Strain Fitness in Escherichia fergusonii Becca around EFB2_01525

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
1,597,447	-				-2.3
1,597,582	+		EFB2_01523	0.34	+1.2
1,597,583	-		EFB2_01523	0.34	-0.7
1,597,583	-		EFB2_01523	0.34	-1.9
1,597,585	+		EFB2_01523	0.34	+1.3
1,597,585	+		EFB2_01523	0.34	-2.6
1,597,585	+		EFB2_01523	0.34	-1.8
1,597,585	+		EFB2_01523	0.34	-2.8
1,597,585	+		EFB2_01523	0.34	-0.2
1,597,585	+		EFB2_01523	0.34	-0.0
1,597,586	-		EFB2_01523	0.35	-1.3
1,597,607	+		EFB2_01523	0.39	+0.8
1,597,607	+		EFB2_01523	0.39	-0.5
1,597,607	+		EFB2_01523	0.39	+1.4
1,597,607	+		EFB2_01523	0.39	-0.4
1,597,607	+		EFB2_01523	0.39	+0.6
1,597,607	+		EFB2_01523	0.39	-1.4
1,597,608	-		EFB2_01523	0.39	-0.3
1,597,608	-		EFB2_01523	0.39	-1.5
1,597,608	-		EFB2_01523	0.39	+1.3
1,597,608	-		EFB2_01523	0.39	-1.8
1,597,625	+		EFB2_01523	0.42	+0.5
1,597,625	+		EFB2_01523	0.42	-1.0
1,597,626	-		EFB2_01523	0.42	-0.9
1,597,626	-		EFB2_01523	0.42	+0.6
1,597,626	-		EFB2_01523	0.42	+1.3
1,597,626	-		EFB2_01523	0.42	-0.5
1,597,745	-		EFB2_01523	0.66	+0.4
1,597,784	-		EFB2_01523	0.74	+2.7
1,597,784	-		EFB2_01523	0.74	+1.3
1,597,789	+		EFB2_01523	0.75	-0.6
1,597,789	+		EFB2_01523	0.75	+1.2
1,597,789	+		EFB2_01523	0.75	+2.7
1,597,789	+		EFB2_01523	0.75	-0.5
1,597,789	+		EFB2_01523	0.75	+0.0
1,597,789	+		EFB2_01523	0.75	+2.7
1,597,789	+		EFB2_01523	0.75	-0.8
1,597,789	+		EFB2_01523	0.75	+0.2
1,597,789	+		EFB2_01523	0.75	+1.2
1,597,789	+		EFB2_01523	0.75	-2.1
1,597,789	+		EFB2_01523	0.75	-3.5
1,597,790	-		EFB2_01523	0.75	+2.2
1,597,790	-		EFB2_01523	0.75	+0.5
1,597,790	-		EFB2_01523	0.75	-1.9
1,597,790	-		EFB2_01523	0.75	+3.1
1,597,790	-		EFB2_01523	0.75	+2.3
1,597,790	-		EFB2_01523	0.75	-1.3
1,597,790	-		EFB2_01523	0.75	-2.4
1,597,790	-		EFB2_01523	0.75	+0.7
1,597,790	-		EFB2_01523	0.75	+2.3
1,597,790	-		EFB2_01523	0.75	-2.1
1,597,790	-		EFB2_01523	0.75	-1.7
1,597,813	+		EFB2_01523	0.80	+2.9
1,597,813	+		EFB2_01523	0.80	-0.1
1,597,813	+		EFB2_01523	0.80	+0.0
1,597,813	+		EFB2_01523	0.80	+0.6
1,597,813	+		EFB2_01523	0.80	+2.6
1,597,814	-		EFB2_01523	0.80	-0.6
1,597,814	-		EFB2_01523	0.80	+1.0
1,597,814	-		EFB2_01523	0.80	-0.8
1,597,879	+				-0.1
1,597,879	+				-1.3
1,597,907	+				+1.1
1,597,907	+				+0.2
1,597,907	+				-1.5
1,597,907	+				+0.6
1,597,908	-				-0.9
1,597,908	-				-1.4
1,597,908	-				+0.3
1,597,934	+				-1.9
1,597,934	+				+1.5
1,597,934	+				-2.0
1,597,934	+				+0.5
1,597,934	+				-0.5
1,597,934	+				+1.9
1,597,934	+				-0.7
1,597,934	+				-0.3
1,597,934	+				+0.8
1,597,934	+				+1.3
1,597,935	-				+1.6
1,597,935	-				-0.9
1,597,935	-				+0.9
1,597,935	-				-1.2
1,597,935	-				+0.7
