03310	0.39	-0.3
3,464,979	-		EFB2_03310	0.39	-0.6
3,464,979	-		EFB2_03310	0.39	-0.4
3,464,979	-		EFB2_03310	0.39	+0.6
3,464,979	-		EFB2_03310	0.39	-2.9
3,464,979	-		EFB2_03310	0.39	+1.4
3,464,979	-		EFB2_03310	0.39	+0.4
3,465,088	+		EFB2_03310	0.50	-1.5
3,465,088	+		EFB2_03310	0.50	-1.0
3,465,089	-		EFB2_03310	0.50	-1.5
3,465,089	-		EFB2_03310	0.50	+0.1
3,465,089	-		EFB2_03310	0.50	-0.7
3,465,101	+		EFB2_03310	0.51	-2.9
3,465,246	+		EFB2_03310	0.66	-0.7
3,465,265	+		EFB2_03310	0.68	+0.9
3,465,265	+		EFB2_03310	0.68	-0.3
3,465,265	+		EFB2_03310	0.68	-2.1
3,465,265	+		EFB2_03310	0.68	+2.5
3,465,265	+		EFB2_03310	0.68	+0.8
3,465,265	+		EFB2_03310	0.68	-1.0
3,465,266	-		EFB2_03310	0.68	-1.3
3,465,266	-		EFB2_03310	0.68	-1.4
3,465,266	-		EFB2_03310	0.68	-0.4
3,465,282	+		EFB2_03310	0.69	+1.1
3,465,283	-		EFB2_03310	0.69	+0.8
3,465,283	-		EFB2_03310	0.69	+0.0
3,465,286	+		EFB2_03310	0.70	+1.4
3,465,286	+		EFB2_03310	0.70	-1.1
3,465,287	-		EFB2_03310	0.70	+0.3
3,465,287	-		EFB2_03310	0.70	-2.6
3,465,323	+		EFB2_03310	0.73	+0.8
3,465,323	+		EFB2_03310	0.73	+1.3
3,465,323	+		EFB2_03310	0.73	+0.9
3,465,324	-		EFB2_03310	0.74	-0.7
3,465,324	-		EFB2_03310	0.74	-2.3
3,465,324	-		EFB2_03310	0.74	+0.6
3,465,337	+		EFB2_03310	0.75	+0.5
3,465,337	+		EFB2_03310	0.75	-2.4
3,465,337	+		EFB2_03310	0.75	+0.1
3,465,338	-		EFB2_03310	0.75	-1.1
3,465,338	-		EFB2_03310	0.75	+0.5
3,465,338	-		EFB2_03310	0.75	-1.2
3,465,377	+		EFB2_03310	0.79	-1.8
3,465,377	+		EFB2_03310	0.79	+0.4
3,465,377	+		EFB2_03310	0.79	+1.6
3,465,377	+		EFB2_03310	0.79	+1.5
3,465,377	+		EFB2_03310	0.79	-0.4
3,465,377	+		EFB2_03310	0.79	-0.3
3,465,377	+		EFB2_03310	0.79	+0.6
3,465,377	+		EFB2_03310	0.79	+0.1
3,465,377	+		EFB2_03310	0.79	-1.8
3,465,378	-		EFB2_03310	0.79	-2.1
3,465,378	-		EFB2_03310	0.79	+0.0
3,465,378	-		EFB2_03310	0.79	+1.3
3,465,378	-		EFB2_03310	0.79	-2.8
3,465,378	-		EFB2_03310	0.79	-1.9
3,465,378	-		EFB2_03310	0.79	-2.0
3,465,378	-		EFB2_03310	0.79	+0.0
3,465,379	+		EFB2_03310	0.79	+0.8
3,465,446	-		EFB2_03310	0.86	-1.0
3,465,502	+				+0.9
3,465,502	+				+0.5
3,465,502	+				-1.8
3,465,502	+				-0.1
3,465,502	+				-0.6
3,465,502	+				+0.9
3,465,503	-				+2.1
3,465,503	-				+0.3
3,465,503	-				-1.7
3,465,678	+				+0.9
3,465,679	-				-1.4
3,465,745	+				-2.1
3,465,746	-				-0.2
3,465,746	-				+0.3
3,465,828	+		EFB2_03311	0.14	+0.4
3,465,828	+		EFB2_03311	0.14	-2.3
3,465,828	+		EFB2_03311	0.14	+0.3
3,465,828	+		EFB2_03311	0.14	+1.3
3,465,828	+		EFB2_03311	0.14	-0.8
3,465,829	-		EFB2_03311	0.14	-0.8
3,465,829	-		EFB2_03311	0.14	+0.5
3,465,829	-		EFB2_03311	0.14	+0.2
3,465,829	-		EFB2_03311	0.14	-1.7
3,465,829	-		EFB2_03311	0.14	+1.3
3,465,829	-		EFB2_03311	0.14	-2.6
