Strain Fitness in Escherichia fergusonii Becca around EFB2_01708

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
1,801,468	-		EFB2_01707	0.37	-0.6
1,801,468	-		EFB2_01707	0.37	-1.0
1,801,468	-		EFB2_01707	0.37	-2.0
1,801,507	+		EFB2_01707	0.40	+1.3
1,801,507	+		EFB2_01707	0.40	+0.4
1,801,507	+		EFB2_01707	0.40	+2.5
1,801,507	+		EFB2_01707	0.40	-2.8
1,801,507	+		EFB2_01707	0.40	+0.8
1,801,508	-		EFB2_01707	0.40	-0.2
1,801,508	-		EFB2_01707	0.40	+0.7
1,801,508	-		EFB2_01707	0.40	+0.2
1,801,509	+		EFB2_01707	0.40	+0.3
1,801,509	+		EFB2_01707	0.40	-4.2
1,801,518	+		EFB2_01707	0.41	+0.7
1,801,541	+		EFB2_01707	0.42	+0.1
1,801,541	+		EFB2_01707	0.42	-1.0
1,801,541	+		EFB2_01707	0.42	-0.9
1,801,542	-		EFB2_01707	0.42	+2.3
1,801,542	-		EFB2_01707	0.42	+2.3
1,801,558	+		EFB2_01707	0.43	+0.4
1,801,648	-		EFB2_01707	0.49	+0.5
1,801,648	-		EFB2_01707	0.49	+1.9
1,801,758	+		EFB2_01707	0.57	+0.5
1,801,758	+		EFB2_01707	0.57	+0.1
1,801,758	+		EFB2_01707	0.57	+2.6
1,801,759	-		EFB2_01707	0.57	+2.8
1,801,759	-		EFB2_01707	0.57	+1.6
1,801,778	+		EFB2_01707	0.58	-1.8
1,801,778	+		EFB2_01707	0.58	-2.5
1,801,778	+		EFB2_01707	0.58	+0.0
1,801,779	-		EFB2_01707	0.58	+0.3
1,801,804	-		EFB2_01707	0.60	+1.5
1,801,810	-		EFB2_01707	0.60	+2.3
1,801,823	+		EFB2_01707	0.61	-1.9
1,801,823	+		EFB2_01707	0.61	+1.1
1,801,823	+		EFB2_01707	0.61	-0.8
1,801,857	+		EFB2_01707	0.63	+0.5
1,801,857	+		EFB2_01707	0.63	-1.7
1,801,858	-		EFB2_01707	0.63	+0.5
1,801,888	-		EFB2_01707	0.65	-0.5
1,801,888	-		EFB2_01707	0.65	-1.2
1,801,888	-		EFB2_01707	0.65	-3.3
1,801,888	-		EFB2_01707	0.65	+3.0
1,801,904	+		EFB2_01707	0.66	+0.0
1,801,905	-		EFB2_01707	0.66	-0.3
1,801,926	-		EFB2_01707	0.68	+2.3
1,801,954	+		EFB2_01707	0.69	-2.6
1,801,955	-		EFB2_01707	0.69	-0.8
1,801,955	-		EFB2_01707	0.69	+0.3
1,801,961	-		EFB2_01707	0.70	-1.4
1,801,977	+		EFB2_01707	0.71	+0.5
1,801,978	-		EFB2_01707	0.71	-1.5
1,802,006	-		EFB2_01707	0.73	-1.0
1,802,006	-		EFB2_01707	0.73	-0.4
1,802,008	-		EFB2_01707	0.73	-1.2
1,802,177	+		EFB2_01707	0.84	-1.7
1,802,177	+		EFB2_01707	0.84	+2.6
1,802,178	-		EFB2_01707	0.84	+2.0
1,802,277	+				+1.3
1,802,278	-				-1.4
1,802,280	+				-0.4
1,802,281	-				+1.3
1,802,281	-				-0.2
1,802,281	-				+0.0
1,802,416	+				+1.4
1,802,444	+				+0.4
1,802,444	+				-1.0
1,802,444	+				-0.1
1,802,463	+				+0.3
1,802,463	+				-0.3
1,802,463	+				+0.0
1,802,464	-				+0.6
1,802,467	+				+0.2
1,802,468	-				-2.9
1,802,488	+				-1.3
1,802,518	-				-0.7
1,802,562	+		EFB2_01708	0.13	-3.4
1,802,563	-		EFB2_01708	0.13	+1.9
1,802,563	-		EFB2_01708	0.13	+0.7
1,802,563	-		EFB2_01708	0.13	+0.6
1,802,563	-		EFB2_01708	0.13	+0.1
1,802,565	+		EFB2_01708	0.13	+0.0
