Strain Fitness in Escherichia fergusonii Becca around EFB2_03180

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
3,337,481	-		EFB2_03179	0.57	+2.3
3,337,481	-		EFB2_03179	0.57	+0.4
3,337,481	-		EFB2_03179	0.57	-0.8
3,337,497	+		EFB2_03179	0.58	+0.0
3,337,497	+		EFB2_03179	0.58	+1.1
3,337,497	+		EFB2_03179	0.58	-2.0
3,337,497	+		EFB2_03179	0.58	+1.6
3,337,497	+		EFB2_03179	0.58	+1.3
3,337,498	-		EFB2_03179	0.58	-0.4
3,337,601	+		EFB2_03179	0.63	+0.1
3,337,602	-		EFB2_03179	0.63	-0.2
3,337,602	-		EFB2_03179	0.63	-0.6
3,337,616	+		EFB2_03179	0.63	-2.3
3,337,617	-		EFB2_03179	0.63	+0.9
3,337,617	-		EFB2_03179	0.63	-0.5
3,337,617	-		EFB2_03179	0.63	-0.3
3,337,617	-		EFB2_03179	0.63	-0.7
3,337,617	-		EFB2_03179	0.63	-1.0
3,337,617	-		EFB2_03179	0.63	-1.2
3,337,617	-		EFB2_03179	0.63	+1.0
3,337,617	-		EFB2_03179	0.63	+0.6
3,337,617	-		EFB2_03179	0.63	-1.9
3,337,649	+		EFB2_03179	0.65	-0.3
3,337,650	-		EFB2_03179	0.65	-1.6
3,337,650	-		EFB2_03179	0.65	-0.8
3,337,650	-		EFB2_03179	0.65	+1.5
3,337,714	+		EFB2_03179	0.68	+0.6
3,337,714	+		EFB2_03179	0.68	+0.7
3,337,715	-		EFB2_03179	0.68	-0.6
3,337,715	-		EFB2_03179	0.68	+0.7
3,337,715	-		EFB2_03179	0.68	-0.3
3,337,715	-		EFB2_03179	0.68	+0.3
3,337,722	-		EFB2_03179	0.68	+0.0
3,337,793	+		EFB2_03179	0.71	-1.0
3,337,793	+		EFB2_03179	0.71	-0.1
3,337,794	-		EFB2_03179	0.71	+0.5
3,337,833	-		EFB2_03179	0.73	+0.5
3,337,856	+		EFB2_03179	0.74	+0.6
3,337,856	+		EFB2_03179	0.74	+1.5
3,337,856	+		EFB2_03179	0.74	-1.4
3,337,946	+		EFB2_03179	0.78	-0.5
3,337,946	+		EFB2_03179	0.78	-1.8
3,337,946	+		EFB2_03179	0.78	+0.6
3,337,946	+		EFB2_03179	0.78	-0.5
3,337,947	-		EFB2_03179	0.78	-0.2
3,337,947	-		EFB2_03179	0.78	-1.3
3,337,947	-		EFB2_03179	0.78	-1.3
3,337,947	-		EFB2_03179	0.78	-0.3
3,337,947	-		EFB2_03179	0.78	-0.1
3,337,947	-		EFB2_03179	0.78	+0.3
3,337,947	-		EFB2_03179	0.78	+0.2
3,337,947	-		EFB2_03179	0.78	-0.7
3,337,947	-		EFB2_03179	0.78	-1.8
3,337,947	-		EFB2_03179	0.78	+0.1
3,337,947	-		EFB2_03179	0.78	+0.0
3,338,022	-		EFB2_03179	0.81	-2.6
3,338,039	+		EFB2_03179	0.82	+0.7
3,338,039	+		EFB2_03179	0.82	-1.4
3,338,039	+		EFB2_03179	0.82	-1.5
3,338,040	-		EFB2_03179	0.82	-0.8
3,338,086	+		EFB2_03179	0.84	+2.0
3,338,086	+		EFB2_03179	0.84	+1.1
