Strain Fitness in Escherichia fergusonii Becca around EFB2_01796

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
1,909,374	-				+1.3
1,909,379	+				+0.4
1,909,379	+				+0.3
1,909,380	-				-2.7
1,909,382	+				-0.9
1,909,383	-				+0.7
1,909,383	-				-0.1
1,909,383	-				-0.7
1,909,383	-				-0.1
1,909,388	+				-2.1
1,909,388	+				-1.2
1,909,389	-				-1.6
1,909,389	-				+1.0
1,909,394	+				-2.1
1,909,394	+				+0.1
1,909,394	+				+0.2
1,909,394	+				+1.1
1,909,394	+				-2.6
1,909,394	+				-0.4
1,909,394	+				+1.5
1,909,394	+				-2.6
1,909,394	+				+0.8
1,909,394	+				+1.5
1,909,394	+				-1.2
1,909,394	+				-1.0
1,909,394	+				+0.9
1,909,394	+				-0.6
1,909,395	-				-1.3
1,909,395	-				+0.5
1,909,395	-				+0.8
1,909,395	-				-0.4
1,909,395	-				+1.9
1,909,395	-				-1.7
1,909,395	-				+2.3
1,909,395	-				-0.2
1,909,396	+				-0.2
1,909,396	+				-2.4
1,909,396	+				-1.7
1,909,396	+				-0.7
1,909,396	+				+0.6
1,909,396	+				-1.1
1,909,396	+				-0.5
1,909,396	+				+0.7
1,909,397	-				-1.1
1,909,397	-				-1.6
1,909,397	-				+0.0
1,909,397	-				+3.2
1,909,397	-				+1.3
1,909,397	-				-0.7
1,909,397	-				+0.6
1,909,397	-				-0.4
1,909,412	+				+0.4
1,909,488	+				+0.1
1,909,488	+				+1.0
1,909,489	-				-0.0
1,909,489	-				-0.1
1,909,489	-				-1.3
1,909,489	-				+1.2
1,909,506	+				+0.8
1,909,506	+				-2.4
1,909,506	+				-0.1
1,909,506	+				-0.8
1,909,507	-				+0.4
1,909,507	-				+1.7
1,909,507	-				-1.6
1,909,507	-				-0.5
1,909,507	-				+0.5
1,909,507	-				-0.8
1,909,507	-				+0.0
1,909,507	-				+0.0
1,909,507	-				+0.3
1,909,534	+				-1.7
1,909,534	+				-3.1
1,909,534	+				-3.3
1,909,534	+				-0.1
1,909,534	+				+0.8
1,909,534	+				+1.2
1,909,534	+				-0.7
1,909,534	+				-1.4
1,909,534	+				-0.2
1,909,534	+				+0.2
1,909,534	+				+0.2
1,909,534	+				-1.7
1,909,534	+				+1.6
1,909,534	+				+1.3
1,909,534	+				+0.6
1,909,535	-				-0.1
1,909,535	-				+1.2
1,909,535	-				-0.4
1,909,535	-				-0.6
1,909,535	-				+1.2
1,909,535	-				+0.8
1,909,535	-				+0.1
1,909,535	-				+0.8
1,909,535	-				+0.4
1,909,535	-				+3.1
1,909,535	-				-0.2
1,909,535	-				-0.8
1,909,535	-				+1.3
1,909,535	-				+0.0
1,909,535	-				-1.3
1,909,535	-				-0.0
1,909,535	-				-0.1
1,909,535	-				-3.2
1,909,535	-				+0.1
1,909,535	-				+0.6
1,909,535	-				-0.1
1,909,535	-				+0.0
1,909,535	-				-0.8
1,909,535	-				-0.1
1,909,535	-				+2.3
1,909,535	-				+1.5
1,909,535	-				+0.6
1,909,535	-				-2.2
1,909,535	-				-1.2
1,909,535	-				+0.6
1,909,535	-				+0.9
1,909,536	+				-0.2
