Strain Fitness in Escherichia fergusonii Becca around EFB2_01403

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
1,467,493	+				-2.0
1,467,494	-				+1.6
1,467,494	-				+0.2
1,467,515	+				-0.1
1,467,515	+				+1.0
1,467,515	+				-2.6
1,467,515	+				-0.5
1,467,515	+				-0.7
1,467,515	+				+1.4
1,467,515	+				-0.6
1,467,516	-				-2.0
1,467,516	-				+0.3
1,467,518	+				-0.2
1,467,518	+				-0.0
1,467,518	+				+0.6
1,467,518	+				-1.2
1,467,518	+				-2.3
1,467,518	+				-0.5
1,467,518	+				-1.0
1,467,518	+				+0.8
1,467,518	+				-1.3
1,467,519	-				-0.8
1,467,519	-				+0.2
1,467,519	-				-2.8
1,467,519	-				-2.1
1,467,519	-				-2.2
1,467,519	-				+0.5
1,467,519	-				-0.1
1,467,519	-				+0.3
1,467,519	-				+1.2
1,467,519	-				-2.3
1,467,519	-				+0.6
1,467,519	-				-0.6
1,467,519	-				+0.7
1,467,563	+				-2.8
1,467,563	+				-0.1
1,467,564	-				-2.0
1,467,564	-				+0.8
1,467,565	+				-0.5
1,467,565	+				-0.8
1,467,565	+				-1.9
1,467,565	+				-0.9
1,467,565	+				-0.5
1,467,565	+				-0.5
1,467,565	+				+0.9
1,467,565	+				-1.3
1,467,565	+				-0.5
1,467,566	-				+2.0
1,467,566	-				-0.6
1,467,566	-				-0.4
1,467,566	-				+1.0
1,467,566	-				-0.3
1,467,566	-				-1.6
1,467,566	-				-2.3
1,467,566	-				-1.9
1,467,566	-				+0.4
1,467,566	-				-0.7
1,467,566	-				-2.7
1,467,576	+				-0.7
1,467,576	+				-2.2
1,467,576	+				+0.6
1,467,576	+				+1.7
1,467,576	+				+1.0
1,467,576	+				+2.0
1,467,576	+				+0.7
1,467,576	+				+1.2
1,467,576	+				+1.4
1,467,576	+				+1.6
1,467,576	+				-1.7
1,467,576	+				+1.4
1,467,576	+				+0.2
1,467,576	+				+2.0
1,467,576	+				-0.2
1,467,576	+				+0.1
1,467,577	-				+0.1
1,467,577	-				+1.5
1,467,577	-				-0.2
1,467,577	-				+0.5
1,467,577	-				-1.3
1,467,577	-				+0.8
1,467,577	-				-0.6
1,467,577	-				-1.0
1,467,577	-				+1.2
1,467,577	-				+1.1
1,467,577	-				-3.2
1,467,577	-				+0.9
1,467,577	-				+0.4
1,467,577	-				+1.1
1,467,581	+				-0.5
1,467,581	+				+0.5
1,467,582	-				-1.7
1,467,582	-				+0.8
1,467,582	-				-1.8
1,467,668	+				+1.8
1,468,370	+				-0.4
1,468,371	-				+2.2
1,468,371	-				+0.4
1,468,372	+				-0.0
1,468,372	+				+0.0
1,468,372	+				-0.9
1,468,372	+				-1.5
1,468,373	-				-0.3
1,468,373	-				+0.7
1,468,373	-				+0.9
1,468,373	-				-0.5
1,468,385	+				-0.2
1,468,385	+				-2.3
1,468,385	+				-0.1
1,468,385	+				+1.4
1,468,386	-				-1.0
1,468,386	-				-1.4
1,468,386	-				-1.0
1,468,386	-				+0.1
1,468,405	+				-0.8
1,468,405	+				-1.2
1,468,405	+				+0.3
1,468,405	+				+1.3
1,468,405	+				+1.4
1,468,405	+				-0.2
1,468,405	+				+0.1
1,468,406	-				-0.6
1,468,406	-				-2.4
1,468,406	-				+1.6
1,468,406	-				-2.1
1,468,406	-				+1.2
1,468,408	+				+0.7
1,468,408	+				-2.5
1,468,408	+				-0.7
1,468,408	+				-2.0
1,468,408	+				-1.2
1,468,409	-				+0.5
1,468,409	-				-0.8
1,468,409	-				+0.0
1,468,463	+				+2.8
1,468,463	+				+0.5
1,468,464	-				+0.0
1,468,464	-				-1.0
1,468,481	+				-0.3
1,468,481	+				+2.5
1,468,482	-				-0.5
1,468,499	-				+0.3
