Strain Fitness in Escherichia fergusonii Becca around EFB2_02220

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
2,354,640	+		EFB2_02219	0.30	+1.3
2,354,640	+		EFB2_02219	0.30	+0.5
2,354,640	+		EFB2_02219	0.30	+0.6
2,354,640	+		EFB2_02219	0.30	+0.8
2,354,640	+		EFB2_02219	0.30	+0.1
2,354,640	+		EFB2_02219	0.30	+0.6
2,354,641	-		EFB2_02219	0.30	-1.0
2,354,641	-		EFB2_02219	0.30	-0.4
2,354,641	-		EFB2_02219	0.30	-0.3
2,354,641	-		EFB2_02219	0.30	+3.8
2,354,642	+		EFB2_02219	0.30	+1.5
2,354,642	+		EFB2_02219	0.30	-0.4
2,354,642	+		EFB2_02219	0.30	+0.8
2,354,642	+		EFB2_02219	0.30	+1.0
2,354,642	+		EFB2_02219	0.30	+1.6
2,354,642	+		EFB2_02219	0.30	-0.2
2,354,642	+		EFB2_02219	0.30	+0.5
2,354,642	+		EFB2_02219	0.30	+0.1
2,354,642	+		EFB2_02219	0.30	-0.4
2,354,642	+		EFB2_02219	0.30	+1.9
2,354,642	+		EFB2_02219	0.30	+1.2
2,354,642	+		EFB2_02219	0.30	-1.9
2,354,642	+		EFB2_02219	0.30	-0.2
2,354,643	-		EFB2_02219	0.30	+0.3
2,354,643	-		EFB2_02219	0.30	-0.8
2,354,643	-		EFB2_02219	0.30	+1.1
2,354,643	-		EFB2_02219	0.30	+3.1
2,354,643	-		EFB2_02219	0.30	-0.2
2,354,643	-		EFB2_02219	0.30	+1.2
2,354,643	-		EFB2_02219	0.30	-1.0
2,354,643	-		EFB2_02219	0.30	-0.2
2,354,643	-		EFB2_02219	0.30	-0.8
2,354,688	-		EFB2_02219	0.33	-0.5
2,354,693	+		EFB2_02219	0.34	+0.2
2,354,693	+		EFB2_02219	0.34	+1.5
2,354,694	-		EFB2_02219	0.34	-0.9
2,354,703	+		EFB2_02219	0.35	+0.8
2,354,770	+		EFB2_02219	0.39	-0.2
2,354,791	+		EFB2_02219	0.41	-0.2
2,354,791	+		EFB2_02219	0.41	-0.8
2,354,792	-		EFB2_02219	0.41	+0.3
2,354,792	-		EFB2_02219	0.41	+0.3
2,354,792	-		EFB2_02219	0.41	+1.6
2,354,801	+		EFB2_02219	0.42	+0.3
2,354,801	+		EFB2_02219	0.42	+2.6
2,354,801	+		EFB2_02219	0.42	+1.8
2,354,802	-		EFB2_02219	0.42	-1.2
2,354,802	-		EFB2_02219	0.42	-1.2
2,354,807	+		EFB2_02219	0.42	-2.3
2,354,897	+		EFB2_02219	0.49	-0.5
2,354,897	+		EFB2_02219	0.49	-1.2
2,354,897	+		EFB2_02219	0.49	+0.0
2,354,899	+		EFB2_02219	0.49	-0.3
2,354,899	+		EFB2_02219	0.49	-1.4
2,354,899	+		EFB2_02219	0.49	-0.7
2,354,899	+		EFB2_02219	0.49	-1.6
2,354,899	+		EFB2_02219	0.49	+0.5
2,354,899	+		EFB2_02219	0.49	-1.5
2,354,899	+		EFB2_02219	0.49	-0.8
2,354,899	+		EFB2_02219	0.49	-0.4
2,354,899	+		EFB2_02219	0.49	-1.4
2,354,899	+		EFB2_02219	0.49	-0.8
2,354,900	-		EFB2_02219	0.49	+0.8
2,354,900	-		EFB2_02219	0.49	-1.3
2,354,900	-		EFB2_02219	0.49	+1.8
2,354,900	-		EFB2_02219	0.49	-1.1
2,354,900	-		EFB2_02219	0.49	-1.4
2,354,900	-		EFB2_02219	0.49	+2.6
