Strain Fitness in Escherichia fergusonii Becca around EFB2_02289

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
2,423,110	-		EFB2_02288	0.33	-0.7
2,423,121	+		EFB2_02288	0.34	-1.8
2,423,122	-		EFB2_02288	0.34	-1.9
2,423,122	-		EFB2_02288	0.34	+1.7
2,423,129	+		EFB2_02288	0.35	+1.7
2,423,166	-		EFB2_02288	0.39	-2.4
2,423,185	-		EFB2_02288	0.42	+0.0
2,423,185	-		EFB2_02288	0.42	+1.1
2,423,244	+		EFB2_02288	0.49	-0.8
2,423,268	-		EFB2_02288	0.52	+1.3
2,423,268	-		EFB2_02288	0.52	+0.3
2,423,268	-		EFB2_02288	0.52	-0.3
2,423,294	+		EFB2_02288	0.55	-0.2
2,423,294	+		EFB2_02288	0.55	+0.1
2,423,294	+		EFB2_02288	0.55	+1.7
2,423,294	+		EFB2_02288	0.55	+0.2
2,423,295	-		EFB2_02288	0.55	+1.1
2,423,295	-		EFB2_02288	0.55	+0.3
2,423,295	-		EFB2_02288	0.55	+2.5
2,423,295	-		EFB2_02288	0.55	-0.3
2,423,298	+		EFB2_02288	0.55	+0.1
2,423,298	+		EFB2_02288	0.55	+1.9
2,423,298	+		EFB2_02288	0.55	-0.3
2,423,299	-		EFB2_02288	0.55	+1.7
2,423,307	+		EFB2_02288	0.56	+2.7
2,423,308	-		EFB2_02288	0.56	-0.8
2,423,308	-		EFB2_02288	0.56	+0.4
2,423,308	-		EFB2_02288	0.56	+1.6
2,423,308	-		EFB2_02288	0.56	+0.3
2,423,328	+		EFB2_02288	0.59	+0.3
2,423,329	-		EFB2_02288	0.59	-1.3
2,423,329	-		EFB2_02288	0.59	+0.2
2,423,371	+		EFB2_02288	0.64	-0.6
2,423,372	-		EFB2_02288	0.64	-1.8
2,423,431	-		EFB2_02288	0.71	+2.4
2,423,459	+		EFB2_02288	0.75	+1.3
2,423,460	-		EFB2_02288	0.75	+1.0
2,423,460	-		EFB2_02288	0.75	-1.7
2,423,460	-		EFB2_02288	0.75	-2.1
2,423,492	+		EFB2_02288	0.79	-1.9
2,423,556	+		EFB2_02288	0.86	-1.9
2,423,556	+		EFB2_02288	0.86	-0.3
2,423,556	+		EFB2_02288	0.86	-0.9
2,423,556	+		EFB2_02288	0.86	+2.7
2,423,557	-		EFB2_02288	0.86	+1.8
2,423,557	-		EFB2_02288	0.86	-0.7
2,423,557	-		EFB2_02288	0.86	+4.1
2,423,568	+		EFB2_02288	0.88	+1.1
2,423,602	+				+0.3
2,423,603	-				+0.1
2,423,695	+				-0.7
2,423,695	+				-1.2
2,423,695	+				+1.8
2,423,695	+				+0.7
2,423,695	+				-0.3
2,423,695	+				+0.5
2,423,696	-				-1.3
2,423,696	-				-1.3
2,423,701	+				+2.1
2,423,735	-				+0.9
2,423,735	-				-0.5
2,423,742	+				+0.4
2,423,742	+				+0.2
2,423,743	-				+0.7
2,423,743	-				-2.2
2,423,743	-				-0.0
2,423,743	-				+1.0
2,423,743	-				-0.3
2,423,803	+				+2.4
2,423,816	-				+0.7
2,423,817	+				-1.3
2,423,818	-				-0.9
2,423,828	+				+0.1
2,423,828	+				+1.4
2,423,829	-				+1.3
2,423,829	-				+0.5
2,423,933	+				+0.7
2,423,937	+				-1.0
2,423,937	+				-1.8
2,423,937	+				-0.2
2,423,938	-				+1.2
2,423,947	+				-0.2
2,423,947	+				+2.0
2,423,947	+				-0.9
