Strain Fitness in Escherichia fergusonii Becca around EFB2_02708

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
2,866,469	+		EFB2_02706	0.70	+1.7
2,866,469	+		EFB2_02706	0.70	-2.3
2,866,469	+		EFB2_02706	0.70	+1.1
2,866,470	-		EFB2_02706	0.71	-1.7
2,866,470	-		EFB2_02706	0.71	+1.3
2,866,470	-		EFB2_02706	0.71	+1.5
2,866,470	-		EFB2_02706	0.71	-0.5
2,866,470	-		EFB2_02706	0.71	+2.3
2,866,476	+		EFB2_02706	0.71	-2.4
2,866,476	+		EFB2_02706	0.71	+0.3
2,866,477	-		EFB2_02706	0.71	-0.5
2,866,477	-		EFB2_02706	0.71	-2.4
2,866,575	+		EFB2_02706	0.78	+1.4
2,866,575	+		EFB2_02706	0.78	-1.6
2,866,575	+		EFB2_02706	0.78	+0.5
2,866,575	+		EFB2_02706	0.78	-1.5
2,866,575	+		EFB2_02706	0.78	-1.0
2,866,576	-		EFB2_02706	0.78	+1.8
2,866,576	-		EFB2_02706	0.78	-2.3
2,866,576	-		EFB2_02706	0.78	+0.5
2,866,576	-		EFB2_02706	0.78	+2.2
2,866,576	-		EFB2_02706	0.78	-1.5
2,866,576	-		EFB2_02706	0.78	+1.7
2,866,576	-		EFB2_02706	0.78	-0.1
2,866,576	-		EFB2_02706	0.78	-3.2
2,866,576	-		EFB2_02706	0.78	-2.2
2,866,576	-		EFB2_02706	0.78	+0.2
2,866,598	+		EFB2_02706	0.80	+1.4
2,866,599	-		EFB2_02706	0.80	-0.3
2,866,599	-		EFB2_02706	0.80	+1.2
2,866,650	-		EFB2_02706	0.83	-0.8
2,866,743	+				-0.3
2,866,743	+				-0.3
2,866,743	+				+0.5
2,866,744	-				-1.3
2,866,766	+				-1.4
2,866,766	+				-0.0
2,866,766	+				+1.9
2,866,766	+				-2.5
2,866,766	+				+5.1
2,866,769	+				-0.7
2,866,769	+				+1.9
2,866,770	-				-1.6
2,866,770	-				+0.9
2,866,802	+				-1.0
2,866,802	+				-1.6
2,866,802	+				-1.6
2,866,803	-				+1.5
2,866,803	-				-1.8
2,866,803	-				+1.4
2,866,803	-				-2.0
2,866,803	-				+0.7
2,866,803	-				+2.5
2,866,803	-				-1.5
2,866,803	-				-1.4
2,866,814	+				+0.6
2,866,815	-				-0.3
2,866,842	+				+5.1
2,866,842	+				-0.4
2,866,843	-				-1.0
2,866,843	-				+0.6
2,866,847	-				+1.3
2,866,890	-				-0.7
2,866,916	-				+1.5
2,866,953	+				+0.5
2,867,019	+				-1.6
2,867,019	+				+0.8
2,867,020	-				-1.4
2,867,020	-				-1.8
2,867,020	-				+0.9
2,867,024	+				-0.4
2,867,024	+				-0.3
2,867,024	+				-1.0
2,867,024	+				+4.0
2,867,025	-				+2.2
2,867,025	-				-0.3
2,867,025	-				-0.7
2,867,025	-				+1.8
2,867,039	+				-0.3
2,867,039	+				+1.0
2,867,040	-				-0.0
2,867,040	-				+0.7
2,867,051	+				+1.4
2,867,060	-				-1.1
2,867,060	-				-0.5
2,867,060	-				+3.0
2,867,102	-		EFB2_02707	0.10	+1.5
2,867,147	+		EFB2_02707	0.23	-0.4
2,867,148	-		EFB2_02707	0.23	-0.5
2,867,239	+		EFB2_02707	0.49	-2.3
2,867,239	+		EFB2_02707	0.49	+1.7
2,867,239	+		EFB2_02707	0.49	+2.0
2,867,239	+		EFB2_02707	0.49	+0.9
2,867,240	-		EFB2_02707	0.49	+1.2