2,354,900	-		EFB2_02219	0.49	-0.7
2,354,900	-		EFB2_02219	0.49	+1.5
2,354,900	-		EFB2_02219	0.49	-0.4
2,354,900	-		EFB2_02219	0.49	+0.9
2,354,900	-		EFB2_02219	0.49	-1.5
2,354,914	+		EFB2_02219	0.50	-1.3
2,354,915	-		EFB2_02219	0.50	-0.4
2,354,928	-		EFB2_02219	0.51	+0.3
2,354,963	+		EFB2_02219	0.53	-1.5
2,354,986	-		EFB2_02219	0.55	+0.3
2,354,995	+		EFB2_02219	0.56	-2.8
2,354,996	-		EFB2_02219	0.56	+1.4
2,355,008	-		EFB2_02219	0.57	-1.8
2,355,008	-		EFB2_02219	0.57	-1.8
2,355,008	-		EFB2_02219	0.57	+3.8
2,355,008	-		EFB2_02219	0.57	+0.2
2,355,008	-		EFB2_02219	0.57	-2.2
2,355,008	-		EFB2_02219	0.57	-0.2
2,355,008	-		EFB2_02219	0.57	-1.3
2,355,008	-		EFB2_02219	0.57	-0.4
2,355,010	+		EFB2_02219	0.57	+0.3
2,355,028	+		EFB2_02219	0.58	-0.8
2,355,028	+		EFB2_02219	0.58	-0.8
2,355,029	-		EFB2_02219	0.58	+0.9
2,355,067	-		EFB2_02219	0.61	+0.7
2,355,067	-		EFB2_02219	0.61	-0.8
2,355,067	-		EFB2_02219	0.61	-0.4
2,355,078	-		EFB2_02219	0.62	-1.8
2,355,113	+		EFB2_02219	0.64	+2.2
2,355,150	-		EFB2_02219	0.67	-1.5
2,355,150	-		EFB2_02219	0.67	+1.0
2,355,177	-		EFB2_02219	0.69	+1.8
2,355,232	+		EFB2_02219	0.73	-0.5
2,355,232	+		EFB2_02219	0.73	-1.5
2,355,232	+		EFB2_02219	0.73	+1.6
2,355,255	+		EFB2_02219	0.75	+0.1
2,355,255	+		EFB2_02219	0.75	-1.0
2,355,257	+		EFB2_02219	0.75	-1.5
2,355,257	+		EFB2_02219	0.75	-0.8
2,355,257	+		EFB2_02219	0.75	-1.1
2,355,257	+		EFB2_02219	0.75	+0.3
2,355,258	-		EFB2_02219	0.75	+1.0
2,355,258	-		EFB2_02219	0.75	+2.6
2,355,258	-		EFB2_02219	0.75	-1.8
2,355,261	+		EFB2_02219	0.75	+1.7
2,355,278	+		EFB2_02219	0.76	-1.8
2,355,279	-		EFB2_02219	0.76	+1.8
2,355,279	-		EFB2_02219	0.76	+1.3
2,355,289	+		EFB2_02219	0.77	-0.0
2,355,314	+		EFB2_02219	0.79	-0.8
2,355,324	+		EFB2_02219	0.80	+0.4
2,355,324	+		EFB2_02219	0.80	+0.6
2,355,324	+		EFB2_02219	0.80	+1.3
2,355,324	+		EFB2_02219	0.80	+1.6
2,355,324	+		EFB2_02219	0.80	+1.8
2,355,325	-		EFB2_02219	0.80	-1.4
2,355,326	+		EFB2_02219	0.80	+1.6
2,355,326	+		EFB2_02219	0.80	+0.0
2,355,326	+		EFB2_02219	0.80	+0.1
2,355,326	+		EFB2_02219	0.80	-0.1
2,355,327	-		EFB2_02219	0.80	-0.7
2,355,330	+		EFB2_02219	0.80	+0.1
2,355,330	+		EFB2_02219	0.80	-1.6
2,355,330	+		EFB2_02219	0.80	+0.6
2,355,330	+		EFB2_02219	0.80	-0.2
2,355,330	+		EFB2_02219	0.80	+0.0
2,355,330	+		EFB2_02219	0.80	+0.6
2,355,330	+		EFB2_02219	0.80	-1.4
2,355,330	+		EFB2_02219	0.80	-2.0
2,355,330	+		EFB2_02219	0.80	+0.4
2,355,330	+		EFB2_02219	0.80	-2.3
2,355,330	+		EFB2_02219	0.80	-1.0