2,423,983	+				-0.4
2,424,039	+				-0.9
2,424,039	+				-1.8
2,424,040	-				+0.7
2,424,040	-				+1.1
2,424,040	-				-0.9
2,424,041	+				-1.3
2,424,064	+				+0.8
2,424,064	+				-0.2
2,424,064	+				+0.6
2,424,064	+				+1.4
2,424,065	-				+0.7
2,424,065	-				+0.1
2,424,065	-				+2.9
2,424,065	-				+0.7
2,424,107	+				+1.8
2,424,107	+				-0.3
2,424,108	-				+5.7
2,424,110	+				-0.8
2,424,110	+				-0.2
2,424,110	+				-0.9
2,424,111	-				+2.7
2,424,210	+				+0.2
2,424,210	+				+1.3
2,424,211	-				-0.2
2,424,211	-				-1.0
2,424,336	+		EFB2_02289	0.14	-1.1
2,424,336	+		EFB2_02289	0.14	+1.5
2,424,336	+		EFB2_02289	0.14	+0.3
2,424,336	+		EFB2_02289	0.14	+2.1
2,424,336	+		EFB2_02289	0.14	-1.1
2,424,336	+		EFB2_02289	0.14	-2.3
2,424,337	-		EFB2_02289	0.14	+1.6
2,424,337	-		EFB2_02289	0.14	+1.6
2,424,337	-		EFB2_02289	0.14	-1.5
2,424,337	-		EFB2_02289	0.14	-0.1
2,424,337	-		EFB2_02289	0.14	+1.7
2,424,337	-		EFB2_02289	0.14	-0.7
2,424,337	-		EFB2_02289	0.14	+0.6
2,424,337	-		EFB2_02289	0.14	-1.4
2,424,337	-		EFB2_02289	0.14	-0.8
2,424,337	-		EFB2_02289	0.14	+0.7
2,424,404	+		EFB2_02289	0.17	+1.6
2,424,404	+		EFB2_02289	0.17	-0.6
2,424,404	+		EFB2_02289	0.17	+1.2
2,424,405	-		EFB2_02289	0.17	+0.3
2,424,490	+		EFB2_02289	0.20	+0.4
2,424,490	+		EFB2_02289	0.20	+0.1
2,424,490	+		EFB2_02289	0.20	-2.0
2,424,490	+		EFB2_02289	0.20	-1.7
2,424,490	+		EFB2_02289	0.20	+1.5
2,424,490	+		EFB2_02289	0.20	-0.7
2,424,490	+		EFB2_02289	0.20	-0.1
2,424,490	+		EFB2_02289	0.20	-1.6
2,424,490	+		EFB2_02289	0.20	+0.4
2,424,490	+		EFB2_02289	0.20	-1.5
2,424,490	+		EFB2_02289	0.20	+0.3
2,424,490	+		EFB2_02289	0.20	-1.4
2,424,490	+		EFB2_02289	0.20	-1.4
2,424,490	+		EFB2_02289	0.20	+0.1
2,424,491	-		EFB2_02289	0.21	+1.3
2,424,491	-		EFB2_02289	0.21	+1.2
2,424,491	-		EFB2_02289	0.21	-1.1
2,424,491	-		EFB2_02289	0.21	-0.5
2,424,491	-		EFB2_02289	0.21	-0.4
2,424,491	-		EFB2_02289	0.21	+1.6
2,424,491	-		EFB2_02289	0.21	-0.2
2,424,491	-		EFB2_02289	0.21	-0.4
2,424,491	-		EFB2_02289	0.21	-0.5
2,424,525	+		EFB2_02289	0.22	+1.1
2,424,525	+		EFB2_02289	0.22	-0.8
2,424,526	-		EFB2_02289	0.22	-1.5
2,424,526	-		EFB2_02289	0.22	-1.9
2,424,543	+		EFB2_02289	0.23	-1.4
2,424,662	+		EFB2_02289	0.28	-0.8
2,424,727	-		EFB2_02289	0.30	-0.5
2,424,734	+		EFB2_02289	0.31	+0.2
2,424,735	-		EFB2_02289	0.31	-1.5
2,424,853	+		EFB2_02289	0.36	-0.9
2,424,853	+		EFB2_02289	0.36	+0.7
2,424,854	-		EFB2_02289	0.36	+1.5
2,424,922	+		EFB2_02289	0.39	+2.6
2,424,939	+		EFB2_02289	0.39	-1.9