1,468,561	+		EFB2_01403	0.23	-0.8
1,468,562	-		EFB2_01403	0.23	+0.8
1,468,562	-		EFB2_01403	0.23	+0.6
1,468,562	-		EFB2_01403	0.23	-0.2
1,468,562	-		EFB2_01403	0.23	+0.7
1,468,635	+		EFB2_01403	0.43	+1.6
1,468,635	+		EFB2_01403	0.43	-2.2
1,468,635	+		EFB2_01403	0.43	-0.0
1,468,637	+		EFB2_01403	0.44	+1.0
1,468,637	+		EFB2_01403	0.44	-0.8
1,468,637	+		EFB2_01403	0.44	+1.9
1,468,637	+		EFB2_01403	0.44	-1.2
1,468,638	-		EFB2_01403	0.44	+2.4
1,468,674	+		EFB2_01403	0.54	+1.2
1,468,736	+		EFB2_01403	0.71	+1.6
1,468,736	+		EFB2_01403	0.71	+0.3
1,468,737	-		EFB2_01403	0.71	-2.8
1,468,812	+				-0.8
1,468,813	-				+0.6
1,468,813	-				+1.1
1,468,817	+				-1.2
1,468,817	+				+3.3
1,468,817	+				+1.7
1,468,817	+				-1.7
1,468,817	+				+2.2
1,468,861	+				-2.5
1,468,861	+				-0.8
1,468,861	+				-1.6
1,468,861	+				-1.3
1,468,861	+				-0.5
1,468,861	+				-0.1
1,468,861	+				+0.5
1,468,861	+				+1.5
1,468,861	+				-1.8
1,468,861	+				-3.5
1,468,861	+				-0.7
1,468,861	+				-0.6
1,468,861	+				+0.4
1,468,862	-				-1.4
1,468,862	-				-2.9
1,468,862	-				+2.7
1,468,862	-				+0.7
1,468,862	-				-1.2
1,468,871	+				-0.6
1,468,871	+				-0.1
1,468,871	+				+2.4
1,468,871	+				-0.0
1,468,871	+				-0.6
1,468,871	+				-0.2
1,468,871	+				-0.6
1,468,871	+				-1.0
1,468,872	-				-1.1
1,468,872	-				+0.8
1,468,872	-				-2.0
1,468,872	-				-0.7
1,468,872	-				-2.2
1,468,872	-				+1.4
1,468,872	-				-2.9
1,468,872	-				+0.5
1,468,872	-				+0.5
1,468,872	-				+0.6
1,468,872	-				-0.5
1,468,872	-				+0.4
1,468,873	+				-1.8
1,468,873	+				-0.9
1,468,873	+				+2.7
1,468,873	+				-1.6
1,468,873	+				-0.1
1,468,874	-				+1.2
1,468,880	+				-3.0
1,468,881	-				-1.3
1,468,881	-				-0.1
1,468,881	-				-1.7
1,468,881	-				-2.3
1,468,947	+				+1.3
1,468,947	+				+0.8
1,468,948	-				+0.8
1,468,970	+				-0.1
1,468,971	-				+0.2
1,468,971	-				+1.9
1,469,015	-		EFB2_01404	0.11	+0.3
1,469,052	-		EFB2_01404	0.13	-1.2
1,469,052	-		EFB2_01404	0.13	+0.5
1,469,055	+		EFB2_01404	0.13	-2.2
1,469,055	+		EFB2_01404	0.13	-1.2
1,469,055	+		EFB2_01404	0.13	-1.3
1,469,056	-		EFB2_01404	0.13	+0.7
1,469,056	-		EFB2_01404	0.13	-1.0
1,469,079	+		EFB2_01404	0.15	-0.2
1,469,105	+		EFB2_01404	0.17	-0.2
1,469,105	+		EFB2_01404	0.17	-1.9
1,469,111	+		EFB2_01404	0.17	+1.7
1,469,111	+		EFB2_01404	0.17	+1.0
1,469,111	+		EFB2_01404	0.17	-2.3
1,469,111	+		EFB2_01404	0.17	+1.0
1,469,112	-		EFB2_01404	0.17	+0.1
1,469,132	+		EFB2_01404	0.19	-1.9
1,469,133	-		EFB2_01404	0.19	-0.6
1,469,163	+		EFB2_01404	0.21	+2.9
1,469,163	+		EFB2_01404	0.21	+1.0
1,469,163	+		EFB2_01404	0.21	-3.2
1,469,163	+		EFB2_01404	0.21	-0.6
1,469,163	+		EFB2_01404	0.21	-0.2
1,469,163	+		EFB2_01404	0.21	-1.5
1,469,164	-		EFB2_01404	0.21	+0.8
1,469,164	-		EFB2_01404	0.21	-0.5
1,469,164	-		EFB2_01404	0.21	-2.8
1,469,164	-		EFB2_01404	0.21	-2.5
1,469,164	-		EFB2_01404	0.21	+2.0
1,469,167	+		EFB2_01404	0.21	-1.0
1,469,167	+		EFB2_01404	0.21	-1.1
1,469,167	+		EFB2_01404	0.21	+1.0