1,802,589	+		EFB2_01708	0.15	+0.7
1,802,590	-		EFB2_01708	0.15	-2.2
1,802,590	-		EFB2_01708	0.15	-2.8
1,802,592	+		EFB2_01708	0.16	-0.3
1,802,593	-		EFB2_01708	0.16	-0.7
1,802,593	-		EFB2_01708	0.16	+1.3
1,802,593	-		EFB2_01708	0.16	-0.5
1,802,593	-		EFB2_01708	0.16	+2.2
1,802,618	+		EFB2_01708	0.18	-1.9
1,802,618	+		EFB2_01708	0.18	+0.1
1,802,618	+		EFB2_01708	0.18	-1.5
1,802,675	+		EFB2_01708	0.24	-0.8
1,802,676	-		EFB2_01708	0.24	+1.1
1,802,676	-		EFB2_01708	0.24	+0.1
1,802,676	-		EFB2_01708	0.24	+0.2
1,802,678	+		EFB2_01708	0.24	+1.4
1,802,679	-		EFB2_01708	0.24	+0.4
1,802,691	-		EFB2_01708	0.25	-0.8
1,802,818	+		EFB2_01708	0.38	+1.5
1,802,819	-		EFB2_01708	0.38	-0.1
1,802,841	+		EFB2_01708	0.40	-1.7
1,802,842	-		EFB2_01708	0.40	-1.3
1,802,869	+		EFB2_01708	0.43	-0.8
1,802,869	+		EFB2_01708	0.43	-1.4
1,802,877	+		EFB2_01708	0.44	+0.8
1,802,877	+		EFB2_01708	0.44	-0.3
1,802,877	+		EFB2_01708	0.44	-1.8
1,802,877	+		EFB2_01708	0.44	-2.6
1,802,878	-		EFB2_01708	0.44	+1.5
1,802,887	+		EFB2_01708	0.45	+0.8
1,802,887	+		EFB2_01708	0.45	-0.9
1,802,887	+		EFB2_01708	0.45	-0.8
1,802,890	+		EFB2_01708	0.45	-0.8
1,802,890	+		EFB2_01708	0.45	-2.4
1,802,890	+		EFB2_01708	0.45	+1.7
1,802,890	+		EFB2_01708	0.45	-1.0
1,802,891	-		EFB2_01708	0.45	-0.8
1,802,891	-		EFB2_01708	0.45	+0.0
1,802,891	-		EFB2_01708	0.45	-0.1
1,802,891	-		EFB2_01708	0.45	+1.3
1,802,941	-		EFB2_01708	0.50	+0.3
1,802,941	-		EFB2_01708	0.50	-2.5
1,802,986	+		EFB2_01708	0.55	-3.3
1,802,986	+		EFB2_01708	0.55	-2.1
1,802,986	+		EFB2_01708	0.55	-1.9
1,802,986	+		EFB2_01708	0.55	-0.3
1,802,986	+		EFB2_01708	0.55	-0.3
1,802,986	+		EFB2_01708	0.55	-0.4
1,802,986	+		EFB2_01708	0.55	-2.6
1,802,986	+		EFB2_01708	0.55	-2.3
1,802,986	+		EFB2_01708	0.55	+0.7
1,802,986	+		EFB2_01708	0.55	-0.6
1,802,986	+		EFB2_01708	0.55	-1.3
1,802,986	+		EFB2_01708	0.55	+0.3
1,802,986	+		EFB2_01708	0.55	-1.4
1,802,986	+		EFB2_01708	0.55	-1.6
1,802,986	+		EFB2_01708	0.55	-0.3
1,802,986	+		EFB2_01708	0.55	+1.8
1,802,987	-		EFB2_01708	0.55	-0.8
1,802,987	-		EFB2_01708	0.55	-0.5
1,802,987	-		EFB2_01708	0.55	+0.9
1,802,987	-		EFB2_01708	0.55	+1.1
1,802,987	-		EFB2_01708	0.55	-1.8
1,802,987	-		EFB2_01708	0.55	+0.4
1,802,987	-		EFB2_01708	0.55	+1.0
1,802,987	-		EFB2_01708	0.55	+0.5
1,802,987	-		EFB2_01708	0.55	+0.8
1,802,987	-		EFB2_01708	0.55	-0.7
1,802,987	-		EFB2_01708	0.55	+2.2
1,802,987	-		EFB2_01708	0.55	-1.1
1,802,987	-		EFB2_01708	0.55	+1.2
1,802,987	-		EFB2_01708	0.55	-1.2
1,802,987	-		EFB2_01708	0.55	-0.8
1,802,987	-		EFB2_01708	0.55	-1.7
1,802,987	-		EFB2_01708	0.55	-2.1
1,802,987	-		EFB2_01708	0.55	+1.4
1,802,987	-		EFB2_01708	0.55	+0.2
