Strain Fitness in Escherichia fergusonii Becca around EFB2_01368

Experiment: phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage mixed community; hk phage cocktail 1 MOI; stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 2)
1,415,866	+		EFB2_01367	0.33	+0.2
1,415,866	+		EFB2_01367	0.33	+1.5
1,415,866	+		EFB2_01367	0.33	-1.9
1,415,866	+		EFB2_01367	0.33	-0.4
1,415,867	-		EFB2_01367	0.33	+0.6
1,415,905	+		EFB2_01367	0.36	+1.2
1,415,905	+		EFB2_01367	0.36	+1.7
1,415,905	+		EFB2_01367	0.36	-0.5
1,415,905	+		EFB2_01367	0.36	-2.3
1,415,905	+		EFB2_01367	0.36	-0.4
1,415,905	+		EFB2_01367	0.36	+1.2
1,415,905	+		EFB2_01367	0.36	-1.4
1,415,905	+		EFB2_01367	0.36	-1.1
1,415,905	+		EFB2_01367	0.36	-1.5
1,415,905	+		EFB2_01367	0.36	+0.4
1,415,905	+		EFB2_01367	0.36	-1.3
1,415,905	+		EFB2_01367	0.36	-1.2
1,415,905	+		EFB2_01367	0.36	+1.1
1,415,906	-		EFB2_01367	0.37	+1.8
1,415,906	-		EFB2_01367	0.37	+0.6
1,415,906	-		EFB2_01367	0.37	-0.8
1,415,906	-		EFB2_01367	0.37	+1.5
1,415,906	-		EFB2_01367	0.37	-0.1
1,415,906	-		EFB2_01367	0.37	+0.0
1,415,906	-		EFB2_01367	0.37	+0.2
1,415,906	-		EFB2_01367	0.37	+0.4
1,415,906	-		EFB2_01367	0.37	-0.6
1,415,906	-		EFB2_01367	0.37	-2.0
1,415,906	-		EFB2_01367	0.37	-0.9
1,415,906	-		EFB2_01367	0.37	+0.9
1,415,906	-		EFB2_01367	0.37	+2.4
1,415,907	+		EFB2_01367	0.37	-0.3
1,415,907	+		EFB2_01367	0.37	+0.9
1,415,907	+		EFB2_01367	0.37	-1.7
1,415,907	+		EFB2_01367	0.37	-1.7
1,415,907	+		EFB2_01367	0.37	-0.2
1,415,907	+		EFB2_01367	0.37	+1.5
1,415,907	+		EFB2_01367	0.37	-0.6
1,415,907	+		EFB2_01367	0.37	-0.7
1,415,907	+		EFB2_01367	0.37	+0.2
1,415,907	+		EFB2_01367	0.37	-0.1
1,415,907	+		EFB2_01367	0.37	+0.8
1,415,907	+		EFB2_01367	0.37	-0.2
1,415,908	-		EFB2_01367	0.37	-1.7
1,415,908	-		EFB2_01367	0.37	-2.3
1,415,908	-		EFB2_01367	0.37	-3.4
1,415,908	-		EFB2_01367	0.37	-1.3
1,415,908	-		EFB2_01367	0.37	-1.3
1,415,908	-		EFB2_01367	0.37	+1.1
1,415,908	-		EFB2_01367	0.37	-0.5
1,415,908	-		EFB2_01367	0.37	+0.9
1,415,908	-		EFB2_01367	0.37	+0.4
1,415,968	+		EFB2_01367	0.41	+0.9
1,415,968	+		EFB2_01367	0.41	-0.7
1,415,968	+		EFB2_01367	0.41	+0.7
1,415,968	+		EFB2_01367	0.41	+0.3
1,415,968	+		EFB2_01367	0.41	-1.5
1,415,969	-		EFB2_01367	0.41	-0.9
1,415,969	-		EFB2_01367	0.41	-2.3
1,415,969	-		EFB2_01367	0.41	-0.3
1,415,969	-		EFB2_01367	0.41	+1.4
1,415,969	-		EFB2_01367	0.41	+1.0
1,415,969	-		EFB2_01367	0.41	-0.6
1,415,985	+		EFB2_01367	0.43	+3.9
1,416,001	+		EFB2_01367	0.44	+0.7
1,416,001	+		EFB2_01367	0.44	-2.0
1,416,001	+		EFB2_01367	0.44	+1.0
1,416,001	+		EFB2_01367	0.44	-1.0
1,416,002	-		EFB2_01367	0.44	-1.7
1,416,002	-		EFB2_01367	0.44	+2.6
1,416,002	-		EFB2_01367	0.44	-2.7