1,469,167	+		EFB2_01404	0.21	+1.5
1,469,167	+		EFB2_01404	0.21	-1.2
1,469,167	+		EFB2_01404	0.21	-0.7
1,469,168	-		EFB2_01404	0.21	-0.1
1,469,168	-		EFB2_01404	0.21	-1.7
1,469,168	-		EFB2_01404	0.21	+1.9
1,469,168	-		EFB2_01404	0.21	+1.4
1,469,168	-		EFB2_01404	0.21	+0.4
1,469,168	-		EFB2_01404	0.21	+0.4
1,469,290	+		EFB2_01404	0.29	-1.2
1,469,290	+		EFB2_01404	0.29	-0.3
1,469,290	+		EFB2_01404	0.29	+1.9
1,469,290	+		EFB2_01404	0.29	+1.2
1,469,290	+		EFB2_01404	0.29	+1.0
1,469,291	-		EFB2_01404	0.29	-0.8
1,469,291	-		EFB2_01404	0.29	+0.5
1,469,291	-		EFB2_01404	0.29	-2.5
1,469,291	-		EFB2_01404	0.29	+0.4
1,469,291	-		EFB2_01404	0.29	+0.0
1,469,291	-		EFB2_01404	0.29	+0.3
1,469,291	-		EFB2_01404	0.29	-0.7
1,469,291	-		EFB2_01404	0.29	-1.2
1,469,291	-		EFB2_01404	0.29	-0.1
1,469,337	-		EFB2_01404	0.33	-1.6
1,469,350	+		EFB2_01404	0.33	+3.0
1,469,350	+		EFB2_01404	0.33	+2.8
1,469,350	+		EFB2_01404	0.33	-0.0
1,469,351	-		EFB2_01404	0.34	-0.2
1,469,351	-		EFB2_01404	0.34	-0.9
1,469,351	-		EFB2_01404	0.34	-0.3
1,469,354	+		EFB2_01404	0.34	+1.3
1,469,354	+		EFB2_01404	0.34	+1.9
1,469,355	-		EFB2_01404	0.34	-1.3
1,469,355	-		EFB2_01404	0.34	+1.0
1,469,355	-		EFB2_01404	0.34	+0.3
1,469,386	+		EFB2_01404	0.36	+1.0
1,469,386	+		EFB2_01404	0.36	-0.5
1,469,386	+		EFB2_01404	0.36	+1.6
1,469,386	+		EFB2_01404	0.36	+1.2
1,469,387	-		EFB2_01404	0.36	-1.0
1,469,387	-		EFB2_01404	0.36	-0.0
1,469,387	-		EFB2_01404	0.36	-1.2
1,469,387	-		EFB2_01404	0.36	-1.7
1,469,470	+		EFB2_01404	0.42	+1.1
1,469,470	+		EFB2_01404	0.42	-2.3
1,469,470	+		EFB2_01404	0.42	-1.2
1,469,470	+		EFB2_01404	0.42	-0.6
1,469,470	+		EFB2_01404	0.42	-0.0
1,469,470	+		EFB2_01404	0.42	-0.8
1,469,470	+		EFB2_01404	0.42	+0.2
1,469,470	+		EFB2_01404	0.42	+3.0
1,469,471	-		EFB2_01404	0.42	-0.1
1,469,471	-		EFB2_01404	0.42	+1.3
1,469,471	-		EFB2_01404	0.42	+2.2
1,469,500	+		EFB2_01404	0.44	+1.2
1,469,500	+		EFB2_01404	0.44	-2.9
1,469,500	+		EFB2_01404	0.44	-1.6
1,469,501	-		EFB2_01404	0.44	-1.0
1,469,501	-		EFB2_01404	0.44	+0.4
1,469,527	-		EFB2_01404	0.46	+0.4
1,469,620	+		EFB2_01404	0.52	+1.4
1,469,620	+		EFB2_01404	0.52	+2.0
1,469,621	-		EFB2_01404	0.52	+0.9
1,469,621	-		EFB2_01404	0.52	+1.0
1,469,637	+		EFB2_01404	0.53	+1.2
1,469,699	+		EFB2_01404	0.57	-1.2
1,469,700	-		EFB2_01404	0.57	+0.1
1,469,700	-		EFB2_01404	0.57	+0.2
1,469,700	-		EFB2_01404	0.57	-0.2
1,469,700	-		EFB2_01404	0.57	-1.9
1,469,772	-		EFB2_01404	0.62	-0.3
1,469,772	-		EFB2_01404	0.62	-3.3
1,469,818	-		EFB2_01404	0.65	+0.2
1,469,822	+		EFB2_01404	0.66	+2.1
1,469,822	+		EFB2_01404	0.66	-1.3
1,469,822	+		EFB2_01404	0.66	+0.2
1,469,823	-		EFB2_01404	0.66	+1.4
1,469,823	-		EFB2_01404	0.66	-1.3
1,469,823	-		EFB2_01404	0.66	-0.5
1,469,823	-		EFB2_01404	0.66	+0.5
1,469,823	-		EFB2_01404	0.66	+1.1
1,469,823	-		EFB2_01404	0.66	+0.1
1,469,823	-		EFB2_01404	0.66	-0.1
1,469,823	-		EFB2_01404	0.66	+0.3
1,469,829	+		EFB2_01404	0.66	+0.2
1,469,829	+		EFB2_01404	0.66	+0.4
1,469,830	-		EFB2_01404	0.66	-0.1