2,355,330	+		EFB2_02219	0.80	+1.4
2,355,330	+		EFB2_02219	0.80	+2.6
2,355,331	-		EFB2_02219	0.80	+1.4
2,355,331	-		EFB2_02219	0.80	+1.3
2,355,331	-		EFB2_02219	0.80	+2.3
2,355,331	-		EFB2_02219	0.80	+2.4
2,355,331	-		EFB2_02219	0.80	+0.5
2,355,331	-		EFB2_02219	0.80	-0.4
2,355,331	-		EFB2_02219	0.80	-0.2
2,355,331	-		EFB2_02219	0.80	+0.0
2,355,331	-		EFB2_02219	0.80	-0.2
2,355,339	+		EFB2_02219	0.81	-2.1
2,355,354	+		EFB2_02219	0.82	+1.8
2,355,354	+		EFB2_02219	0.82	-1.5
2,355,354	+		EFB2_02219	0.82	+2.1
2,355,354	+		EFB2_02219	0.82	+0.3
2,355,354	+		EFB2_02219	0.82	-1.4
2,355,354	+		EFB2_02219	0.82	-1.8
2,355,354	+		EFB2_02219	0.82	-1.6
2,355,354	+		EFB2_02219	0.82	-0.4
2,355,354	+		EFB2_02219	0.82	+0.6
2,355,354	+		EFB2_02219	0.82	-2.7
2,355,354	+		EFB2_02219	0.82	+2.0
2,355,354	+		EFB2_02219	0.82	-0.4
2,355,354	+		EFB2_02219	0.82	+0.3
2,355,354	+		EFB2_02219	0.82	+1.8
2,355,354	+		EFB2_02219	0.82	+1.2
2,355,354	+		EFB2_02219	0.82	-2.7
2,355,354	+		EFB2_02219	0.82	-1.1
2,355,354	+		EFB2_02219	0.82	-1.4
2,355,354	+		EFB2_02219	0.82	-1.0
2,355,354	+		EFB2_02219	0.82	+0.0
2,355,354	+		EFB2_02219	0.82	-1.1
2,355,354	+		EFB2_02219	0.82	+2.0
2,355,354	+		EFB2_02219	0.82	+0.9
2,355,354	+		EFB2_02219	0.82	-0.5
2,355,354	+		EFB2_02219	0.82	+1.6
2,355,354	+		EFB2_02219	0.82	+1.0
2,355,354	+		EFB2_02219	0.82	-1.3
2,355,354	+		EFB2_02219	0.82	+0.4
2,355,355	-		EFB2_02219	0.82	+0.6
2,355,355	-		EFB2_02219	0.82	-1.3
2,355,355	-		EFB2_02219	0.82	+1.1
2,355,355	-		EFB2_02219	0.82	-0.7
2,355,355	-		EFB2_02219	0.82	-1.2
2,355,355	-		EFB2_02219	0.82	-1.1
2,355,355	-		EFB2_02219	0.82	-1.6
2,355,355	-		EFB2_02219	0.82	+1.0
2,355,355	-		EFB2_02219	0.82	-0.4
2,355,355	-		EFB2_02219	0.82	-0.4
2,355,355	-		EFB2_02219	0.82	+0.5
2,355,415	+		EFB2_02219	0.86	-1.5
2,355,431	+		EFB2_02219	0.87	+1.4
2,355,431	+		EFB2_02219	0.87	+0.7
2,355,431	+		EFB2_02219	0.87	+1.1
2,355,444	+		EFB2_02219	0.88	-0.8
2,355,445	-		EFB2_02219	0.88	-0.5
2,355,467	+		EFB2_02219	0.90	+0.1
2,355,467	+		EFB2_02219	0.90	-0.5
2,355,467	+		EFB2_02219	0.90	-1.5
2,355,468	-				-0.4
2,355,468	-				+0.7
2,355,468	-				-0.1
2,355,471	+				-2.6
2,355,492	-				-0.8
2,355,604	-				+0.3
2,355,724	+				-1.2
2,355,732	+		EFB2_02220	0.11	-1.9
2,355,749	+		EFB2_02220	0.12	+0.3
2,355,749	+		EFB2_02220	0.12	-0.6
2,355,749	+		EFB2_02220	0.12	+1.6
2,355,749	+		EFB2_02220	0.12	+2.6
2,355,881	+		EFB2_02220	0.25	+2.6
2,355,937	+		EFB2_02220	0.30	-0.4
2,355,937	+		EFB2_02220	0.30	+2.9