1,909,536	+				-0.1
1,909,536	+				+0.9
1,909,536	+				+0.0
1,909,536	+				-1.7
1,909,536	+				-0.2
1,909,537	-				-0.2
1,909,537	-				+0.5
1,909,537	-				+1.0
1,909,537	-				+1.3
1,909,537	-				-0.7
1,909,600	+		EFB2_01795	0.11	-1.0
1,909,600	+		EFB2_01795	0.11	-2.4
1,909,600	+		EFB2_01795	0.11	+0.7
1,909,600	+		EFB2_01795	0.11	+0.2
1,909,601	-		EFB2_01795	0.11	-0.6
1,909,601	-		EFB2_01795	0.11	-1.8
1,909,601	-		EFB2_01795	0.11	+1.6
1,909,601	-		EFB2_01795	0.11	+0.4
1,909,601	-		EFB2_01795	0.11	-0.2
1,909,601	-		EFB2_01795	0.11	-1.4
1,909,601	-		EFB2_01795	0.11	+0.1
1,909,601	-		EFB2_01795	0.11	+0.8
1,909,601	-		EFB2_01795	0.11	+1.1
1,909,601	-		EFB2_01795	0.11	+2.1
1,909,601	-		EFB2_01795	0.11	-0.2
1,909,655	+		EFB2_01795	0.18	+1.3
1,909,655	+		EFB2_01795	0.18	-0.1
1,909,655	+		EFB2_01795	0.18	-1.2
1,909,655	+		EFB2_01795	0.18	+0.9
1,909,655	+		EFB2_01795	0.18	-0.9
1,909,655	+		EFB2_01795	0.18	+0.5
1,909,656	-		EFB2_01795	0.18	-0.3
1,909,656	-		EFB2_01795	0.18	+1.2
1,909,656	-		EFB2_01795	0.18	-0.8
1,909,656	-		EFB2_01795	0.18	-0.7
1,909,656	-		EFB2_01795	0.18	-1.5
1,909,656	-		EFB2_01795	0.18	+1.9
1,909,656	-		EFB2_01795	0.18	-1.5
1,909,656	-		EFB2_01795	0.18	-0.2
1,909,656	-		EFB2_01795	0.18	-1.0
1,909,656	-		EFB2_01795	0.18	-0.5
1,909,656	-		EFB2_01795	0.18	+0.4
1,909,656	-		EFB2_01795	0.18	-0.8
1,909,656	-		EFB2_01795	0.18	-2.4
1,909,656	-		EFB2_01795	0.18	-1.9
1,909,656	-		EFB2_01795	0.18	-1.2
1,909,656	-		EFB2_01795	0.18	-1.9
1,909,656	-		EFB2_01795	0.18	+0.0
1,909,656	-		EFB2_01795	0.18	-0.8
1,909,656	-		EFB2_01795	0.18	-1.4
1,909,656	-		EFB2_01795	0.18	+1.0
1,909,656	-		EFB2_01795	0.18	+1.0
1,909,656	-		EFB2_01795	0.18	-0.4
1,909,656	-		EFB2_01795	0.18	-1.7
1,909,663	+		EFB2_01795	0.19	-0.0
1,909,663	+		EFB2_01795	0.19	+1.1
1,909,663	+		EFB2_01795	0.19	+0.9
1,909,663	+		EFB2_01795	0.19	-0.1
1,909,663	+		EFB2_01795	0.19	+0.1
1,909,663	+		EFB2_01795	0.19	+1.5
1,909,663	+		EFB2_01795	0.19	+0.8
1,909,663	+		EFB2_01795	0.19	+0.3
1,909,663	+		EFB2_01795	0.19	-0.2
1,909,663	+		EFB2_01795	0.19	+2.3
1,909,663	+		EFB2_01795	0.19	+0.7
1,909,663	+		EFB2_01795	0.19	+0.1
1,909,663	+		EFB2_01795	0.19	+1.3
1,909,664	-		EFB2_01795	0.19	-1.7
1,909,664	-		EFB2_01795	0.19	-1.2
1,909,664	-		EFB2_01795	0.19	+0.4
1,909,664	-		EFB2_01795	0.19	-2.7
1,909,664	-		EFB2_01795	0.19	-2.4
1,909,664	-		EFB2_01795	0.19	-3.5
1,909,664	-		EFB2_01795	0.19	+0.5
1,909,664	-		EFB2_01795	0.19	-0.0
1,909,664	-		EFB2_01795	0.19	+0.8
1,909,664	-		EFB2_01795	0.19	-1.2
1,909,664	-		EFB2_01795	0.19	-0.3