2,867,283	-		EFB2_02707	0.62	+0.7
2,867,283	-		EFB2_02707	0.62	-1.8
2,867,326	-		EFB2_02707	0.74	+0.8
2,867,326	-		EFB2_02707	0.74	+0.5
2,867,328	+		EFB2_02707	0.74	+1.3
2,867,328	+		EFB2_02707	0.74	+1.5
2,867,328	+		EFB2_02707	0.74	+2.5
2,867,328	+		EFB2_02707	0.74	+0.2
2,867,329	-		EFB2_02707	0.75	+0.7
2,867,329	-		EFB2_02707	0.75	-2.5
2,867,446	+				-1.2
2,867,447	-				-0.5
2,867,447	-				-1.6
2,867,460	-				-0.8
2,867,480	+				+1.2
2,867,569	+		EFB2_02708	0.15	+1.7
2,867,570	-		EFB2_02708	0.15	-0.3
2,867,595	+		EFB2_02708	0.19	-1.3
2,867,596	-		EFB2_02708	0.19	-0.3
2,867,596	-		EFB2_02708	0.19	-0.1
2,867,596	-		EFB2_02708	0.19	-0.2
2,867,596	-		EFB2_02708	0.19	-0.1
2,867,645	+		EFB2_02708	0.26	-1.6
2,867,645	+		EFB2_02708	0.26	-1.3
2,867,645	+		EFB2_02708	0.26	+0.6
2,867,645	+		EFB2_02708	0.26	-0.3
2,867,645	+		EFB2_02708	0.26	+2.0
2,867,646	-		EFB2_02708	0.26	+1.4
2,867,646	-		EFB2_02708	0.26	+1.5
2,867,673	+		EFB2_02708	0.29	+0.6
2,867,673	+		EFB2_02708	0.29	-1.5
2,867,674	-		EFB2_02708	0.30	-0.5
2,867,696	-		EFB2_02708	0.33	+0.6
2,867,696	-		EFB2_02708	0.33	-1.0
2,867,698	+		EFB2_02708	0.33	-0.2
2,867,698	+		EFB2_02708	0.33	+0.7
2,867,699	-		EFB2_02708	0.33	+2.5
2,867,699	-		EFB2_02708	0.33	+1.1
2,867,699	-		EFB2_02708	0.33	+0.9
2,867,714	+		EFB2_02708	0.35	-1.0
2,867,715	-		EFB2_02708	0.35	+1.5
2,867,760	+		EFB2_02708	0.42	+1.2
2,867,760	+		EFB2_02708	0.42	+0.9
2,867,798	+		EFB2_02708	0.47	+1.1
2,867,798	+		EFB2_02708	0.47	+2.5
2,867,798	+		EFB2_02708	0.47	+0.3
2,867,799	-		EFB2_02708	0.47	+2.0
2,867,799	-		EFB2_02708	0.47	-0.4
2,867,950	+		EFB2_02708	0.68	-2.3
2,867,969	-		EFB2_02708	0.71	-0.4
2,868,086	+		EFB2_02708	0.87	-0.7
2,868,086	+		EFB2_02708	0.87	+0.5
2,868,086	+		EFB2_02708	0.87	+1.6
2,868,086	+		EFB2_02708	0.87	-1.3
2,868,087	-		EFB2_02708	0.87	-0.6
2,868,087	-		EFB2_02708	0.87	+0.2
2,868,087	-		EFB2_02708	0.87	-1.0
2,868,087	-		EFB2_02708	0.87	-0.1
2,868,087	-		EFB2_02708	0.87	-0.5
2,868,087	-		EFB2_02708	0.87	+0.0
2,868,087	-		EFB2_02708	0.87	+1.6
2,868,087	-		EFB2_02708	0.87	+0.5
2,868,087	-		EFB2_02708	0.87	+0.1
2,868,122	-				+0.2
2,868,152	+				+0.5
2,868,160	+				-0.7
2,868,160	+				+1.2
2,868,160	+				+1.5
2,868,160	+				-1.1
2,868,161	-				-2.1
2,868,161	-				+1.6
2,868,161	-				+1.1
2,868,161	-				-1.2
2,868,161	-				-0.5
2,868,161	-				-1.0
2,868,178	+				+1.2
2,868,178	+				-1.9
2,868,178	+				-1.6
2,868,178	+				+0.2
2,868,178	+				-0.5
2,868,178	+				+0.6
2,868,178	+				-1.8
2,868,178	+				-0.7
2,868,178	+				-0.1
2,868,178	+				+0.6
2,868,179	-				+2.0
2,868,179	-				-1.3
2,868,179	-				+1.3