1,802,987	-		EFB2_01708	0.55	+1.1
1,802,998	+		EFB2_01708	0.56	+0.7
1,802,998	+		EFB2_01708	0.56	-0.8
1,802,998	+		EFB2_01708	0.56	+0.8
1,802,998	+		EFB2_01708	0.56	-2.3
1,802,998	+		EFB2_01708	0.56	-0.5
1,802,998	+		EFB2_01708	0.56	+0.0
1,802,998	+		EFB2_01708	0.56	-2.3
1,802,998	+		EFB2_01708	0.56	+1.2
1,802,998	+		EFB2_01708	0.56	-1.5
1,802,999	-		EFB2_01708	0.56	+0.1
1,802,999	-		EFB2_01708	0.56	-1.4
1,802,999	-		EFB2_01708	0.56	-2.8
1,802,999	-		EFB2_01708	0.56	+0.1
1,802,999	-		EFB2_01708	0.56	-0.6
1,802,999	-		EFB2_01708	0.56	-2.4
1,802,999	-		EFB2_01708	0.56	+0.2
1,802,999	-		EFB2_01708	0.56	+1.2
1,803,032	+		EFB2_01708	0.59	-1.5
1,803,033	-		EFB2_01708	0.59	-0.4
1,803,098	+		EFB2_01708	0.66	-2.0
1,803,098	+		EFB2_01708	0.66	+0.2
1,803,098	+		EFB2_01708	0.66	+0.8
1,803,098	+		EFB2_01708	0.66	-0.7
1,803,098	+		EFB2_01708	0.66	-0.3
1,803,099	-		EFB2_01708	0.66	+0.3
1,803,099	-		EFB2_01708	0.66	-0.1
1,803,099	-		EFB2_01708	0.66	-0.3
1,803,136	+		EFB2_01708	0.69	+1.3
1,803,136	+		EFB2_01708	0.69	-2.3
1,803,136	+		EFB2_01708	0.69	+0.3
1,803,137	-		EFB2_01708	0.70	+0.8
1,803,137	-		EFB2_01708	0.70	-2.5
1,803,137	-		EFB2_01708	0.70	-0.9
1,803,137	-		EFB2_01708	0.70	-2.1
1,803,157	+		EFB2_01708	0.72	+0.3
1,803,157	+		EFB2_01708	0.72	+2.3
1,803,157	+		EFB2_01708	0.72	-0.5
1,803,157	+		EFB2_01708	0.72	-3.1
1,803,158	-		EFB2_01708	0.72	-2.2
1,803,158	-		EFB2_01708	0.72	-2.2
1,803,158	-		EFB2_01708	0.72	-1.9
1,803,158	-		EFB2_01708	0.72	-1.1
1,803,176	+		EFB2_01708	0.73	-1.7
1,803,176	+		EFB2_01708	0.73	-2.0
1,803,176	+		EFB2_01708	0.73	+0.5
1,803,177	-		EFB2_01708	0.73	+2.3
1,803,177	-		EFB2_01708	0.73	+0.8
1,803,177	-		EFB2_01708	0.73	-1.1
1,803,177	-		EFB2_01708	0.73	+2.3
1,803,177	-		EFB2_01708	0.73	-0.1
1,803,177	-		EFB2_01708	0.73	+1.5
1,803,177	-		EFB2_01708	0.73	-2.0
1,803,190	-		EFB2_01708	0.75	-1.5
1,803,219	+		EFB2_01708	0.78	+1.6
1,803,219	+		EFB2_01708	0.78	-1.2
1,803,219	+		EFB2_01708	0.78	+2.1
1,803,219	+		EFB2_01708	0.78	+0.1
1,803,219	+		EFB2_01708	0.78	+0.1
1,803,219	+		EFB2_01708	0.78	+1.2
1,803,219	+		EFB2_01708	0.78	-2.0
1,803,219	+		EFB2_01708	0.78	+1.0
1,803,219	+		EFB2_01708	0.78	-0.8
1,803,219	+		EFB2_01708	0.78	-2.3
1,803,219	+		EFB2_01708	0.78	-2.4
1,803,219	+		EFB2_01708	0.78	-0.8
1,803,220	-		EFB2_01708	0.78	+2.0
1,803,220	-		EFB2_01708	0.78	-2.5
1,803,220	-		EFB2_01708	0.78	-0.5
1,803,220	-		EFB2_01708	0.78	+1.5
1,803,220	-		EFB2_01708	0.78	-0.6
1,803,220	-		EFB2_01708	0.78	+0.1
1,803,220	-		EFB2_01708	0.78	-2.1
1,803,220	-		EFB2_01708	0.78	+0.3
1,803,220	-		EFB2_01708	0.78	+0.5
1,803,220	-		EFB2_01708	0.78	-0.7
1,803,223	+		EFB2_01708	0.78	+0.4
1,803,223	+		EFB2_01708	0.78	-1.1