1,416,002	-		EFB2_01367	0.44	-1.6
1,416,019	-		EFB2_01367	0.45	+0.2
1,416,069	+		EFB2_01367	0.49	+0.6
1,416,070	-		EFB2_01367	0.49	+0.2
1,416,070	-		EFB2_01367	0.49	-0.1
1,416,135	+		EFB2_01367	0.54	+0.8
1,416,136	-		EFB2_01367	0.54	+0.5
1,416,220	-		EFB2_01367	0.61	-1.8
1,416,222	+		EFB2_01367	0.61	+1.5
1,416,222	+		EFB2_01367	0.61	-0.0
1,416,222	+		EFB2_01367	0.61	+1.6
1,416,222	+		EFB2_01367	0.61	+0.9
1,416,222	+		EFB2_01367	0.61	-2.2
1,416,222	+		EFB2_01367	0.61	-0.1
1,416,222	+		EFB2_01367	0.61	+0.9
1,416,222	+		EFB2_01367	0.61	-1.4
1,416,222	+		EFB2_01367	0.61	+0.1
1,416,222	+		EFB2_01367	0.61	+0.1
1,416,222	+		EFB2_01367	0.61	+2.3
1,416,223	-		EFB2_01367	0.61	+0.6
1,416,223	-		EFB2_01367	0.61	+0.7
1,416,223	-		EFB2_01367	0.61	-0.6
1,416,223	-		EFB2_01367	0.61	-1.0
1,416,223	-		EFB2_01367	0.61	-2.0
1,416,223	-		EFB2_01367	0.61	+0.4
1,416,223	-		EFB2_01367	0.61	+1.0
1,416,223	-		EFB2_01367	0.61	+1.2
1,416,223	-		EFB2_01367	0.61	+0.8
1,416,223	-		EFB2_01367	0.61	-2.2
1,416,223	-		EFB2_01367	0.61	-1.3
1,416,223	-		EFB2_01367	0.61	-1.2
1,416,223	-		EFB2_01367	0.61	-1.0
1,416,225	+		EFB2_01367	0.61	+0.6
1,416,225	+		EFB2_01367	0.61	+0.5
1,416,225	+		EFB2_01367	0.61	-2.3
1,416,225	+		EFB2_01367	0.61	+0.6
1,416,225	+		EFB2_01367	0.61	-2.6
1,416,226	-		EFB2_01367	0.61	+1.4
1,416,226	-		EFB2_01367	0.61	-1.2
1,416,226	-		EFB2_01367	0.61	-2.0
1,416,226	-		EFB2_01367	0.61	+0.9
1,416,226	-		EFB2_01367	0.61	-0.4
1,416,226	-		EFB2_01367	0.61	-1.9
1,416,226	-		EFB2_01367	0.61	-1.6
1,416,226	-		EFB2_01367	0.61	+0.5
1,416,229	+		EFB2_01367	0.62	+0.2
1,416,229	+		EFB2_01367	0.62	-0.4
1,416,229	+		EFB2_01367	0.62	+0.5
1,416,241	-		EFB2_01367	0.63	+2.7
1,416,385	+		EFB2_01367	0.74	-0.8
1,416,385	+		EFB2_01367	0.74	-0.4
1,416,385	+		EFB2_01367	0.74	+0.7
1,416,507	+		EFB2_01367	0.83	+0.6
1,416,507	+		EFB2_01367	0.83	-0.8
1,416,507	+		EFB2_01367	0.83	+0.2
1,416,508	-		EFB2_01367	0.83	+0.7
1,416,598	+				-0.3
1,416,598	+				-1.1
1,416,598	+				-0.8
1,416,598	+				+0.3
1,416,598	+				-0.9
1,416,598	+				+0.9
1,416,598	+				-0.1
1,416,598	+				-0.2
1,416,598	+				-1.3
1,416,598	+				+0.7
1,416,598	+				-1.3
1,416,599	-				+1.7
1,416,599	-				+2.1
1,416,599	-				-0.8
1,416,619	-				+1.6
1,416,637	+				+1.5
1,416,638	-				-1.0
1,416,638	-				-1.1
1,416,642	+				+0.3
1,416,676	-				-1.8
1,416,702	+				+0.9
1,416,702	+				-0.1
1,416,702	+				-0.9
1,416,702	+				-2.7
1,416,703	-				-0.0
1,416,703	-				-0.4
1,416,719	-				+0.8
1,416,723	+				+0.8
1,416,723	+				-0.4
1,416,723	+				-0.4
1,416,724	-				+0.8
1,416,724	-				-1.7
1,416,742	+				+0.4
1,416,742	+				-2.8
1,416,782	-				+0.2
1,416,800	-				+2.4
1,416,800	-				-0.2
1,416,830	+				+0.7
1,416,830	+				-0.4