3,465,829	-		EFB2_03311	0.14	-1.1
3,465,829	-		EFB2_03311	0.14	+0.6
3,465,829	-		EFB2_03311	0.14	-0.3
3,465,830	+		EFB2_03311	0.14	+0.4
3,465,830	+		EFB2_03311	0.14	+0.5
3,465,830	+		EFB2_03311	0.14	+0.5
3,465,830	+		EFB2_03311	0.14	-2.7
3,465,830	+		EFB2_03311	0.14	-0.8
3,465,830	+		EFB2_03311	0.14	+2.3
3,465,830	+		EFB2_03311	0.14	+1.5
3,465,830	+		EFB2_03311	0.14	-0.3
3,465,830	+		EFB2_03311	0.14	+0.4
3,465,830	+		EFB2_03311	0.14	-1.2
3,465,830	+		EFB2_03311	0.14	-1.8
3,465,830	+		EFB2_03311	0.14	+0.1
3,465,831	-		EFB2_03311	0.15	+0.5
3,465,831	-		EFB2_03311	0.15	-1.9
3,465,831	-		EFB2_03311	0.15	-0.8
3,465,831	-		EFB2_03311	0.15	+0.1
3,465,831	-		EFB2_03311	0.15	-2.3
3,465,852	+		EFB2_03311	0.16	+1.2
3,465,853	-		EFB2_03311	0.16	-1.0
3,465,853	-		EFB2_03311	0.16	-1.0
3,465,853	-		EFB2_03311	0.16	+0.3
3,465,853	-		EFB2_03311	0.16	+1.3
3,465,853	-		EFB2_03311	0.16	-0.8
3,465,853	-		EFB2_03311	0.16	+1.7
3,465,953	+		EFB2_03311	0.22	+0.4
3,465,953	+		EFB2_03311	0.22	+0.3
3,465,953	+		EFB2_03311	0.22	+0.3
3,465,953	+		EFB2_03311	0.22	-0.1
3,465,953	+		EFB2_03311	0.22	-0.1
3,465,954	-		EFB2_03311	0.22	+1.2
3,465,954	-		EFB2_03311	0.22	-1.3
3,465,954	-		EFB2_03311	0.22	-0.9
3,465,954	-		EFB2_03311	0.22	+1.7
3,465,954	-		EFB2_03311	0.22	-1.6
3,465,954	-		EFB2_03311	0.22	+1.2
3,465,954	-		EFB2_03311	0.22	+0.4
3,466,031	+		EFB2_03311	0.26	-2.0
3,466,032	-		EFB2_03311	0.26	-0.5
3,466,039	+		EFB2_03311	0.26	-1.1
3,466,091	+		EFB2_03311	0.29	+0.0
3,466,091	+		EFB2_03311	0.29	-1.0
3,466,092	-		EFB2_03311	0.30	-1.8
3,466,092	-		EFB2_03311	0.30	+0.7
3,466,092	-		EFB2_03311	0.30	-0.5
3,466,147	+		EFB2_03311	0.33	+2.2
3,466,147	+		EFB2_03311	0.33	+1.0
3,466,147	+		EFB2_03311	0.33	+1.8
3,466,147	+		EFB2_03311	0.33	-0.3
3,466,147	+		EFB2_03311	0.33	+0.3
3,466,147	+		EFB2_03311	0.33	-2.1
3,466,148	-		EFB2_03311	0.33	+0.3
3,466,148	-		EFB2_03311	0.33	-0.7
3,466,148	-		EFB2_03311	0.33	-0.2
3,466,148	-		EFB2_03311	0.33	-0.3
3,466,148	-		EFB2_03311	0.33	-1.8
3,466,160	+		EFB2_03311	0.33	+0.3
3,466,161	-		EFB2_03311	0.34	+1.2
3,466,161	-		EFB2_03311	0.34	+0.7
3,466,161	-		EFB2_03311	0.34	+0.7
3,466,167	+		EFB2_03311	0.34	+0.4
3,466,167	+		EFB2_03311	0.34	+0.9
3,466,167	+		EFB2_03311	0.34	-1.0
3,466,167	+		EFB2_03311	0.34	-1.3
3,466,168	-		EFB2_03311	0.34	-1.5
3,466,168	-		EFB2_03311	0.34	+0.9
3,466,168	-		EFB2_03311	0.34	-0.8
3,466,201	+		EFB2_03311	0.36	-2.3
3,466,202	-		EFB2_03311	0.36	-1.5
3,466,202	-		EFB2_03311	0.36	-0.1
3,466,227	+		EFB2_03311	0.37	-1.7
3,466,409	+		EFB2_03311	0.48	+1.3
3,466,409	+		EFB2_03311	0.48	+0.6
3,466,454	+		EFB2_03311	0.50	+2.5
3,466,454	+		EFB2_03311	0.50	-1.5
3,466,454	+		EFB2_03311	0.50	-0.4