1,803,223	+		EFB2_01708	0.78	-2.8
1,803,223	+		EFB2_01708	0.78	+0.0
1,803,223	+		EFB2_01708	0.78	-0.6
1,803,223	+		EFB2_01708	0.78	-0.8
1,803,223	+		EFB2_01708	0.78	-1.3
1,803,223	+		EFB2_01708	0.78	-0.6
1,803,223	+		EFB2_01708	0.78	-2.2
1,803,223	+		EFB2_01708	0.78	-1.0
1,803,223	+		EFB2_01708	0.78	-0.5
1,803,223	+		EFB2_01708	0.78	+0.4
1,803,223	+		EFB2_01708	0.78	-0.1
1,803,224	-		EFB2_01708	0.78	-1.8
1,803,224	-		EFB2_01708	0.78	-0.1
1,803,224	-		EFB2_01708	0.78	+0.4
1,803,224	-		EFB2_01708	0.78	+0.5
1,803,224	-		EFB2_01708	0.78	-0.9
1,803,224	-		EFB2_01708	0.78	-1.3
1,803,224	-		EFB2_01708	0.78	-1.0
1,803,224	-		EFB2_01708	0.78	-1.4
1,803,224	-		EFB2_01708	0.78	-1.8
1,803,224	-		EFB2_01708	0.78	+0.5
1,803,224	-		EFB2_01708	0.78	+2.1
1,803,290	+		EFB2_01708	0.85	+0.9
1,803,291	-		EFB2_01708	0.85	+0.5
1,803,291	-		EFB2_01708	0.85	+0.5
1,803,311	+		EFB2_01708	0.87	-0.7
1,803,330	+		EFB2_01708	0.89	-1.8
1,803,330	+		EFB2_01708	0.89	-0.6
1,803,330	+		EFB2_01708	0.89	-1.1
1,803,331	-		EFB2_01708	0.89	-0.8
1,803,331	-		EFB2_01708	0.89	-2.8
1,803,334	+		EFB2_01708	0.89	+0.5
1,803,334	+		EFB2_01708	0.89	+1.1
1,803,334	+		EFB2_01708	0.89	-1.9
1,803,335	-		EFB2_01708	0.89	-0.5
1,803,335	-		EFB2_01708	0.89	-0.7
1,803,335	-		EFB2_01708	0.89	-0.8
1,803,335	-		EFB2_01708	0.89	+2.3
1,803,335	-		EFB2_01708	0.89	+0.7
1,803,335	-		EFB2_01708	0.89	+0.7
1,803,335	-		EFB2_01708	0.89	+0.8
1,803,335	-		EFB2_01708	0.89	+2.7
1,803,335	-		EFB2_01708	0.89	-2.1
1,803,335	-		EFB2_01708	0.89	+0.4
1,803,335	-		EFB2_01708	0.89	-0.3
1,803,346	+				+1.3
1,803,346	+				+0.6
1,803,346	+				+0.4
1,803,346	+				+0.5
1,803,346	+				-0.9
1,803,346	+				-1.3
1,803,346	+				-1.7
1,803,346	+				+1.0
1,803,346	+				+4.3
1,803,346	+				+2.3
1,803,346	+				-3.8
1,803,346	+				+0.4
1,803,346	+				-0.4
1,803,346	+				-2.2
1,803,346	+				-0.5
1,803,346	+				+0.0
1,803,346	+				-1.0
1,803,346	+				-1.0
1,803,346	+				-0.3
1,803,346	+				-0.6
1,803,346	+				-0.5
1,803,347	-				+1.8
1,803,347	-				+1.1
1,803,347	-				-0.9
1,803,347	-				-1.8
1,803,347	-				+0.2
1,803,347	-				-0.3
1,803,347	-				+0.0
1,803,347	-				+0.0
1,803,347	-				-0.1
1,803,347	-				-0.3
1,803,347	-				-2.2
1,803,347	-				-0.4
1,803,347	-				+0.5
1,803,347	-				+0.4
1,803,347	-				+1.9
1,803,347	-				+0.1
1,803,347	-				+0.1
1,803,347	-				-2.3
1,803,356	+				-1.6
1,803,373	+				-0.7
1,803,373	+				+1.0
1,803,373	+				-0.5
1,803,373	+				+0.5
1,803,373	+				+0.1
1,803,373	+				-0.4
1,803,373	+				-1.6
1,803,373	+				-0.8
1,803,373	+				-0.7
1,803,374	-				-0.3
1,803,374	-				+1.8
1,803,374	-				+1.1
1,803,374	-				-2.7
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