2,355,937	+		EFB2_02220	0.30	+1.1
2,355,937	+		EFB2_02220	0.30	-3.5
2,355,937	+		EFB2_02220	0.30	+1.7
2,355,938	-		EFB2_02220	0.30	-0.2
2,355,938	-		EFB2_02220	0.30	-0.0
2,355,938	-		EFB2_02220	0.30	+0.6
2,355,938	-		EFB2_02220	0.30	+1.0
2,355,938	-		EFB2_02220	0.30	-2.1
2,355,939	+		EFB2_02220	0.30	+0.9
2,355,940	-		EFB2_02220	0.30	-0.7
2,355,982	+		EFB2_02220	0.34	+0.4
2,356,003	+		EFB2_02220	0.36	+0.3
2,356,003	+		EFB2_02220	0.36	+1.3
2,356,003	+		EFB2_02220	0.36	-0.3
2,356,003	+		EFB2_02220	0.36	+0.0
2,356,003	+		EFB2_02220	0.36	-0.8
2,356,004	-		EFB2_02220	0.37	-0.1
2,356,004	-		EFB2_02220	0.37	+0.6
2,356,004	-		EFB2_02220	0.37	+1.5
2,356,004	-		EFB2_02220	0.37	-1.2
2,356,026	+		EFB2_02220	0.39	+0.8
2,356,026	+		EFB2_02220	0.39	+1.2
2,356,026	+		EFB2_02220	0.39	-2.5
2,356,026	+		EFB2_02220	0.39	+1.4
2,356,027	-		EFB2_02220	0.39	+0.0
2,356,027	-		EFB2_02220	0.39	+0.4
2,356,027	-		EFB2_02220	0.39	+3.2
2,356,027	-		EFB2_02220	0.39	+0.8
2,356,027	-		EFB2_02220	0.39	+1.7
2,356,027	-		EFB2_02220	0.39	+0.9
2,356,027	-		EFB2_02220	0.39	-1.9
2,356,027	-		EFB2_02220	0.39	+0.6
2,356,027	-		EFB2_02220	0.39	-0.3
2,356,027	-		EFB2_02220	0.39	+1.1
2,356,030	+		EFB2_02220	0.39	+1.0
2,356,031	-		EFB2_02220	0.39	-1.1
2,356,031	-		EFB2_02220	0.39	-0.4
2,356,031	-		EFB2_02220	0.39	-0.4
2,356,047	+		EFB2_02220	0.41	+0.5
2,356,047	+		EFB2_02220	0.41	+1.0
2,356,047	+		EFB2_02220	0.41	+0.0
2,356,047	+		EFB2_02220	0.41	+1.8
2,356,047	+		EFB2_02220	0.41	-1.0
2,356,119	+		EFB2_02220	0.48	+1.1
2,356,119	+		EFB2_02220	0.48	+1.5
2,356,119	+		EFB2_02220	0.48	-2.0
2,356,120	-		EFB2_02220	0.48	+1.0
2,356,129	-		EFB2_02220	0.49	+2.6
2,356,129	-		EFB2_02220	0.49	-1.4
2,356,136	+		EFB2_02220	0.49	-0.7
2,356,136	+		EFB2_02220	0.49	-0.0
2,356,136	+		EFB2_02220	0.49	+1.7
2,356,140	+		EFB2_02220	0.50	-0.5
2,356,140	+		EFB2_02220	0.50	+0.0
2,356,140	+		EFB2_02220	0.50	-1.2
2,356,141	-		EFB2_02220	0.50	+0.8
2,356,141	-		EFB2_02220	0.50	+0.0
2,356,158	+		EFB2_02220	0.51	+2.3
2,356,158	+		EFB2_02220	0.51	+0.1
2,356,158	+		EFB2_02220	0.51	+1.5
2,356,158	+		EFB2_02220	0.51	+3.4
2,356,158	+		EFB2_02220	0.51	+1.4
2,356,158	+		EFB2_02220	0.51	-2.5
2,356,158	+		EFB2_02220	0.51	+0.0
2,356,159	-		EFB2_02220	0.51	+1.4
2,356,159	-		EFB2_02220	0.51	-0.2
2,356,272	+		EFB2_02220	0.62	+1.6
2,356,296	+		EFB2_02220	0.65	+0.5
2,356,296	+		EFB2_02220	0.65	-1.8
2,356,296	+		EFB2_02220	0.65	-1.5
2,356,296	+		EFB2_02220	0.65	-0.6
2,356,296	+		EFB2_02220	0.65	-1.1