1,909,664	-		EFB2_01795	0.19	-2.0
1,909,690	-		EFB2_01795	0.22	-0.2
1,909,690	-		EFB2_01795	0.22	-0.7
1,909,696	+		EFB2_01795	0.23	+1.3
1,909,696	+		EFB2_01795	0.23	+2.0
1,909,696	+		EFB2_01795	0.23	-1.2
1,909,696	+		EFB2_01795	0.23	-1.7
1,909,696	+		EFB2_01795	0.23	-0.8
1,909,697	-		EFB2_01795	0.23	-0.4
1,909,697	-		EFB2_01795	0.23	-0.7
1,909,697	-		EFB2_01795	0.23	+1.0
1,909,697	-		EFB2_01795	0.23	-0.9
1,909,697	-		EFB2_01795	0.23	-1.8
1,909,697	-		EFB2_01795	0.23	-1.8
1,909,697	-		EFB2_01795	0.23	-0.7
1,909,697	-		EFB2_01795	0.23	-2.8
1,909,697	-		EFB2_01795	0.23	-1.8
1,909,713	+		EFB2_01795	0.25	-3.4
1,909,714	-		EFB2_01795	0.25	+0.9
1,909,734	-		EFB2_01795	0.27	+0.2
1,909,734	-		EFB2_01795	0.27	-0.3
1,909,734	-		EFB2_01795	0.27	+0.3
1,909,737	+		EFB2_01795	0.27	-2.4
1,909,737	+		EFB2_01795	0.27	+1.0
1,909,737	+		EFB2_01795	0.27	+1.8
1,909,737	+		EFB2_01795	0.27	-1.7
1,909,738	-		EFB2_01795	0.28	+0.0
1,909,738	-		EFB2_01795	0.28	-0.3
1,909,738	-		EFB2_01795	0.28	+0.2
1,909,749	+		EFB2_01795	0.29	-1.2
1,909,749	+		EFB2_01795	0.29	+0.4
1,909,750	-		EFB2_01795	0.29	-0.5
1,909,750	-		EFB2_01795	0.29	-2.9
1,909,768	+		EFB2_01795	0.31	-1.7
1,909,768	+		EFB2_01795	0.31	+0.3
1,909,768	+		EFB2_01795	0.31	+0.0
1,909,768	+		EFB2_01795	0.31	+0.4
1,909,768	+		EFB2_01795	0.31	+3.3
1,909,768	+		EFB2_01795	0.31	+2.1
1,909,768	+		EFB2_01795	0.31	+2.7
1,909,768	+		EFB2_01795	0.31	+0.4
1,909,768	+		EFB2_01795	0.31	-2.7
1,909,768	+		EFB2_01795	0.31	+3.7
1,909,768	+		EFB2_01795	0.31	-1.7
1,909,768	+		EFB2_01795	0.31	-0.7
1,909,768	+		EFB2_01795	0.31	+0.2
1,909,768	+		EFB2_01795	0.31	-1.9
1,909,769	-		EFB2_01795	0.31	-1.9
1,909,769	-		EFB2_01795	0.31	-1.8
1,909,769	-		EFB2_01795	0.31	+0.2
1,909,769	-		EFB2_01795	0.31	-0.3
1,909,769	-		EFB2_01795	0.31	+0.5
1,909,769	-		EFB2_01795	0.31	-1.1
1,909,769	-		EFB2_01795	0.31	+0.9
1,909,769	-		EFB2_01795	0.31	-0.7
1,909,769	-		EFB2_01795	0.31	+0.2
1,909,769	-		EFB2_01795	0.31	+0.1
1,909,769	-		EFB2_01795	0.31	+1.4
1,909,833	+		EFB2_01795	0.39	+0.0
1,909,864	+		EFB2_01795	0.42	-1.1
1,909,865	-		EFB2_01795	0.43	-0.5
1,909,865	-		EFB2_01795	0.43	+0.3
1,909,876	+		EFB2_01795	0.44	-0.0
1,909,876	+		EFB2_01795	0.44	+0.0
1,909,876	+		EFB2_01795	0.44	+0.6
1,909,876	+		EFB2_01795	0.44	-2.9
1,909,877	-		EFB2_01795	0.44	+1.2
1,909,877	-		EFB2_01795	0.44	-0.5
1,909,877	-		EFB2_01795	0.44	-0.2
1,909,877	-		EFB2_01795	0.44	+0.7
1,909,898	-		EFB2_01795	0.47	+5.2
1,909,940	-		EFB2_01795	0.52	+0.1
1,909,957	+		EFB2_01795	0.54	-1.8