3,338,086	+		EFB2_03179	0.84	+0.3
3,338,086	+		EFB2_03179	0.84	-0.7
3,338,087	-		EFB2_03179	0.84	-1.1
3,338,087	-		EFB2_03179	0.84	+0.3
3,338,117	+		EFB2_03179	0.85	-1.8
3,338,118	-		EFB2_03179	0.85	+0.5
3,338,141	+		EFB2_03179	0.86	+1.0
3,338,190	+		EFB2_03179	0.89	-0.5
3,338,190	+		EFB2_03179	0.89	-0.8
3,338,190	+		EFB2_03179	0.89	+0.7
3,338,191	-		EFB2_03179	0.89	-0.3
3,338,191	-		EFB2_03179	0.89	+2.0
3,338,191	-		EFB2_03179	0.89	-2.4
3,338,191	-		EFB2_03179	0.89	+0.2
3,338,267	+				-0.5
3,338,267	+				-0.1
3,338,268	-				-1.0
3,338,268	-				-0.9
3,338,359	-				-1.3
3,338,378	+				-0.6
3,338,379	-				-1.9
3,338,379	-				+0.3
3,338,379	-				+1.4
3,338,417	+				+0.4
3,338,417	+				+0.7
3,338,418	-				+0.5
3,338,418	-				+1.9
3,338,421	+				+0.1
3,338,422	-				-1.6
3,338,422	-				+0.1
3,338,450	+				-0.8
3,338,450	+				-0.5
3,338,451	-				+0.1
3,338,451	-				+2.0
3,338,451	-				-1.3
3,338,451	-				-2.2
3,338,451	-				+0.7
3,338,451	-				+0.0
3,338,471	-				-1.6
3,338,498	+				-1.0
3,338,498	+				+3.9
3,338,498	+				+1.4
3,338,498	+				-0.7
3,338,498	+				+0.5
3,338,498	+				+0.7
3,338,498	+				+0.9
3,338,499	-				-0.6
3,338,499	-				+0.9
3,338,499	-				-2.0
3,338,499	-				-0.8
3,338,499	-				+1.9
3,338,499	-				+0.3
3,338,499	-				-2.1
3,338,499	-				+0.3
3,338,499	-				-0.7
3,338,499	-				+0.4
3,338,530	+		EFB2_03180	0.15	-1.3
3,338,530	+		EFB2_03180	0.15	-2.4
3,338,530	+		EFB2_03180	0.15	-0.7
3,338,531	-		EFB2_03180	0.16	+3.3
3,338,531	-		EFB2_03180	0.16	+1.6
3,338,531	-		EFB2_03180	0.16	+0.4
3,338,531	-		EFB2_03180	0.16	-0.2
3,338,573	+		EFB2_03180	0.29	-1.4
3,338,603	-		EFB2_03180	0.38	+1.3
3,338,603	-		EFB2_03180	0.38	-1.3
3,338,637	+		EFB2_03180	0.49	-1.0
3,338,637	+		EFB2_03180	0.49	+1.0
3,338,637	+		EFB2_03180	0.49	-1.7
3,338,637	+		EFB2_03180	0.49	+1.2
3,338,637	+		EFB2_03180	0.49	-0.7
3,338,637	+		EFB2_03180	0.49	-0.3
3,338,637	+		EFB2_03180	0.49	+0.3
3,338,637	+		EFB2_03180	0.49	-0.9
3,338,638	-		EFB2_03180	0.49	-1.7
3,338,638	-		EFB2_03180	0.49	+2.1
3,338,638	-		EFB2_03180	0.49	-2.1
3,338,638	-		EFB2_03180	0.49	-1.0
3,338,638	-		EFB2_03180	0.49	+0.7
3,338,638	-		EFB2_03180	0.49	+0.6
3,338,638	-		EFB2_03180	0.49	+1.2
3,338,638	-		EFB2_03180	0.49	-0.6
3,338,638	-		EFB2_03180	0.49	+0.6