1,416,831	-				-0.6
1,416,831	-				-1.6
1,416,853	+				+0.7
1,416,853	+				-0.5
1,416,853	+				-0.8
1,416,853	+				-0.6
1,416,853	+				-0.6
1,416,854	-				+0.0
1,416,854	-				-0.6
1,416,854	-				+0.8
1,416,854	-				-0.2
1,416,854	-				-2.6
1,416,854	-				+0.8
1,416,854	-				-2.3
1,416,854	-				+0.4
1,416,862	+				+1.0
1,416,862	+				-0.3
1,416,862	+				-0.1
1,416,862	+				+0.9
1,416,862	+				-0.5
1,416,862	+				+0.8
1,416,862	+				-0.0
1,416,862	+				-2.6
1,416,862	+				-2.5
1,416,862	+				+0.8
1,416,862	+				+0.2
1,416,862	+				-1.6
1,416,862	+				-3.8
1,416,862	+				-1.4
1,416,862	+				+1.5
1,416,862	+				-1.9
1,416,862	+				-2.5
1,416,862	+				-1.1
1,416,863	-				+0.4
1,416,863	-				+0.1
1,416,863	-				+2.1
1,416,863	-				-0.8
1,416,863	-				+0.3
1,416,863	-				+1.1
1,416,863	-				-0.1
1,416,863	-				-3.2
1,416,863	-				+0.3
1,416,863	-				-1.0
1,416,863	-				-0.1
1,416,863	-				+2.4
1,416,863	-				+1.4
1,416,863	-				-3.6
1,416,863	-				-1.3
1,416,863	-				-0.1
1,416,863	-				-0.3
1,416,943	+		EFB2_01368	0.10	+1.1
1,416,948	+		EFB2_01368	0.11	+0.6
1,416,949	-		EFB2_01368	0.11	-0.1
1,416,949	-		EFB2_01368	0.11	-0.6
1,416,949	-		EFB2_01368	0.11	+1.9
1,416,977	-		EFB2_01368	0.15	+0.5
1,417,010	-		EFB2_01368	0.19	-0.9
1,417,010	-		EFB2_01368	0.19	-0.7
1,417,023	+		EFB2_01368	0.21	+2.7
1,417,024	-		EFB2_01368	0.21	+0.2
1,417,024	-		EFB2_01368	0.21	-2.3
1,417,077	+		EFB2_01368	0.28	+0.6
1,417,077	+		EFB2_01368	0.28	+0.1
1,417,078	-		EFB2_01368	0.28	+0.8
1,417,122	+		EFB2_01368	0.33	-0.8
1,417,122	+		EFB2_01368	0.33	-1.2
1,417,123	-		EFB2_01368	0.33	+1.6
1,417,266	+		EFB2_01368	0.52	-1.9
1,417,266	+		EFB2_01368	0.52	+0.2
1,417,267	-		EFB2_01368	0.52	+1.5
1,417,290	+		EFB2_01368	0.55	+1.8
1,417,290	+		EFB2_01368	0.55	+0.8
1,417,291	-		EFB2_01368	0.55	-1.6
1,417,294	-		EFB2_01368	0.55	-0.8
1,417,336	+		EFB2_01368	0.61	-0.8
1,417,337	-		EFB2_01368	0.61	-0.3
1,417,337	-		EFB2_01368	0.61	-0.3
1,417,345	-		EFB2_01368	0.62	-1.5
1,417,345	-		EFB2_01368	0.62	+2.5
1,417,348	+		EFB2_01368	0.62	+0.8
1,417,348	+		EFB2_01368	0.62	+0.2
1,417,348	+		EFB2_01368	0.62	-1.0
1,417,348	+		EFB2_01368	0.62	-0.8
1,417,349	-		EFB2_01368	0.63	-1.8
1,417,349	-		EFB2_01368	0.63	+0.9
1,417,357	+		EFB2_01368	0.64	-0.6
1,417,357	+		EFB2_01368	0.64	-0.4
1,417,358	-		EFB2_01368	0.64	-0.2
1,417,358	-		EFB2_01368	0.64	+0.5
1,417,378	+		EFB2_01368	0.66	-0.6
1,417,378	+		EFB2_01368	0.66	-1.6
1,417,379	-		EFB2_01368	0.66	-0.4
1,417,379	-		EFB2_01368	0.66	-0.6
1,417,391	-		EFB2_01368	0.68	-1.8
1,417,391	-		EFB2_01368	0.68	-1.5
1,417,414	+		EFB2_01368	0.71	-0.6
1,417,414	+		EFB2_01368	0.71	+0.4
1,417,414	+		EFB2_01368	0.71	-0.5
1,417,414	+		EFB2_01368	0.71	-2.3