1,909,957	+		EFB2_01795	0.54	+0.4
1,909,958	-		EFB2_01795	0.54	-0.5
1,909,968	+		EFB2_01795	0.55	-0.1
1,909,970	-		EFB2_01795	0.55	-3.3
1,910,050	+		EFB2_01795	0.65	-0.2
1,910,051	-		EFB2_01795	0.65	-1.2
1,910,081	-		EFB2_01795	0.68	+0.8
1,910,124	+		EFB2_01795	0.73	-2.0
1,910,124	+		EFB2_01795	0.73	-0.6
1,910,124	+		EFB2_01795	0.73	+0.0
1,910,176	+		EFB2_01795	0.80	-1.1
1,910,177	-		EFB2_01795	0.80	-1.6
1,910,188	+		EFB2_01795	0.81	-2.2
1,910,188	+		EFB2_01795	0.81	-2.4
1,910,194	-		EFB2_01795	0.82	-0.8
1,910,249	-		EFB2_01795	0.88	+0.7
1,910,263	-				-2.0
1,910,307	+				+2.2
1,910,332	-				-1.5
1,910,344	+				-0.5
1,910,383	+				-0.8
1,910,384	-				-0.2
1,910,490	+		EFB2_01796	0.29	-0.4
1,910,491	-		EFB2_01796	0.29	+0.1
1,910,491	-		EFB2_01796	0.29	+1.2
1,910,498	+		EFB2_01796	0.30	-1.0
1,910,543	+		EFB2_01796	0.40	-0.6
1,910,543	+		EFB2_01796	0.40	-1.4
1,910,543	+		EFB2_01796	0.40	+1.9
1,910,544	-		EFB2_01796	0.40	-0.3
1,910,544	-		EFB2_01796	0.40	+0.3
1,910,545	+		EFB2_01796	0.40	+1.5
1,910,545	+		EFB2_01796	0.40	+1.6
1,910,545	+		EFB2_01796	0.40	-3.9
1,910,545	+		EFB2_01796	0.40	+0.9
1,910,545	+		EFB2_01796	0.40	-1.3
1,910,545	+		EFB2_01796	0.40	-1.9
1,910,545	+		EFB2_01796	0.40	-0.2
1,910,545	+		EFB2_01796	0.40	-1.1
1,910,545	+		EFB2_01796	0.40	-2.4
1,910,546	-		EFB2_01796	0.40	-0.5
1,910,546	-		EFB2_01796	0.40	-1.3
1,910,546	-		EFB2_01796	0.40	+1.3
1,910,546	-		EFB2_01796	0.40	-0.1
1,910,558	+		EFB2_01796	0.43	+0.4
1,910,558	+		EFB2_01796	0.43	-1.6
1,910,558	+		EFB2_01796	0.43	-2.8
1,910,558	+		EFB2_01796	0.43	+2.0
1,910,559	-		EFB2_01796	0.43	-1.7
1,910,559	-		EFB2_01796	0.43	-1.5
1,910,559	-		EFB2_01796	0.43	-2.9
1,910,559	-		EFB2_01796	0.43	+0.4
1,910,559	-		EFB2_01796	0.43	+1.2
1,910,559	-		EFB2_01796	0.43	+0.0
1,910,559	-		EFB2_01796	0.43	+0.4
1,910,561	+		EFB2_01796	0.43	+0.6
1,910,562	-		EFB2_01796	0.44	-2.3
1,910,574	+		EFB2_01796	0.46	-0.4
1,910,592	-		EFB2_01796	0.50	+2.6
1,910,592	-		EFB2_01796	0.50	+0.0
1,910,714	+		EFB2_01796	0.75	+1.1
1,910,714	+		EFB2_01796	0.75	+1.4
1,910,714	+		EFB2_01796	0.75	+1.3
1,910,715	-		EFB2_01796	0.75	-1.8
1,910,726	+		EFB2_01796	0.77	+1.6
1,910,738	+		EFB2_01796	0.80	+0.8
1,910,832	-				-2.6
1,910,839	+				+1.7
1,910,840	-				-1.4
1,910,852	-				+3.3
1,910,892	+				+1.5
1,910,893	-				+0.0
1,910,988	-		EFB2_01797	0.13	-0.3
1,911,007	+		EFB2_01797	0.14	-2.4
1,911,007	+		EFB2_01797	0.14	-0.1
1,911,007	+		EFB2_01797	0.14	+0.4
1,911,007	+		EFB2_01797	0.14	-0.5
1,911,007	+		EFB2_01797	0.14	+1.3