1,597,935	-				+0.8
1,597,935	-				-0.7
1,597,935	-				+0.9
1,597,935	-				+1.0
1,597,935	-				-1.8
1,597,935	-				+1.2
1,597,935	-				-0.5
1,597,935	-				+0.7
1,597,935	-				-2.0
1,597,935	-				-2.0
1,597,935	-				-1.5
1,597,935	-				-1.9
1,597,935	-				-2.3
1,597,935	-				-2.5
1,597,935	-				-0.7
1,597,935	-				-0.8
1,597,939	+				-1.6
1,597,971	+		EFB2_01524	0.12	-1.1
1,597,980	+		EFB2_01524	0.14	+0.0
1,597,981	-		EFB2_01524	0.14	+1.6
1,598,016	+		EFB2_01524	0.22	-0.2
1,598,016	+		EFB2_01524	0.22	+0.5
1,598,016	+		EFB2_01524	0.22	+0.9
1,598,016	+		EFB2_01524	0.22	+0.4
1,598,017	-		EFB2_01524	0.22	+0.1
1,598,017	-		EFB2_01524	0.22	+0.9
1,598,017	-		EFB2_01524	0.22	+0.9
1,598,017	-		EFB2_01524	0.22	+0.4
1,598,017	-		EFB2_01524	0.22	+0.0
1,598,017	-		EFB2_01524	0.22	-0.1
1,598,019	+		EFB2_01524	0.22	+1.5
1,598,019	+		EFB2_01524	0.22	+1.2
1,598,019	+		EFB2_01524	0.22	+1.2
1,598,019	+		EFB2_01524	0.22	-0.7
1,598,019	+		EFB2_01524	0.22	+0.1
1,598,020	-		EFB2_01524	0.23	-0.9
1,598,020	-		EFB2_01524	0.23	+0.0
1,598,020	-		EFB2_01524	0.23	+2.8
1,598,020	-		EFB2_01524	0.23	-3.2
1,598,020	-		EFB2_01524	0.23	+0.0
1,598,031	+		EFB2_01524	0.25	-0.7
1,598,031	+		EFB2_01524	0.25	+2.3
1,598,031	+		EFB2_01524	0.25	+1.1
1,598,031	+		EFB2_01524	0.25	-1.8
1,598,031	+		EFB2_01524	0.25	+2.5
1,598,031	+		EFB2_01524	0.25	-2.1
1,598,031	+		EFB2_01524	0.25	+0.7
1,598,032	-		EFB2_01524	0.25	+0.5
1,598,032	-		EFB2_01524	0.25	+2.7
1,598,032	-		EFB2_01524	0.25	-1.9
1,598,077	-		EFB2_01524	0.34	-0.1
1,598,086	-		EFB2_01524	0.36	-1.4
1,598,086	-		EFB2_01524	0.36	-3.4
1,598,086	-		EFB2_01524	0.36	+2.5
1,598,107	+		EFB2_01524	0.41	-1.1
1,598,107	+		EFB2_01524	0.41	-1.6
1,598,107	+		EFB2_01524	0.41	+0.7
1,598,107	+		EFB2_01524	0.41	+2.2
1,598,107	+		EFB2_01524	0.41	-0.9
1,598,107	+		EFB2_01524	0.41	-0.3
1,598,107	+		EFB2_01524	0.41	-0.3
1,598,107	+		EFB2_01524	0.41	+0.9
1,598,107	+		EFB2_01524	0.41	-0.5
1,598,107	+		EFB2_01524	0.41	-0.1
1,598,107	+		EFB2_01524	0.41	+0.5
1,598,108	-		EFB2_01524	0.41	+1.7
1,598,108	-		EFB2_01524	0.41	-2.1
1,598,108	-		EFB2_01524	0.41	+0.3
1,598,108	-		EFB2_01524	0.41	-0.8
1,598,108	-		EFB2_01524	0.41	-0.7
1,598,108	-		EFB2_01524	0.41	-0.5
1,598,108	-		EFB2_01524	0.41	+0.7
1,598,108	-		EFB2_01524	0.41	-1.6
1,598,108	-		EFB2_01524	0.41	-1.1
1,598,108	-		EFB2_01524	0.41	+0.8
1,598,108	-		EFB2_01524	0.41	-0.9
1,598,185	+		EFB2_01524	0.57	-2.3
1,598,186	-		EFB2_01524	0.57	+1.1
1,598,186	-		EFB2_01524	0.57	+0.3
1,598,186	-		EFB2_01524	0.57	-0.7
1,598,234	+		EFB2_01524	0.67	-0.1
1,598,234	+		EFB2_01524	0.67	+0.6
1,598,234	+		EFB2_01524	0.67	-1.1
1,598,234	+		EFB2_01524	0.67	+0.7
1,598,235	-		EFB2_01524	0.67	-0.5