2,868,179	-				+0.1
2,868,179	-				+1.2
2,868,179	-				+0.1
2,868,179	-				+1.5
2,868,179	-				-1.0
2,868,179	-				+2.0
2,868,251	+				+0.1
2,868,251	+				+0.9
2,868,251	+				-0.7
2,868,252	-				+2.1
2,868,252	-				+1.7
2,868,252	-				+0.5
2,868,252	-				-0.6
2,868,252	-				-0.5
2,868,252	-				-0.6
2,868,252	-				+1.6
2,868,252	-				+0.7
2,868,252	-				+2.5
2,868,252	-				-0.1
2,868,252	-				-1.6
2,868,292	+				-0.5
2,868,292	+				+1.2
2,868,292	+				+0.0
2,868,292	+				+0.5
2,868,293	-				-0.5
2,868,293	-				+0.2
2,868,293	-				+1.1
2,868,293	-				-0.6
2,868,293	-				+1.3
2,868,298	+				-1.2
2,868,299	-				-1.2
2,868,299	-				+2.1
2,868,299	-				+1.0
2,868,299	-				-0.1
2,868,299	-				-0.5
2,868,302	+				-0.3
2,868,302	+				-1.9
2,868,302	+				-0.2
2,868,302	+				+3.7
2,868,302	+				-2.5
2,868,302	+				+1.8
2,868,302	+				-2.4
2,868,302	+				+0.3
2,868,302	+				+0.2
2,868,302	+				-0.7
2,868,303	-				+2.7
2,868,303	-				+2.5
2,868,303	-				+0.9
2,868,303	-				-1.2
2,868,303	-				+0.8
2,868,303	-				-0.1
2,868,303	-				+0.1
2,868,303	-				-2.5
2,868,303	-				-1.5
2,868,303	-				+0.0
2,868,303	-				-1.0
2,868,303	-				+0.8
2,868,335	+				+0.3
2,868,335	+				+0.5
2,868,335	+				+0.2
2,868,335	+				+0.1
2,868,335	+				-1.4
2,868,336	-				-0.2
2,868,336	-				-0.2
2,868,336	-				-1.8
2,868,336	-				+0.9
2,868,336	-				-1.7
2,868,336	-				-0.0
2,868,336	-				+0.2
2,868,336	-				-0.0
2,868,355	+		EFB2_02709	0.17	-0.8
2,868,355	+		EFB2_02709	0.17	+1.9
2,868,355	+		EFB2_02709	0.17	+4.1
2,868,355	+		EFB2_02709	0.17	+1.5
2,868,356	-		EFB2_02709	0.18	-0.6
2,868,356	-		EFB2_02709	0.18	-0.1
2,868,356	-		EFB2_02709	0.18	+0.1
2,868,356	-		EFB2_02709	0.18	+1.5
2,868,356	-		EFB2_02709	0.18	+0.4
2,868,356	-		EFB2_02709	0.18	-0.2
2,868,356	-		EFB2_02709	0.18	-0.6
2,868,386	+		EFB2_02709	0.31	+1.3
2,868,431	+		EFB2_02709	0.50	+1.8
2,868,432	-		EFB2_02709	0.51	-0.7
2,868,432	-		EFB2_02709	0.51	+0.0
2,868,437	+		EFB2_02709	0.53	-1.8
2,868,437	+		EFB2_02709	0.53	+1.3
2,868,438	-		EFB2_02709	0.53	+0.1
2,868,438	-		EFB2_02709	0.53	-1.5
2,868,438	-		EFB2_02709	0.53	-0.4
2,868,438	-		EFB2_02709	0.53	-0.8
2,868,438	-		EFB2_02709	0.53	-0.5
2,868,440	-		EFB2_02709	0.54	+1.4
2,868,440	-		EFB2_02709	0.54	+2.3
2,868,440	-		EFB2_02709	0.54	-1.1
2,868,470	+		EFB2_02709	0.67	+0.9
2,868,471	-		EFB2_02709	0.68	-1.0
2,868,472	+		EFB2_02709	0.68	+0.5
2,868,472	+		EFB2_02709	0.68	+1.5
2,868,472	+		EFB2_02709	0.68	-1.9
2,868,472	+		EFB2_02709	0.68	+2.1
2,868,472	+		EFB2_02709	0.68	+1.5
2,868,472	+		EFB2_02709	0.68	+2.5
2,868,472	+		EFB2_02709	0.68	+1.7