3,338,638	-		EFB2_03180	0.49	+0.3
3,338,638	-		EFB2_03180	0.49	-0.3
3,338,638	-		EFB2_03180	0.49	+1.0
3,338,638	-		EFB2_03180	0.49	+0.5
3,338,644	+		EFB2_03180	0.51	+0.0
3,338,644	+		EFB2_03180	0.51	+0.7
3,338,644	+		EFB2_03180	0.51	-1.7
3,338,644	+		EFB2_03180	0.51	+1.5
3,338,644	+		EFB2_03180	0.51	-1.5
3,338,645	-		EFB2_03180	0.51	-0.0
3,338,645	-		EFB2_03180	0.51	-3.1
3,338,645	-		EFB2_03180	0.51	-0.7
3,338,645	-		EFB2_03180	0.51	+4.8
3,338,645	-		EFB2_03180	0.51	+1.0
3,338,645	-		EFB2_03180	0.51	-1.4
3,338,645	-		EFB2_03180	0.51	+1.1
3,338,645	-		EFB2_03180	0.51	+0.1
3,338,645	-		EFB2_03180	0.51	-1.2
3,338,645	-		EFB2_03180	0.51	+1.7
3,338,662	-		EFB2_03180	0.56	+0.4
3,338,690	+		EFB2_03180	0.65	-1.3
3,338,690	+		EFB2_03180	0.65	+1.5
3,338,690	+		EFB2_03180	0.65	+1.3
3,338,690	+		EFB2_03180	0.65	+2.8
3,338,690	+		EFB2_03180	0.65	-2.1
3,338,691	-		EFB2_03180	0.65	-2.3
3,338,691	-		EFB2_03180	0.65	+0.9
3,338,691	-		EFB2_03180	0.65	-0.7
3,338,691	-		EFB2_03180	0.65	-2.5
3,338,691	-		EFB2_03180	0.65	+0.7
3,338,691	-		EFB2_03180	0.65	+0.1
3,338,691	-		EFB2_03180	0.65	-0.5
3,338,691	-		EFB2_03180	0.65	+0.4
3,338,691	-		EFB2_03180	0.65	+0.0
3,338,691	-		EFB2_03180	0.65	+0.7
3,338,691	-		EFB2_03180	0.65	-1.0
3,338,692	+		EFB2_03180	0.66	-0.7
3,338,692	+		EFB2_03180	0.66	+1.0
3,338,692	+		EFB2_03180	0.66	+1.7
3,338,692	+		EFB2_03180	0.66	+0.7
3,338,692	+		EFB2_03180	0.66	+0.8
3,338,692	+		EFB2_03180	0.66	-0.1
3,338,693	-		EFB2_03180	0.66	-2.0
3,338,693	-		EFB2_03180	0.66	-0.5
3,338,693	-		EFB2_03180	0.66	-1.3
3,338,693	-		EFB2_03180	0.66	-3.0
3,338,693	-		EFB2_03180	0.66	-2.4
3,338,693	-		EFB2_03180	0.66	+3.9
3,338,693	-		EFB2_03180	0.66	+0.5
3,338,693	-		EFB2_03180	0.66	-0.2
3,338,693	-		EFB2_03180	0.66	-0.2
3,338,693	-		EFB2_03180	0.66	-0.2
3,338,693	-		EFB2_03180	0.66	-1.0
3,338,693	-		EFB2_03180	0.66	-3.1
3,338,706	+		EFB2_03180	0.70	-2.1
3,338,706	+		EFB2_03180	0.70	-2.4
3,338,706	+		EFB2_03180	0.70	+1.0
3,338,707	-		EFB2_03180	0.70	-0.3
3,338,707	-		EFB2_03180	0.70	+0.1
3,338,707	-		EFB2_03180	0.70	+0.9
3,338,707	-		EFB2_03180	0.70	-0.8
3,338,707	-		EFB2_03180	0.70	-0.9
3,338,707	-		EFB2_03180	0.70	+0.6
3,338,707	-		EFB2_03180	0.70	-1.5
3,338,707	-		EFB2_03180	0.70	-0.3