1,598,235	-		EFB2_01524	0.67	+0.2
1,598,235	-		EFB2_01524	0.67	-1.7
1,598,362	+				+1.3
1,598,363	-				+0.4
1,598,363	-				+0.2
1,598,372	+				-0.3
1,598,372	+				+3.3
1,598,372	+				-0.1
1,598,372	+				+0.6
1,598,373	-				+1.4
1,598,373	-				-0.8
1,598,373	-				-1.1
1,598,383	+				-1.8
1,598,383	+				-0.3
1,598,383	+				+0.1
1,598,395	+				-1.3
1,598,395	+				+1.1
1,598,396	-				-2.2
1,598,396	-				+1.3
1,598,396	-				+0.7
1,598,405	-				+0.1
1,598,422	+				+0.7
1,598,423	-				+2.0
1,598,423	-				+0.4
1,598,478	+		EFB2_01525	0.17	-0.3
1,598,488	+		EFB2_01525	0.19	-1.0
1,598,488	+		EFB2_01525	0.19	+1.0
1,598,489	-		EFB2_01525	0.19	-1.4
1,598,496	-		EFB2_01525	0.20	+0.1
1,598,640	+		EFB2_01525	0.48	-0.1
1,598,640	+		EFB2_01525	0.48	+0.3
1,598,641	-		EFB2_01525	0.48	+0.3
1,598,777	+		EFB2_01525	0.74	+0.3
1,598,777	+		EFB2_01525	0.74	+0.8
1,598,777	+		EFB2_01525	0.74	-0.8
1,598,813	+		EFB2_01525	0.80	-1.1
1,598,813	+		EFB2_01525	0.80	-0.7
1,598,814	-		EFB2_01525	0.81	-2.1
1,598,814	-		EFB2_01525	0.81	+1.1
1,598,814	-		EFB2_01525	0.81	+0.1
1,598,829	-		EFB2_01525	0.84	-2.7
1,598,913	+				+1.0
1,598,913	+				+1.0
1,598,913	+				-1.1
1,598,913	+				-1.2
1,598,913	+				+1.0
1,598,913	+				+1.7
1,598,913	+				+1.7
1,598,913	+				+0.5
1,598,913	+				+0.7
1,598,913	+				-0.2
1,598,914	-				-1.3
1,598,914	-				-1.7
1,598,914	-				-1.0
1,598,914	-				-0.8
1,598,914	-				+1.1
1,598,914	-				+0.0
1,598,914	-				-0.4
1,598,914	-				-1.3
1,598,914	-				-0.1
1,598,914	-				-0.6
1,598,914	-				-1.7
1,598,914	-				-0.7
1,598,914	-				+2.0
1,598,967	+				-0.3
1,598,968	-				-2.3
1,598,968	-				+0.7
1,598,968	-				-0.2
1,598,968	-				-1.0
1,598,968	-				+1.1
1,599,031	-		EFB2_01526	0.14	-1.7
1,599,046	+		EFB2_01526	0.15	-1.3
1,599,047	-		EFB2_01526	0.15	+0.2
1,599,049	+		EFB2_01526	0.16	+1.7
1,599,049	+		EFB2_01526	0.16	+2.0
1,599,049	+		EFB2_01526	0.16	+1.9
1,599,049	+		EFB2_01526	0.16	+0.2
1,599,049	+		EFB2_01526	0.16	+0.2
1,599,049	+		EFB2_01526	0.16	+1.1
1,599,050	-		EFB2_01526	0.16	+1.8
1,599,050	-		EFB2_01526	0.16	-0.1
1,599,050	-		EFB2_01526	0.16	-0.6
1,599,050	-		EFB2_01526	0.16	+1.5
1,599,050	-		EFB2_01526	0.16	-1.3
1,599,050	-		EFB2_01526	0.16	-2.8
1,599,050	-		EFB2_01526	0.16	-1.6
1,599,082	+		EFB2_01526	0.20	+0.6
1,599,083	-		EFB2_01526	0.20	-1.8
1,599,091	+		EFB2_01526	0.21	+0.5
1,599,091	+		EFB2_01526	0.21	-0.3
1,599,091	+		EFB2_01526	0.21	-1.1
1,599,091	+		EFB2_01526	0.21	-0.5
1,599,091	+		EFB2_01526	0.21	+2.0
1,599,091	+		EFB2_01526	0.21	+0.3
1,599,091	+		EFB2_01526	0.21	-0.5
1,599,092	-		EFB2_01526	0.21	-1.7
1,599,092	-		EFB2_01526	0.21	-1.0
1,599,092	-		EFB2_01526	0.21	+0.3