2,868,472	+		EFB2_02709	0.68	+1.6
2,868,472	+		EFB2_02709	0.68	+1.3
2,868,472	+		EFB2_02709	0.68	+0.2
2,868,472	+		EFB2_02709	0.68	+2.5
2,868,473	-		EFB2_02709	0.68	+1.1
2,868,473	-		EFB2_02709	0.68	+0.3
2,868,473	-		EFB2_02709	0.68	-1.9
2,868,473	-		EFB2_02709	0.68	+0.5
2,868,473	-		EFB2_02709	0.68	+1.6
2,868,473	-		EFB2_02709	0.68	+0.3
2,868,473	-		EFB2_02709	0.68	+0.1
2,868,473	-		EFB2_02709	0.68	+0.2
2,868,473	-		EFB2_02709	0.68	-0.8
2,868,473	-		EFB2_02709	0.68	+0.8
2,868,473	-		EFB2_02709	0.68	+1.8
2,868,473	-		EFB2_02709	0.68	-1.4
2,868,473	-		EFB2_02709	0.68	-1.0
2,868,473	-		EFB2_02709	0.68	-0.3
2,868,473	-		EFB2_02709	0.68	-2.4
2,868,473	-		EFB2_02709	0.68	+1.2
2,868,476	+		EFB2_02709	0.70	+1.7
2,868,508	-		EFB2_02709	0.84	-0.7
2,868,536	+				+1.3
2,868,536	+				+0.8
2,868,536	+				+1.5
2,868,537	-				-1.5
2,868,537	-				-1.0
2,868,538	+				+0.6
2,868,539	-				+0.4
2,868,539	-				-1.3
2,868,560	-				+0.0
2,868,560	-				-1.1
2,868,560	-				+1.9
2,868,574	+				+2.2
2,868,574	+				+0.8
2,868,574	+				+1.8
2,868,574	+				-1.0
2,868,574	+				+1.6
2,868,574	+				-0.1
2,868,574	+				-0.4
2,868,574	+				+2.0
2,868,574	+				+1.9
2,868,575	-				-1.3
2,868,575	-				+1.2
2,868,575	-				-0.5
2,868,575	-				-0.1
2,868,575	-				-1.9
2,868,575	-				+1.6
2,868,575	-				-1.5
2,868,575	-				+0.7
2,868,590	+				-1.1
2,868,591	-				-3.1
2,868,591	-				+3.5
2,868,591	-				-2.6
2,868,591	-				-1.7
2,868,591	-				+0.6
2,868,591	-				-1.1
2,868,591	-				+0.5
2,868,591	-				-1.7
2,868,594	+				+0.9
2,868,594	+				+1.8
2,868,594	+				-0.8
2,868,594	+				-0.3
2,868,594	+				+1.1
2,868,594	+				+1.4
2,868,594	+				-0.5
2,868,594	+				-1.8
2,868,594	+				+0.9
2,868,595	-				-1.9
2,868,595	-				+0.4
2,868,595	-				+0.3
2,868,595	-				+3.0
2,868,595	-				-1.0
2,868,595	-				-1.3
2,868,595	-				+1.9
2,868,595	-				+0.3
2,868,595	-				-0.8
2,868,595	-				+1.0
2,868,595	-				+0.4
2,868,595	-				+2.0
2,868,595	-				+2.6
2,868,625	+				+0.4
2,868,626	-				-1.9
2,868,626	-				+0.7
2,868,626	-				+2.1
2,868,626	-				+3.7
2,868,626	-				-1.3
2,868,636	+				+0.6
2,868,636	+				-1.8
2,868,636	+				-2.7
2,868,637	-				-0.2
2,868,637	-				-0.8
2,868,646	+				+0.1
2,868,646	+				-0.7
2,868,647	-				+0.0
2,868,668	+				+0.2
2,868,671	+				-1.4
2,868,671	+				+0.2
2,868,672	-				+0.5
2,868,675	+				+2.1
2,868,696	-				-0.6
2,868,756	+				-0.0
2,868,770	-				-1.1
2,868,808	-				-1.3
2,868,813	+				+1.5
2,868,813	+				-0.0
2,868,814	-				-1.1
2,868,814	-				+0.2
2,868,814	-				+0.6
2,868,814	-				+0.0
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