3,338,707	-		EFB2_03180	0.70	-0.5
3,338,707	-		EFB2_03180	0.70	-2.5
3,338,709	+		EFB2_03180	0.71	-0.6
3,338,709	+		EFB2_03180	0.71	+0.3
3,338,709	+		EFB2_03180	0.71	-1.2
3,338,709	+		EFB2_03180	0.71	-0.7
3,338,709	+		EFB2_03180	0.71	-0.4
3,338,710	-		EFB2_03180	0.71	-0.6
3,338,710	-		EFB2_03180	0.71	-0.8
3,338,710	-		EFB2_03180	0.71	+0.9
3,338,710	-		EFB2_03180	0.71	-1.5
3,338,710	-		EFB2_03180	0.71	-2.8
3,338,710	-		EFB2_03180	0.71	+0.1
3,338,710	-		EFB2_03180	0.71	-1.1
3,338,717	+		EFB2_03180	0.74	-2.2
3,338,717	+		EFB2_03180	0.74	+0.1
3,338,717	+		EFB2_03180	0.74	-0.7
3,338,717	+		EFB2_03180	0.74	+1.3
3,338,718	-		EFB2_03180	0.74	-2.9
3,338,718	-		EFB2_03180	0.74	-0.4
3,338,718	-		EFB2_03180	0.74	+0.4
3,338,718	-		EFB2_03180	0.74	+1.3
3,338,718	-		EFB2_03180	0.74	+0.5
3,338,719	+		EFB2_03180	0.74	-1.8
3,338,719	+		EFB2_03180	0.74	-2.1
3,338,719	+		EFB2_03180	0.74	-1.1
3,338,719	+		EFB2_03180	0.74	+0.1
3,338,719	+		EFB2_03180	0.74	+0.2
3,338,719	+		EFB2_03180	0.74	+1.3
3,338,719	+		EFB2_03180	0.74	+0.0
3,338,719	+		EFB2_03180	0.74	-0.3
3,338,719	+		EFB2_03180	0.74	+1.0
3,338,719	+		EFB2_03180	0.74	+2.9
3,338,719	+		EFB2_03180	0.74	-2.0
3,338,719	+		EFB2_03180	0.74	+1.2
3,338,720	-		EFB2_03180	0.74	-0.5
3,338,720	-		EFB2_03180	0.74	-0.4
3,338,720	-		EFB2_03180	0.74	+0.3
3,338,720	-		EFB2_03180	0.74	-0.5
3,338,720	-		EFB2_03180	0.74	+0.2
3,338,720	-		EFB2_03180	0.74	+0.8
3,338,720	-		EFB2_03180	0.74	-1.6
3,338,720	-		EFB2_03180	0.74	+0.3
3,338,720	-		EFB2_03180	0.74	-1.9
3,338,720	-		EFB2_03180	0.74	-1.0
3,338,720	-		EFB2_03180	0.74	-2.2
3,338,720	-		EFB2_03180	0.74	+2.9
3,338,720	-		EFB2_03180	0.74	+0.2
3,338,720	-		EFB2_03180	0.74	+0.2
3,338,720	-		EFB2_03180	0.74	-2.2
3,338,720	-		EFB2_03180	0.74	-0.8
3,338,720	-		EFB2_03180	0.74	+0.6
3,338,723	+		EFB2_03180	0.75	+1.0
3,338,723	+		EFB2_03180	0.75	+3.9
3,338,723	+		EFB2_03180	0.75	+2.1
3,338,723	+		EFB2_03180	0.75	+1.2
3,338,723	+		EFB2_03180	0.75	+2.3
3,338,723	+		EFB2_03180	0.75	+0.2
3,338,723	+		EFB2_03180	0.75	+1.5
3,338,723	+		EFB2_03180	0.75	+0.3
3,338,723	+		EFB2_03180	0.75	-1.2
3,338,723	+		EFB2_03180	0.75	-0.2
3,338,723	+		EFB2_03180	0.75	-0.5
3,338,723	+		EFB2_03180	0.75	-0.2
3,338,723	+		EFB2_03180	0.75	+0.7
3,338,723	+		EFB2_03180	0.75	-0.3