3,466,454	+		EFB2_03311	0.50	-0.2
3,466,454	+		EFB2_03311	0.50	-0.5
3,466,454	+		EFB2_03311	0.50	+1.2
3,466,454	+		EFB2_03311	0.50	+0.1
3,466,454	+		EFB2_03311	0.50	-3.3
3,466,478	+		EFB2_03311	0.52	+0.1
3,466,479	-		EFB2_03311	0.52	-0.7
3,466,528	+		EFB2_03311	0.55	+0.9
3,466,528	+		EFB2_03311	0.55	-0.4
3,466,528	+		EFB2_03311	0.55	+0.3
3,466,528	+		EFB2_03311	0.55	-0.5
3,466,528	+		EFB2_03311	0.55	+0.3
3,466,529	-		EFB2_03311	0.55	+2.0
3,466,529	-		EFB2_03311	0.55	+0.7
3,466,529	-		EFB2_03311	0.55	-1.8
3,466,531	+		EFB2_03311	0.55	-0.4
3,466,531	+		EFB2_03311	0.55	+0.1
3,466,531	+		EFB2_03311	0.55	-0.9
3,466,531	+		EFB2_03311	0.55	+1.6
3,466,531	+		EFB2_03311	0.55	+2.5
3,466,531	+		EFB2_03311	0.55	+0.4
3,466,531	+		EFB2_03311	0.55	+0.8
3,466,531	+		EFB2_03311	0.55	+1.3
3,466,531	+		EFB2_03311	0.55	-2.1
3,466,531	+		EFB2_03311	0.55	-2.7
3,466,531	+		EFB2_03311	0.55	-1.3
3,466,531	+		EFB2_03311	0.55	+0.6
3,466,531	+		EFB2_03311	0.55	-0.3
3,466,531	+		EFB2_03311	0.55	+0.7
3,466,531	+		EFB2_03311	0.55	-0.7
3,466,531	+		EFB2_03311	0.55	-1.0
3,466,531	+		EFB2_03311	0.55	-0.3
3,466,531	+		EFB2_03311	0.55	-0.8
3,466,531	+		EFB2_03311	0.55	-1.9
3,466,531	+		EFB2_03311	0.55	+0.3
3,466,531	+		EFB2_03311	0.55	-0.6
3,466,531	+		EFB2_03311	0.55	-1.5
3,466,531	+		EFB2_03311	0.55	-2.8
3,466,532	-		EFB2_03311	0.55	-1.4
3,466,532	-		EFB2_03311	0.55	-3.1
3,466,532	-		EFB2_03311	0.55	-0.0
3,466,532	-		EFB2_03311	0.55	-0.5
3,466,532	-		EFB2_03311	0.55	+0.0
3,466,532	-		EFB2_03311	0.55	+0.0
3,466,532	-		EFB2_03311	0.55	-1.3
3,466,532	-		EFB2_03311	0.55	+1.6
3,466,532	-		EFB2_03311	0.55	-1.8
3,466,532	-		EFB2_03311	0.55	+0.1
3,466,532	-		EFB2_03311	0.55	-0.5
3,466,532	-		EFB2_03311	0.55	-1.1
3,466,532	-		EFB2_03311	0.55	-1.3
3,466,532	-		EFB2_03311	0.55	+1.2
3,466,532	-		EFB2_03311	0.55	-0.7
3,466,532	-		EFB2_03311	0.55	+1.1
3,466,532	-		EFB2_03311	0.55	-2.3
3,466,532	-		EFB2_03311	0.55	+1.2
3,466,532	-		EFB2_03311	0.55	+1.3
3,466,532	-		EFB2_03311	0.55	+0.0
3,466,532	-		EFB2_03311	0.55	-0.3
3,466,532	-		EFB2_03311	0.55	-0.7
3,466,532	-		EFB2_03311	0.55	-0.3
3,466,535	+		EFB2_03311	0.55	+2.0
3,466,535	+		EFB2_03311	0.55	+0.3
3,466,535	+		EFB2_03311	0.55	-0.4
3,466,535	+		EFB2_03311	0.55	+1.0
3,466,535	+		EFB2_03311	0.55	+0.4
3,466,535	+		EFB2_03311	0.55	-0.5
3,466,535	+		EFB2_03311	0.55	+1.0
3,466,535	+		EFB2_03311	0.55	-0.1
3,466,535	+		EFB2_03311	0.55	+1.0
3,466,535	+		EFB2_03311	0.55	-1.8
3,466,535	+		EFB2_03311	0.55	-0.4
3,466,535	+		EFB2_03311	0.55	+0.3
3,466,535	+		EFB2_03311	0.55	+0.3
3,466,535	+		EFB2_03311	0.55	-0.7
3,466,535	+		EFB2_03311	0.55	-0.7
3,466,535	+		EFB2_03311	0.55	-1.5
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