2,424,939	+		EFB2_02289	0.39	-0.1
2,424,940	-		EFB2_02289	0.39	+0.3
2,424,940	-		EFB2_02289	0.39	-0.2
2,424,940	-		EFB2_02289	0.39	-0.8
2,424,940	-		EFB2_02289	0.39	+0.6
2,424,940	-		EFB2_02289	0.39	-0.8
2,424,957	-		EFB2_02289	0.40	+2.6
2,425,050	+		EFB2_02289	0.44	+0.9
2,425,050	+		EFB2_02289	0.44	+1.5
2,425,052	+		EFB2_02289	0.44	+1.6
2,425,052	+		EFB2_02289	0.44	-0.6
2,425,052	+		EFB2_02289	0.44	-1.1
2,425,052	+		EFB2_02289	0.44	+1.2
2,425,053	-		EFB2_02289	0.44	-0.9
2,425,053	-		EFB2_02289	0.44	+1.0
2,425,053	-		EFB2_02289	0.44	-2.1
2,425,053	-		EFB2_02289	0.44	+2.3
2,425,053	-		EFB2_02289	0.44	+5.0
2,425,053	-		EFB2_02289	0.44	-0.5
2,425,094	+		EFB2_02289	0.46	+1.6
2,425,256	+		EFB2_02289	0.53	-1.1
2,425,256	+		EFB2_02289	0.53	-1.9
2,425,257	-		EFB2_02289	0.53	-0.1
2,425,383	+		EFB2_02289	0.58	+1.1
2,425,383	+		EFB2_02289	0.58	+1.3
2,425,383	+		EFB2_02289	0.58	-0.1
2,425,389	+		EFB2_02289	0.58	+0.0
2,425,389	+		EFB2_02289	0.58	+2.2
2,425,390	-		EFB2_02289	0.58	-0.4
2,425,410	-		EFB2_02289	0.59	-0.8
2,425,544	+		EFB2_02289	0.65	-0.2
2,425,545	-		EFB2_02289	0.65	+1.1
2,425,556	+		EFB2_02289	0.65	-0.5
2,425,761	+		EFB2_02289	0.74	-1.7
2,425,761	+		EFB2_02289	0.74	+1.0
2,425,761	+		EFB2_02289	0.74	+2.2
2,425,762	-		EFB2_02289	0.74	+0.3
2,425,762	-		EFB2_02289	0.74	-1.1
2,425,788	+		EFB2_02289	0.75	-0.8
2,425,839	+		EFB2_02289	0.77	-0.5
2,425,839	+		EFB2_02289	0.77	+1.1
2,425,920	-		EFB2_02289	0.81	+1.4
2,425,920	-		EFB2_02289	0.81	-1.9
2,426,241	+				+0.3
2,426,241	+				+1.1
2,426,241	+				-0.5
2,426,241	+				+2.6
2,426,241	+				+1.8
2,426,242	-				+0.1
2,426,242	-				+1.1
2,426,242	-				-0.5
2,426,242	-				+0.1
2,426,242	-				+0.2
2,426,242	-				+0.4
2,426,242	-				-1.9
2,426,356	+				+0.7
2,426,384	+				+0.4
2,426,385	-				-1.8
2,426,388	+				-0.5
2,426,388	+				-0.8
2,426,415	+				+0.9
2,426,415	+				-2.1
2,426,416	-				+0.3
2,426,416	-				-0.2
2,426,416	-				+0.8
2,426,440	-				-0.7
2,426,440	-				+1.7
2,426,480	-				-1.5
2,426,482	+				-0.8
2,426,483	-				+0.3
2,426,544	-				+0.2
2,426,551	+				+0.8
2,426,551	+				-1.7
2,426,551	+				+4.6
2,426,552	-				+0.6
2,426,552	-				+0.1
2,426,552	-				-1.4
2,426,562	+				+1.6
2,426,566	+				+3.2
2,426,567	-				+0.0
2,426,567	-				-0.7
2,426,649	+		EFB2_02290	0.13	+1.1
2,426,649	+		EFB2_02290	0.13	+1.1
2,426,649	+		EFB2_02290	0.13	-1.6
2,426,649	+		EFB2_02290	0.13	+2.3
2,426,649	+		EFB2_02290	0.13	+0.3
2,426,650	-		EFB2_02290	0.13	+1.6
2,426,650	-		EFB2_02290	0.13	+1.2