1,911,007	+		EFB2_01797	0.14	-2.3
1,911,007	+		EFB2_01797	0.14	-1.7
1,911,008	-		EFB2_01797	0.14	-2.3
1,911,008	-		EFB2_01797	0.14	-0.8
1,911,008	-		EFB2_01797	0.14	+0.8
1,911,008	-		EFB2_01797	0.14	+1.1
1,911,056	-		EFB2_01797	0.18	+2.3
1,911,087	+		EFB2_01797	0.21	-0.7
1,911,088	-		EFB2_01797	0.21	-0.0
1,911,150	-		EFB2_01797	0.26	+0.0
1,911,150	-		EFB2_01797	0.26	+0.3
1,911,150	-		EFB2_01797	0.26	+0.6
1,911,163	+		EFB2_01797	0.27	+1.2
1,911,163	+		EFB2_01797	0.27	-2.5
1,911,164	-		EFB2_01797	0.27	-0.5
1,911,164	-		EFB2_01797	0.27	-0.0
1,911,164	-		EFB2_01797	0.27	-0.6
1,911,203	-		EFB2_01797	0.30	-0.4
1,911,319	-		EFB2_01797	0.40	-1.1
1,911,322	+		EFB2_01797	0.40	-0.0
1,911,322	+		EFB2_01797	0.40	-2.6
1,911,322	+		EFB2_01797	0.40	+0.3
1,911,322	+		EFB2_01797	0.40	-0.1
1,911,322	+		EFB2_01797	0.40	-0.8
1,911,323	-		EFB2_01797	0.40	+0.0
1,911,381	+		EFB2_01797	0.45	+0.0
1,911,381	+		EFB2_01797	0.45	+0.4
1,911,381	+		EFB2_01797	0.45	+0.5
1,911,381	+		EFB2_01797	0.45	-0.1
1,911,382	-		EFB2_01797	0.45	+0.9
1,911,382	-		EFB2_01797	0.45	-2.0
1,911,415	+		EFB2_01797	0.48	+0.3
1,911,415	+		EFB2_01797	0.48	-0.3
1,911,415	+		EFB2_01797	0.48	-1.3
1,911,415	+		EFB2_01797	0.48	-1.0
1,911,451	+		EFB2_01797	0.51	-0.4
1,911,452	-		EFB2_01797	0.51	-0.5
1,911,452	-		EFB2_01797	0.51	+0.2
1,911,458	+		EFB2_01797	0.51	+1.2
1,911,458	+		EFB2_01797	0.51	-0.2
1,911,458	+		EFB2_01797	0.51	+0.5
1,911,459	-		EFB2_01797	0.51	-2.2
1,911,604	+		EFB2_01797	0.63	+0.3
1,911,604	+		EFB2_01797	0.63	+0.3
1,911,604	+		EFB2_01797	0.63	-2.6
1,911,658	+		EFB2_01797	0.68	+2.7
1,911,658	+		EFB2_01797	0.68	-0.5
1,911,658	+		EFB2_01797	0.68	+0.8
1,911,658	+		EFB2_01797	0.68	-1.7
1,911,658	+		EFB2_01797	0.68	-0.1
1,911,658	+		EFB2_01797	0.68	+3.0
1,911,658	+		EFB2_01797	0.68	+0.3
1,911,659	-		EFB2_01797	0.68	+2.3
1,911,659	-		EFB2_01797	0.68	-1.5
1,911,659	-		EFB2_01797	0.68	+0.8
1,911,659	-		EFB2_01797	0.68	+1.6
1,911,659	-		EFB2_01797	0.68	-1.7
1,911,659	-		EFB2_01797	0.68	-1.7
1,911,659	-		EFB2_01797	0.68	-0.8
1,911,659	-		EFB2_01797	0.68	+2.8
1,911,659	-		EFB2_01797	0.68	-1.1
1,911,659	-		EFB2_01797	0.68	-0.2
1,911,667	+		EFB2_01797	0.68	-1.7
1,911,668	-		EFB2_01797	0.68	-1.4
1,911,700	+		EFB2_01797	0.71	+0.4
1,911,766	-		EFB2_01797	0.77	-0.7
1,911,766	-		EFB2_01797	0.77	-2.6
1,911,785	-		EFB2_01797	0.78	+0.5
1,911,788	+		EFB2_01797	0.78	-0.1
1,911,789	-		EFB2_01797	0.78	-1.7
1,911,789	-		EFB2_01797	0.78	+1.0
1,911,789	-		EFB2_01797	0.78	-1.8
1,911,789	-		EFB2_01797	0.78	-1.5