3,338,723	+		EFB2_03180	0.75	+1.0
3,338,723	+		EFB2_03180	0.75	-2.4
3,338,723	+		EFB2_03180	0.75	-0.7
3,338,723	+		EFB2_03180	0.75	-2.6
3,338,723	+		EFB2_03180	0.75	+0.9
3,338,723	+		EFB2_03180	0.75	-0.3
3,338,723	+		EFB2_03180	0.75	+1.2
3,338,723	+		EFB2_03180	0.75	+2.6
3,338,723	+		EFB2_03180	0.75	+1.7
3,338,723	+		EFB2_03180	0.75	+1.1
3,338,723	+		EFB2_03180	0.75	-1.5
3,338,723	+		EFB2_03180	0.75	-1.8
3,338,723	+		EFB2_03180	0.75	-0.4
3,338,723	+		EFB2_03180	0.75	-0.8
3,338,723	+		EFB2_03180	0.75	+1.5
3,338,723	+		EFB2_03180	0.75	+1.1
3,338,723	+		EFB2_03180	0.75	+0.7
3,338,723	+		EFB2_03180	0.75	-2.0
3,338,723	+		EFB2_03180	0.75	+0.3
3,338,723	+		EFB2_03180	0.75	-1.5
3,338,723	+		EFB2_03180	0.75	-2.0
3,338,723	+		EFB2_03180	0.75	-1.5
3,338,723	+		EFB2_03180	0.75	+0.2
3,338,723	+		EFB2_03180	0.75	+1.2
3,338,723	+		EFB2_03180	0.75	-0.0
3,338,723	+		EFB2_03180	0.75	-0.6
3,338,723	+		EFB2_03180	0.75	+3.3
3,338,723	+		EFB2_03180	0.75	-0.2
3,338,723	+		EFB2_03180	0.75	+0.0
3,338,723	+		EFB2_03180	0.75	+0.5
3,338,723	+		EFB2_03180	0.75	+0.5
3,338,723	+		EFB2_03180	0.75	-0.5
3,338,723	+		EFB2_03180	0.75	-0.7
3,338,724	-		EFB2_03180	0.76	-0.4
3,338,724	-		EFB2_03180	0.76	-1.1
3,338,724	-		EFB2_03180	0.76	-3.0
3,338,724	-		EFB2_03180	0.76	+0.4
3,338,724	-		EFB2_03180	0.76	-0.4
3,338,724	-		EFB2_03180	0.76	+0.2
3,338,724	-		EFB2_03180	0.76	+0.6
3,338,724	-		EFB2_03180	0.76	-1.6
3,338,724	-		EFB2_03180	0.76	+0.3
3,338,724	-		EFB2_03180	0.76	-2.0
3,338,724	-		EFB2_03180	0.76	-0.5
3,338,724	-		EFB2_03180	0.76	-2.0
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3,339,741	+		EFB2_03182	0.16	+0.5
3,339,741	+		EFB2_03182	0.16	-0.2
3,339,741	+		EFB2_03182	0.16	-1.3
3,339,741	+		EFB2_03182	0.16	+0.5
3,339,741	+		EFB2_03182	0.16	-2.0
3,339,742	-		EFB2_03182	0.16	-2.9
3,339,742	-		EFB2_03182	0.16	-1.4
3,339,742	-		EFB2_03182	0.16	-0.4
3,339,742	-		EFB2_03182	0.16	-1.6
3,339,742	-		EFB2_03182	0.16	-0.4
3,339,742	-		EFB2_03182	0.16	-0.9
3,339,742	-		EFB2_03182	0.16	+1.8
3,339,742	-		EFB2_03182	0.16	+0.2
3,339,748	+		EFB2_03182	0.17	-0.7
3,339,748	+		EFB2_03182	0.17	-0.9
3,339,749	-		EFB2_03182	0.17	+0.7
3,339,749	-		EFB2_03182	0.17	+0.6
3,339,749	-		EFB2_03182	0.17	+0.3
3,339,766	+		EFB2_03182	0.18	+1.7