2,426,650	-		EFB2_02290	0.13	-1.7
2,426,650	-		EFB2_02290	0.13	-0.5
2,426,650	-		EFB2_02290	0.13	-1.2
2,426,650	-		EFB2_02290	0.13	-1.3
2,426,669	+		EFB2_02290	0.14	+0.4
2,426,670	-		EFB2_02290	0.14	-0.4
2,426,670	-		EFB2_02290	0.14	+0.3
2,426,670	-		EFB2_02290	0.14	+0.5
2,426,670	-		EFB2_02290	0.14	+2.1
2,426,714	-		EFB2_02290	0.17	-0.4
2,426,714	-		EFB2_02290	0.17	+0.6
2,426,727	-		EFB2_02290	0.18	-1.4
2,426,732	-		EFB2_02290	0.18	-1.1
2,426,732	-		EFB2_02290	0.18	-1.3
2,426,732	-		EFB2_02290	0.18	+1.8
2,426,738	+		EFB2_02290	0.18	+0.6
2,426,753	-		EFB2_02290	0.19	-0.6
2,426,756	-		EFB2_02290	0.19	-0.7
2,426,776	+		EFB2_02290	0.21	+1.1
2,426,776	+		EFB2_02290	0.21	+0.6
2,426,776	+		EFB2_02290	0.21	+0.5
2,426,777	-		EFB2_02290	0.21	+1.2
2,426,777	-		EFB2_02290	0.21	-0.5
2,426,777	-		EFB2_02290	0.21	-0.9
2,426,779	+		EFB2_02290	0.21	+0.6
2,426,780	-		EFB2_02290	0.21	+0.6
2,426,780	-		EFB2_02290	0.21	-2.1
2,426,804	+		EFB2_02290	0.22	+0.2
2,426,804	+		EFB2_02290	0.22	-1.1
2,426,808	+		EFB2_02290	0.22	+1.1
2,426,808	+		EFB2_02290	0.22	-1.1
2,426,845	-		EFB2_02290	0.25	-0.6
2,426,845	-		EFB2_02290	0.25	+0.9
2,426,845	-		EFB2_02290	0.25	-1.1
2,426,847	+		EFB2_02290	0.25	-1.1
2,426,848	-		EFB2_02290	0.25	-0.6
2,426,983	+		EFB2_02290	0.33	-1.3
2,426,984	-		EFB2_02290	0.33	-0.8
2,426,984	-		EFB2_02290	0.33	-0.4
2,426,984	-		EFB2_02290	0.33	-0.5
2,426,990	+		EFB2_02290	0.34	+0.1
2,426,990	+		EFB2_02290	0.34	+1.2
2,426,991	-		EFB2_02290	0.34	+1.1
2,426,991	-		EFB2_02290	0.34	-0.4
2,426,991	-		EFB2_02290	0.34	+0.8
2,426,991	-		EFB2_02290	0.34	-1.8
2,426,991	-		EFB2_02290	0.34	-0.7
2,427,022	+		EFB2_02290	0.35	-0.2
2,427,022	+		EFB2_02290	0.35	+0.4
2,427,085	-		EFB2_02290	0.39	+3.2
2,427,092	+		EFB2_02290	0.40	-0.5
2,427,093	-		EFB2_02290	0.40	+0.9
2,427,093	-		EFB2_02290	0.40	-1.7
2,427,096	-		EFB2_02290	0.40	+0.9
2,427,148	+		EFB2_02290	0.43	-1.3
2,427,148	+		EFB2_02290	0.43	-1.4
2,427,200	+		EFB2_02290	0.46	+0.3
2,427,220	-		EFB2_02290	0.47	-1.9
2,427,220	-		EFB2_02290	0.47	-1.5
2,427,244	+		EFB2_02290	0.49	+0.4
2,427,244	+		EFB2_02290	0.49	-0.8
2,427,244	+		EFB2_02290	0.49	-1.4
2,427,244	+		EFB2_02290	0.49	+2.3
2,427,245	-		EFB2_02290	0.49	-1.4
2,427,245	-		EFB2_02290	0.49	-0.3
2,427,299	-		EFB2_02290	0.52	-0.4
2,427,299	-		EFB2_02290	0.52	+2.6
2,427,302	+		EFB2_02290	0.52	+2.0
2,427,302	+		EFB2_02290	0.52	-0.4
2,427,303	-		EFB2_02290	0.53	-3.0
2,427,341	+		EFB2_02290	0.55	+0.2
2,427,341	+		EFB2_02290	0.55	+1.6
2,427,341	+		EFB2_02290	0.55	+0.1