1,599,092	-		EFB2_01526	0.21	+0.7
1,599,108	+		EFB2_01526	0.23	+0.3
1,599,108	+		EFB2_01526	0.23	-0.9
1,599,108	+		EFB2_01526	0.23	+1.2
1,599,108	+		EFB2_01526	0.23	+1.1
1,599,108	+		EFB2_01526	0.23	-0.5
1,599,108	+		EFB2_01526	0.23	+0.5
1,599,108	+		EFB2_01526	0.23	-2.4
1,599,108	+		EFB2_01526	0.23	+1.3
1,599,109	-		EFB2_01526	0.23	+1.1
1,599,109	-		EFB2_01526	0.23	-2.4
1,599,109	-		EFB2_01526	0.23	-2.7
1,599,109	-		EFB2_01526	0.23	+1.1
1,599,109	-		EFB2_01526	0.23	+0.0
1,599,109	-		EFB2_01526	0.23	+1.6
1,599,109	-		EFB2_01526	0.23	+0.4
1,599,109	-		EFB2_01526	0.23	+0.4
1,599,109	-		EFB2_01526	0.23	-0.3
1,599,128	+		EFB2_01526	0.25	+0.7
1,599,134	+		EFB2_01526	0.26	+1.3
1,599,134	+		EFB2_01526	0.26	+2.2
1,599,135	-		EFB2_01526	0.26	-2.3
1,599,135	-		EFB2_01526	0.26	-2.6
1,599,135	-		EFB2_01526	0.26	-2.9
1,599,187	+		EFB2_01526	0.32	+1.3
1,599,187	+		EFB2_01526	0.32	-0.3
1,599,188	-		EFB2_01526	0.32	-0.3
1,599,188	-		EFB2_01526	0.32	-1.9
1,599,188	-		EFB2_01526	0.32	+1.8
1,599,188	-		EFB2_01526	0.32	-0.8
1,599,188	-		EFB2_01526	0.32	-0.8
1,599,188	-		EFB2_01526	0.32	-1.4
1,599,188	-		EFB2_01526	0.32	-1.1
1,599,188	-		EFB2_01526	0.32	-0.8
1,599,188	-		EFB2_01526	0.32	+1.4
1,599,195	-		EFB2_01526	0.33	-0.3
1,599,226	+		EFB2_01526	0.37	+0.4
1,599,226	+		EFB2_01526	0.37	+1.8
1,599,226	+		EFB2_01526	0.37	+0.1
1,599,226	+		EFB2_01526	0.37	+0.7
1,599,226	+		EFB2_01526	0.37	-1.6
1,599,226	+		EFB2_01526	0.37	-1.2
1,599,226	+		EFB2_01526	0.37	+0.2
1,599,226	+		EFB2_01526	0.37	+1.1
1,599,226	+		EFB2_01526	0.37	+0.3
1,599,226	+		EFB2_01526	0.37	+1.5
1,599,226	+		EFB2_01526	0.37	+0.4
1,599,226	+		EFB2_01526	0.37	-1.2
1,599,226	+		EFB2_01526	0.37	+0.5
1,599,226	+		EFB2_01526	0.37	+0.1
1,599,226	+		EFB2_01526	0.37	+1.5
1,599,227	-		EFB2_01526	0.37	+0.7
1,599,227	-		EFB2_01526	0.37	-1.0
1,599,227	-		EFB2_01526	0.37	+0.9
1,599,227	-		EFB2_01526	0.37	-1.6
1,599,227	-		EFB2_01526	0.37	+1.0
1,599,227	-		EFB2_01526	0.37	+0.8
1,599,227	-		EFB2_01526	0.37	+1.0
1,599,227	-		EFB2_01526	0.37	+1.1
1,599,227	-		EFB2_01526	0.37	-1.6
1,599,227	-		EFB2_01526	0.37	+1.7
1,599,227	-		EFB2_01526	0.37	+1.4
1,599,227	-		EFB2_01526	0.37	-3.2
1,599,227	-		EFB2_01526	0.37	+0.0
1,599,227	-		EFB2_01526	0.37	-1.1
1,599,227	-		EFB2_01526	0.37	+0.2
1,599,227	-		EFB2_01526	0.37	-0.5
1,599,227	-		EFB2_01526	0.37	-0.4
1,599,227	-		EFB2_01526	0.37	-0.5
1,599,227	-		EFB2_01526	0.37	-1.8
1,599,244	-		EFB2_01526	0.39	+1.0
1,599,244	-		EFB2_01526	0.39	+3.6
1,599,267	+		EFB2_01526	0.42	-0.5
1,599,267	+		EFB2_01526	0.42	-2.0
1,599,267	+		EFB2_01526	0.42	-0.8
1,599,267	+		EFB2_01526	0.42	-1.1
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