1,417,414	+		EFB2_01368	0.71	-0.3
1,417,415	-		EFB2_01368	0.71	-0.1
1,417,415	-		EFB2_01368	0.71	-1.5
1,417,415	-		EFB2_01368	0.71	-0.3
1,417,415	-		EFB2_01368	0.71	-1.7
1,417,419	+		EFB2_01368	0.72	-0.3
1,417,420	-		EFB2_01368	0.72	+1.2
1,417,420	-		EFB2_01368	0.72	+0.1
1,417,420	-		EFB2_01368	0.72	+3.1
1,417,420	-		EFB2_01368	0.72	+0.0
1,417,420	-		EFB2_01368	0.72	+0.8
1,417,420	-		EFB2_01368	0.72	+1.2
1,417,424	-		EFB2_01368	0.72	+0.9
1,417,424	-		EFB2_01368	0.72	-2.0
1,417,424	-		EFB2_01368	0.72	-0.2
1,417,424	-		EFB2_01368	0.72	-0.8
1,417,424	-		EFB2_01368	0.72	-1.4
1,417,459	+		EFB2_01368	0.77	-1.0
1,417,460	-		EFB2_01368	0.77	-0.5
1,417,480	-		EFB2_01368	0.79	-0.1
1,417,480	-		EFB2_01368	0.79	+0.2
1,417,489	+		EFB2_01368	0.81	-3.2
1,417,489	+		EFB2_01368	0.81	+0.4
1,417,489	+		EFB2_01368	0.81	+0.0
1,417,490	-		EFB2_01368	0.81	-1.8
1,417,490	-		EFB2_01368	0.81	-3.5
1,417,494	+		EFB2_01368	0.81	+0.9
1,417,494	+		EFB2_01368	0.81	-1.2
1,417,494	+		EFB2_01368	0.81	-1.4
1,417,494	+		EFB2_01368	0.81	-1.1
1,417,494	+		EFB2_01368	0.81	-2.1
1,417,494	+		EFB2_01368	0.81	-1.8
1,417,495	-		EFB2_01368	0.81	-1.5
1,417,495	-		EFB2_01368	0.81	-1.9
1,417,495	-		EFB2_01368	0.81	-0.3
1,417,495	-		EFB2_01368	0.81	-0.8
1,417,516	+		EFB2_01368	0.84	-1.0
1,417,516	+		EFB2_01368	0.84	+1.0
1,417,516	+		EFB2_01368	0.84	-1.4
1,417,547	-		EFB2_01368	0.88	-0.1
1,417,549	+		EFB2_01368	0.88	+0.2
1,417,549	+		EFB2_01368	0.88	+0.5
1,417,549	+		EFB2_01368	0.88	-2.9
1,417,550	-		EFB2_01368	0.88	-0.2
1,417,550	-		EFB2_01368	0.88	-0.8
1,417,558	+		EFB2_01368	0.89	-0.4
1,417,558	+		EFB2_01368	0.89	-0.6
1,417,558	+		EFB2_01368	0.89	-1.6
1,417,570	+				-1.2
1,417,570	+				-0.3
1,417,570	+				-1.0
1,417,571	-				-0.6
1,417,571	-				+0.1
1,417,571	-				-1.5
1,417,571	-				-0.6
1,417,571	-				-0.4
1,417,571	-				-0.4
1,417,571	-				-2.5
1,417,583	+				+2.2
1,417,583	+				+0.5
1,417,583	+				-0.6
1,417,583	+				-1.6
1,417,583	+				+3.4
1,417,583	+				-1.3
1,417,583	+				+0.3
1,417,583	+				-0.8
1,417,583	+				+0.5
1,417,583	+				-0.6
1,417,583	+				+1.0
1,417,584	-				-0.6
1,417,584	-				-0.4
1,417,584	-				+0.7
1,417,584	-				-2.3
1,417,584	-				+0.9
1,417,584	-				-0.6
1,417,584	-				-1.5
1,417,584	-				+1.0
1,417,584	-				+0.1
1,417,584	-				+0.4
1,417,587	+				-2.8
1,417,619	-				-0.3
1,417,632	+				+0.3
1,417,638	-				+0.6
1,417,672	+				-1.4
1,417,672	+				-2.7
1,417,672	+				+1.6
1,417,673	-				+1.1
1,417,705	-				-1.1
1,417,733	+				+0.4
1,417,733	+				-3.0
1,417,733	+				-0.0
1,417,733	+				+0.5
1,417,733	+				+0.3
1,417,733	+				-2.2
1,417,733	+				-0.2
1,417,733	+				+0.0
1,417,734	-				+0.5
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