2,356,297	-		EFB2_02220	0.65	-1.4
2,356,297	-		EFB2_02220	0.65	-1.1
2,356,297	-		EFB2_02220	0.65	-1.7
2,356,297	-		EFB2_02220	0.65	-0.7
2,356,317	+		EFB2_02220	0.67	-1.1
2,356,318	-		EFB2_02220	0.67	+1.3
2,356,387	+		EFB2_02220	0.73	+1.0
2,356,387	+		EFB2_02220	0.73	-1.8
2,356,387	+		EFB2_02220	0.73	-0.4
2,356,387	+		EFB2_02220	0.73	+1.9
2,356,387	+		EFB2_02220	0.73	-1.7
2,356,388	-		EFB2_02220	0.73	+0.6
2,356,388	-		EFB2_02220	0.73	-0.5
2,356,388	-		EFB2_02220	0.73	-1.4
2,356,408	-		EFB2_02220	0.75	-1.5
2,356,413	+		EFB2_02220	0.76	+0.5
2,356,430	+		EFB2_02220	0.77	+0.5
2,356,499	-		EFB2_02220	0.84	-0.4
2,356,530	+		EFB2_02220	0.87	-1.1
2,356,530	+		EFB2_02220	0.87	+0.6
2,356,531	-		EFB2_02220	0.87	+0.3
2,356,531	-		EFB2_02220	0.87	+0.0
2,356,572	+				+1.4
2,356,572	+				-1.2
2,356,592	+				+0.5
2,356,592	+				-0.3
2,356,592	+				+0.2
2,356,593	-				+0.6
2,356,593	-				+0.0
2,356,593	-				+0.3
2,356,636	-				-1.4
2,356,756	+				+0.2
2,356,915	+		EFB2_02221	0.27	+0.6
2,356,915	+		EFB2_02221	0.27	+1.2
2,356,916	-		EFB2_02221	0.27	+1.2
2,356,950	-		EFB2_02221	0.32	+1.2
2,357,086	+		EFB2_02221	0.48	+0.5
2,357,112	+		EFB2_02221	0.51	+1.2
2,357,133	+		EFB2_02221	0.53	+1.7
2,357,139	+		EFB2_02221	0.54	-0.8
2,357,139	+		EFB2_02221	0.54	-0.8
2,357,139	+		EFB2_02221	0.54	-1.1
2,357,139	+		EFB2_02221	0.54	-0.2
2,357,139	+		EFB2_02221	0.54	-0.2
2,357,139	+		EFB2_02221	0.54	-0.5
2,357,139	+		EFB2_02221	0.54	+0.9
2,357,141	+		EFB2_02221	0.54	-1.3
2,357,141	+		EFB2_02221	0.54	-0.4
2,357,226	+		EFB2_02221	0.65	-1.1
2,357,227	-		EFB2_02221	0.65	-1.5
2,357,227	-		EFB2_02221	0.65	-1.0
2,357,228	+		EFB2_02221	0.65	-1.0
2,357,228	+		EFB2_02221	0.65	-0.1
2,357,228	+		EFB2_02221	0.65	+0.3
2,357,228	+		EFB2_02221	0.65	+0.2
2,357,228	+		EFB2_02221	0.65	-0.8
2,357,228	+		EFB2_02221	0.65	+0.9
2,357,228	+		EFB2_02221	0.65	-1.7
2,357,228	+		EFB2_02221	0.65	+0.4
2,357,228	+		EFB2_02221	0.65	-0.5
2,357,229	-		EFB2_02221	0.65	-2.8
2,357,229	-		EFB2_02221	0.65	-1.3
2,357,229	-		EFB2_02221	0.65	-0.8
2,357,229	-		EFB2_02221	0.65	+1.0
2,357,333	+		EFB2_02221	0.77	+2.3
2,357,334	-		EFB2_02221	0.77	+2.0
2,357,354	+		EFB2_02221	0.80	+0.0
2,357,375	+		EFB2_02221	0.82	-1.5
2,357,401	+		EFB2_02221	0.85	+2.9
2,357,440	+				-2.0
2,357,441	-				-1.0
2,357,520	+				-0.8
2,357,523	+				-0.8
2,357,544	+				+1.6
2,357,544	+				-1.5
2,357,545	-				+0.0
2,357,552	+				-0.7
2,357,552	+				+1.4
2,357,562	+				+0.0
2,357,660	+		EFB2_02222	0.14	+1.4